HEADER HYDROLASE 18-AUG-20 7CTD TITLE CRYSTAL STRUCTURE OF APO FORM OF ALPHA-GLUCURONIDASE (TM0752) FROM TITLE 2 THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: TM_0752; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMH2T7 KEYWDS GLYCOSYL HYDROLASE FAMILY 4, NAD(P)-BINDING ROSSMANN-FOLD DOMAIN, LDH KEYWDS 2 C-TERMINAL DOMAIN-LIKE, HYDROLASE ACTIVITY, ALPHA-GLUCURONIDASE, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MANOJ,B.S.MOHAPATRA REVDAT 3 29-NOV-23 7CTD 1 REMARK REVDAT 2 14-SEP-22 7CTD 1 JRNL REVDAT 1 01-SEP-21 7CTD 0 JRNL AUTH S.B.MOHAPATRA,N.MANOJ JRNL TITL STRUCTURAL BASIS OF CATALYSIS AND SUBSTRATE RECOGNITION BY JRNL TITL 2 THE NAD(H)-DEPENDENT ALPHA-D-GLUCURONIDASE FROM THE JRNL TITL 3 GLYCOSIDE HYDROLASE FAMILY 4. JRNL REF BIOCHEM.J. V. 478 943 2021 JRNL REFN ESSN 1470-8728 JRNL PMID 33565573 JRNL DOI 10.1042/BCJ20200824 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16-3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4660 - 4.6267 1.00 2630 143 0.1503 0.1781 REMARK 3 2 4.6267 - 3.6746 1.00 2595 141 0.1297 0.1891 REMARK 3 3 3.6746 - 3.2107 1.00 2557 157 0.1530 0.2206 REMARK 3 4 3.2107 - 2.9174 0.99 2550 143 0.1915 0.2330 REMARK 3 5 2.9174 - 2.7085 0.99 2547 125 0.2020 0.2361 REMARK 3 6 2.7085 - 2.5489 0.99 2564 138 0.2046 0.2631 REMARK 3 7 2.5489 - 2.4213 1.00 2569 141 0.2153 0.2667 REMARK 3 8 2.4213 - 2.3159 1.00 2583 124 0.2469 0.2683 REMARK 3 9 2.3159 - 2.2268 1.00 2578 127 0.2517 0.3157 REMARK 3 10 2.2268 - 2.1500 1.00 2527 148 0.2832 0.2923 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2378 4.6444 88.0601 REMARK 3 T TENSOR REMARK 3 T11: 0.5456 T22: 0.4271 REMARK 3 T33: 0.2153 T12: 0.0684 REMARK 3 T13: -0.0121 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 2.4834 L22: 2.2989 REMARK 3 L33: 2.6276 L12: 0.1262 REMARK 3 L13: 0.5614 L23: 0.1995 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: 0.6252 S13: 0.0555 REMARK 3 S21: -0.8161 S22: -0.0707 S23: 0.2369 REMARK 3 S31: -0.3711 S32: 0.0473 S33: 0.0450 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5194 -9.1385 107.2823 REMARK 3 T TENSOR REMARK 3 T11: 0.4316 T22: 0.2788 REMARK 3 T33: 0.3409 T12: 0.0508 REMARK 3 T13: 0.1050 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 0.6754 L22: 1.8815 REMARK 3 L33: 1.5684 L12: 0.2446 REMARK 3 L13: 0.3985 L23: -0.8734 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.2446 S13: -0.2405 REMARK 3 S21: -0.6933 S22: -0.0754 S23: -0.1791 REMARK 3 S31: 0.2702 S32: 0.2227 S33: 0.0746 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4469 5.4904 108.3685 REMARK 3 T TENSOR REMARK 3 T11: 0.3641 T22: 0.2032 REMARK 3 T33: 0.2674 T12: -0.0084 REMARK 3 T13: 0.0040 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 2.7416 L22: 0.8356 REMARK 3 L33: 2.1462 L12: -1.4477 REMARK 3 L13: -0.8542 L23: 0.2236 REMARK 3 S TENSOR REMARK 3 S11: 0.1800 S12: 0.1986 S13: -0.0338 REMARK 3 S21: -0.3374 S22: -0.0863 S23: 0.1008 REMARK 3 S31: -0.0956 S32: -0.0688 S33: -0.0703 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0536 -5.9469 118.3946 REMARK 3 T TENSOR REMARK 3 T11: 0.1921 T22: 0.2486 REMARK 3 T33: 0.3006 T12: -0.0365 REMARK 3 T13: -0.0031 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.4833 L22: 2.6200 REMARK 3 L33: 1.3605 L12: -0.2542 REMARK 3 L13: 0.4507 L23: 0.0757 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: 0.0084 S13: -0.2641 REMARK 3 S21: -0.2446 S22: 0.0612 S23: 0.5529 REMARK 3 S31: 0.1362 S32: -0.3225 S33: -0.0205 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2265 -14.2770 91.0012 REMARK 3 T TENSOR REMARK 3 T11: 0.7271 T22: 0.4442 REMARK 3 T33: 0.4453 T12: -0.0201 REMARK 3 T13: -0.0874 T23: -0.1491 REMARK 3 L TENSOR REMARK 3 L11: 0.1064 L22: 1.0549 REMARK 3 L33: 8.0160 L12: 0.0259 REMARK 3 L13: -0.4359 L23: -2.6698 REMARK 3 S TENSOR REMARK 3 S11: -0.2197 S12: 0.1886 S13: -0.0530 REMARK 3 S21: -0.8124 S22: -0.0117 S23: 0.2502 REMARK 3 S31: 0.9380 S32: -0.6454 S33: 0.1866 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2861 0.4510 112.1126 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.1877 REMARK 3 T33: 0.2562 T12: -0.0136 REMARK 3 T13: 0.0514 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.6852 L22: 1.0515 REMARK 3 L33: 2.2637 L12: -0.0391 REMARK 3 L13: 0.0975 L23: -0.3149 REMARK 3 S TENSOR REMARK 3 S11: 0.0617 S12: 0.1129 S13: -0.0543 REMARK 3 S21: -0.2254 S22: -0.0348 S23: 0.0886 REMARK 3 S31: -0.1067 S32: -0.0806 S33: -0.0332 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CTD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27091 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 29.466 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.16900 REMARK 200 R SYM (I) : 0.16900 REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.89900 REMARK 200 R SYM FOR SHELL (I) : 0.89900 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KCX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14 % PEG 3350, 0.2 M TRILITHIUM REMARK 280 CITRATE, 0.1 M IMIDAZOLE WITH PH 5.8, 2-PROPANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.34500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.47500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.34500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.47500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 11.06431 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 257.87884 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLU A 469 REMARK 465 LYS A 470 REMARK 465 LEU A 471 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 ARG A 42 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 43 CZ NH1 NH2 REMARK 470 ASP A 93 CG OD1 OD2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 LYS A 234 CE NZ REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 ARG A 299 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 304 OE1 REMARK 470 ARG A 307 NE CZ NH1 NH2 REMARK 470 LYS A 315 CD CE NZ REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 THR A 329 OG1 CG2 REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 LYS A 338 CE NZ REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 CYS A 388 SG REMARK 470 CYS A 389 SG REMARK 470 LYS A 395 CE NZ REMARK 470 ARG A 465 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 468 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 616 O HOH A 643 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 68 OG SER A 68 2657 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 10 84.58 -69.81 REMARK 500 ASN A 121 67.79 -157.64 REMARK 500 LEU A 130 -55.79 74.74 REMARK 500 ALA A 150 70.65 -162.09 REMARK 500 HIS A 182 46.58 -106.75 REMARK 500 HIS A 277 17.84 -142.06 REMARK 500 ASP A 387 -156.79 -148.42 REMARK 500 TYR A 408 -68.22 -121.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 687 DISTANCE = 6.00 ANGSTROMS DBREF 7CTD A 1 471 UNP Q9WZL1 Q9WZL1_THEMA 1 471 SEQADV 7CTD MET A -11 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTD GLY A -10 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTD SER A -9 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTD ASP A -8 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTD LYS A -7 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTD ILE A -6 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTD HIS A -5 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTD HIS A -4 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTD HIS A -3 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTD HIS A -2 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTD HIS A -1 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTD HIS A 0 UNP Q9WZL1 EXPRESSION TAG SEQRES 1 A 483 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 483 LYS ILE SER ILE ILE GLY ALA GLY SER VAL ARG PHE ALA SEQRES 3 A 483 LEU GLN LEU VAL GLY ASP ILE ALA GLN THR GLU GLU LEU SEQRES 4 A 483 SER ARG GLU ASP THR HIS ILE TYR MET MET ASP VAL HIS SEQRES 5 A 483 GLU ARG ARG LEU ASN ALA SER TYR ILE LEU ALA ARG LYS SEQRES 6 A 483 TYR VAL GLU GLU LEU ASN SER PRO VAL LYS ILE VAL LYS SEQRES 7 A 483 THR SER SER LEU ASP GLU ALA ILE ASP GLY ALA ASP PHE SEQRES 8 A 483 ILE ILE ASN THR ALA TYR PRO TYR ASP PRO ARG TYR HIS SEQRES 9 A 483 ASP SER GLY SER GLN ARG TRP ASP GLU VAL THR LYS VAL SEQRES 10 A 483 GLY GLU LYS HIS GLY TYR TYR ARG GLY ILE ASP SER GLN SEQRES 11 A 483 GLU LEU ASN MET VAL SER THR TYR THR TYR VAL LEU SER SEQRES 12 A 483 SER TYR PRO ASP MET LYS LEU ALA LEU GLU ILE ALA GLU SEQRES 13 A 483 LYS MET LYS LYS MET ALA PRO LYS ALA TYR LEU MET GLN SEQRES 14 A 483 THR ALA ASN PRO VAL PHE GLU ILE THR GLN ALA VAL ARG SEQRES 15 A 483 ARG TRP THR GLY ALA ASN ILE VAL GLY PHE CYS HIS GLY SEQRES 16 A 483 VAL ALA GLY VAL TYR GLU VAL PHE GLU LYS LEU ASP LEU SEQRES 17 A 483 ASP PRO GLU GLU VAL ASP TRP GLN VAL ALA GLY VAL ASN SEQRES 18 A 483 HIS GLY ILE TRP LEU ASN ARG PHE ARG TYR ARG GLY GLU SEQRES 19 A 483 ASP ALA TYR PRO LEU LEU ASP GLU TRP ILE GLU LYS LYS SEQRES 20 A 483 LEU PRO GLU TRP GLU PRO LYS ASN PRO TRP ASP THR GLN SEQRES 21 A 483 MET SER PRO ALA ALA MET ASP MET TYR LYS PHE TYR GLY SEQRES 22 A 483 MET LEU PRO ILE GLY ASP THR VAL ARG ASN GLY SER TRP SEQRES 