HEADER IMMUNE SYSTEM 21-AUG-20 7CU5 TITLE N-GLYCOSYLATION OF PD-1 AND GLYCOSYLATION DEPENDENT BINDING OF PD-1 TITLE 2 SPECIFIC MONOCLONAL ANTIBODY CAMRELIZUMAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMRELIZUMAB-SCFV; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 1; COMPND 7 CHAIN: E, Q; COMPND 8 SYNONYM: HPD-1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: PDCD1, PD1; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS CAMRELIZUMAB, GLYCOSYLATION, PD-1., IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.F.LIU,S.G.TAN,W.J.JIN,J.W.GUAN,W.L.WANG,H.SUN,J.X.QI,J.H.YAN, AUTHOR 2 Y.CHAI,Z.F.WANG,X.D.CHU,G.F.GAO REVDAT 3 29-NOV-23 7CU5 1 REMARK REVDAT 2 31-MAR-21 7CU5 1 JRNL REVDAT 1 14-OCT-20 7CU5 0 JRNL AUTH K.LIU,S.TAN,W.JIN,J.GUAN,Q.WANG,H.SUN,J.QI,J.YAN,Y.CHAI, JRNL AUTH 2 Z.WANG,C.DENG,G.F.GAO JRNL TITL N-GLYCOSYLATION OF PD-1 PROMOTES BINDING OF CAMRELIZUMAB. JRNL REF EMBO REP. V. 21 51444 2020 JRNL REFN ESSN 1469-3178 JRNL PMID 33063473 JRNL DOI 10.15252/EMBR.202051444 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 26114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 1234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6800 - 5.8300 0.99 2933 142 0.1794 0.2170 REMARK 3 2 5.8300 - 4.6300 0.99 2901 150 0.1615 0.1880 REMARK 3 3 4.6300 - 4.0500 0.98 2892 147 0.1665 0.1989 REMARK 3 4 4.0500 - 3.6800 0.98 2909 101 0.2352 0.2810 REMARK 3 5 3.6800 - 3.4100 0.96 2851 141 0.2504 0.2888 REMARK 3 6 3.4100 - 3.2100 0.98 2880 139 0.2592 0.2682 REMARK 3 7 3.2100 - 3.0500 0.98 2899 139 0.2717 0.3638 REMARK 3 8 3.0500 - 2.9200 0.94 2742 162 0.2877 0.3602 REMARK 3 9 2.9200 - 2.8100 0.64 1873 113 0.2967 0.3327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.364 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.489 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5610 REMARK 3 ANGLE : 0.678 7621 REMARK 3 CHIRALITY : 0.046 881 REMARK 3 PLANARITY : 0.005 956 REMARK 3 DIHEDRAL : 20.787 2082 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27286 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5WT9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CADMIUM CHLORIDE, 0.1M NA REMARK 280 ACETATE, PH4.6, 30 %(V/V) PEG 400 A MONTH LATER., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Q, D, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -41.16548 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 77.59769 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, C, I REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 -65.03200 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 110.95117 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 87.99492 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP E 85 REMARK 465 ARG E 86 REMARK 465 SER E 87 REMARK 465 GLN E 88 REMARK 465 PRO E 89 REMARK 465 GLY E 90 REMARK 465 GLN E 91 REMARK 465 ASP Q 85 REMARK 465 ARG Q 86 REMARK 465 SER Q 87 REMARK 465 GLN Q 88 REMARK 465 PRO Q 89 REMARK 465 GLY Q 90 REMARK 465 GLN Q 91 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 