23 A 483 LYS TYR HIS TYR ASN LEU GLU THR LYS LYS LYS TRP PHE SEQRES 24 A 483 GLY LYS PHE GLY GLY ILE ASP ASN GLU VAL GLU ARG PRO SEQRES 25 A 483 LYS PHE HIS GLU GLN LEU ARG ARG ALA ARG GLU ARG LEU SEQRES 26 A 483 ILE LYS LEU ALA GLU GLU VAL GLN GLN ASN PRO GLY MET SEQRES 27 A 483 LYS LEU THR GLU GLU HIS PRO GLU ILE PHE PRO LYS GLY SEQRES 28 A 483 LYS LEU SER GLY GLU GLN HIS ILE PRO PHE ILE ASN ALA SEQRES 29 A 483 ILE ALA ASN ASN LYS ARG VAL ARG LEU PHE LEU ASN VAL SEQRES 30 A 483 GLU ASN GLN GLY THR LEU LYS ASP PHE PRO ASP ASP VAL SEQRES 31 A 483 VAL MET GLU LEU PRO VAL TRP VAL ASP CYS CYS GLY ILE SEQRES 32 A 483 HIS ARG GLU LYS VAL GLU PRO ASP LEU THR HIS ARG ILE SEQRES 33 A 483 LYS ILE PHE TYR LEU TRP PRO ARG ILE LEU ARG MET GLU SEQRES 34 A 483 TRP ASN LEU GLU ALA TYR ILE SER ARG ASP ARG LYS VAL SEQRES 35 A 483 LEU GLU GLU ILE LEU ILE ARG ASP PRO ARG THR LYS SER SEQRES 36 A 483 TYR GLU GLN ILE VAL GLN VAL LEU ASP GLU ILE PHE ASN SEQRES 37 A 483 LEU PRO PHE ASN GLU GLU LEU ARG ARG TYR TYR LYS GLU SEQRES 38 A 483 LYS LEU FORMUL 2 HOH *187(H2 O) HELIX 1 AA1 SER A 10 GLN A 23 1 14 HELIX 2 AA2 HIS A 40 ASN A 59 1 20 HELIX 3 AA3 SER A 69 ASP A 75 1 7 HELIX 4 AA4 SER A 94 HIS A 109 1 16 HELIX 5 AA5 SER A 132 ALA A 150 1 19 HELIX 6 AA6 PRO A 161 GLY A 174 1 14 HELIX 7 AA7 HIS A 182 ALA A 185 5 4 HELIX 8 AA8 GLY A 186 LEU A 194 1 9 HELIX 9 AA9 ASP A 197 GLU A 199 5 3 HELIX 10 AB1 ALA A 224 LYS A 235 1 12 HELIX 11 AB2 LEU A 236 TRP A 239 5 4 HELIX 12 AB3 SER A 250 GLY A 261 1 12 HELIX 13 AB4 GLY A 266 ARG A 270 5 5 HELIX 14 AB5 SER A 273 HIS A 277 5 5 HELIX 15 AB6 ASN A 279 GLY A 288 1 10 HELIX 16 AB7 VAL A 297 ASN A 323 1 27 HELIX 17 AB8 LYS A 327 HIS A 332 1 6 HELIX 18 AB9 GLN A 345 ASN A 356 1 12 HELIX 19 AC1 THR A 401 TYR A 408 1 8 HELIX 20 AC2 TYR A 408 ARG A 426 1 19 HELIX 21 AC3 ASP A 427 ARG A 437 1 11 HELIX 22 AC4 SER A 443 LEU A 457 1 15 HELIX 23 AC5 ASN A 460 TYR A 467 1 8 SHEET 1 AA1 9 LYS A 63 THR A 67 0 SHEET 2 AA1 9 THR A 32 MET A 37 1 N MET A 36 O VAL A 65 SHEET 3 AA1 9 MET A 1 ILE A 6 1 N MET A 1 O HIS A 33 SHEET 4 AA1 9 PHE A 79 ASN A 82 1 O ILE A 81 N SER A 4 SHEET 5 AA1 9 TYR A 154 GLN A 157 1 O TYR A 154 N ILE A 80 SHEET 6 AA1 9 ILE A 177 PHE A 180 1 O VAL A 178 N LEU A 155 SHEET 7 AA1 9 VAL A 359 GLU A 366 -1 O ASN A 364 N GLY A 179 SHEET 8 AA1 9 VAL A 379 ASP A 387 -1 O VAL A 384 N LEU A 361 SHEET 9 AA1 9 GLY A 390 ARG A 393 -1 O HIS A 392 N TRP A 385 SHEET 1 AA2 3 VAL A 201 VAL A 208 0 SHEET 2 AA2 3 GLY A 211 TYR A 219 -1 O GLY A 211 N VAL A 208 SHEET 3 AA2 3 GLU A 222 ASP A 223 -1 O GLU A 222 N TYR A 219 SHEET 1 AA3 3 VAL A 201 VAL A 208 0 SHEET 2 AA3 3 GLY A 211 TYR A 219 -1 O GLY A 211 N VAL A 208 SHEET 3 AA3 3 PRO A 264 ILE A 265 -1 O ILE A 265 N ILE A 212 CISPEP 1 ASN A 160 PRO A 161 0 0.16 CISPEP 2 GLU A 397 PRO A 398 0 -5.39 CRYST1 72.690 80.950 88.380 90.00 103.44 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013757 0.000000 0.003288 0.00000 SCALE2 0.000000 0.012353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011633 0.00000