100 -72.66 -118.27 REMARK 500 SER B 128 -72.23 -71.69 REMARK 500 SER B 130 -23.39 68.74 REMARK 500 SER B 131 155.91 174.91 REMARK 500 TRP B 153 33.76 -91.53 REMARK 500 THR B 171 26.82 49.34 REMARK 500 ALA B 172 -10.54 72.11 REMARK 500 THR B 173 -31.98 -132.99 REMARK 500 PHE B 204 99.90 -68.46 REMARK 500 ARG E 104 -35.93 -130.10 REMARK 500 PRO E 130 135.42 -39.87 REMARK 500 LYS E 131 74.76 65.48 REMARK 500 LEU A 100 -158.89 -126.77 REMARK 500 TYR A 101 10.06 -66.03 REMARK 500 SER A 121 -5.57 75.76 REMARK 500 SER A 130 -15.49 70.63 REMARK 500 THR A 171 29.74 49.18 REMARK 500 ALA A 172 -10.10 72.73 REMARK 500 THR A 173 -32.40 -135.30 REMARK 500 ALA A 205 -174.82 -172.22 REMARK 500 ASN Q 74 -2.03 66.50 REMARK 500 PRO Q 101 0.69 -69.07 REMARK 500 PRO Q 130 -36.48 -37.06 REMARK 500 REMARK 500 REMARK: NULL DBREF 7CU5 B 0 229 PDB 7CU5 7CU5 0 229 DBREF 7CU5 E 30 147 UNP Q15116 PDCD1_HUMAN 30 147 DBREF 7CU5 A 0 229 PDB 7CU5 7CU5 0 229 DBREF 7CU5 Q 30 147 UNP Q15116 PDCD1_HUMAN 30 147 SEQRES 1 B 230 MET GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL SEQRES 2 B 230 GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 B 230 GLY PHE THR PHE SER SER TYR MET MET SER TRP VAL ARG SEQRES 4 B 230 GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA THR ILE SEQRES 5 B 230 SER GLY GLY GLY ALA ASN THR TYR TYR PRO ASP SER VAL SEQRES 6 B 230 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 B 230 SER LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP SEQRES 8 B 230 THR ALA VAL TYR TYR CYS ALA ARG GLN LEU TYR TYR PHE SEQRES 9 B 230 ASP TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SER SEQRES 10 B 230 GLY GLY GLY GLY SER ASP ILE GLN MET THR GLN SER PRO SEQRES 11 B 230 SER SER LEU SER ALA SER VAL GLY ASP ARG VAL THR ILE SEQRES 12 B 230 THR CYS LEU ALA SER GLN THR ILE GLY THR TRP LEU THR SEQRES 13 B 230 TRP TYR GLN GLN LYS PRO GLY LYS ALA PRO LYS LEU LEU SEQRES 14 B 230 ILE TYR THR ALA THR SER LEU ALA ASP GLY VAL PRO SER SEQRES 15 B 230 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 16 B 230 THR ILE SER SER LEU GLN PRO GLU ASP PHE ALA THR TYR SEQRES 17 B 230 TYR CYS GLN GLN VAL TYR SER ILE PRO TRP THR PHE GLY SEQRES 18 B 230 GLY GLY THR LYS VAL GLU ILE LYS ARG SEQRES 1 E 118 ARG PRO TRP ASN PRO PRO THR PHE SER PRO ALA LEU LEU SEQRES 2 E 118 VAL VAL THR GLU GLY ASP ASN ALA THR PHE THR CYS SER SEQRES 3 E 118 PHE SER ASN THR SER GLU SER PHE VAL LEU ASN TRP TYR SEQRES 4 E 118 ARG MET SER PRO SER ASN GLN THR ASP LYS LEU ALA ALA SEQRES 5 E 118 PHE PRO GLU ASP ARG SER GLN PRO GLY GLN ASP CYS ARG SEQRES 6 E 118 PHE ARG VAL THR GLN LEU PRO ASN GLY ARG ASP PHE HIS SEQRES 7 E 118 MET SER VAL VAL ARG ALA ARG ARG ASN ASP SER GLY THR SEQRES 8 E 118 TYR LEU CYS GLY ALA ILE SER LEU ALA PRO LYS ALA GLN SEQRES 9 E 118 ILE LYS GLU SER LEU ARG ALA GLU LEU ARG VAL THR GLU SEQRES 10 E 118 ARG SEQRES 1 A 230 MET GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL SEQRES 2 A 230 GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 A 230 GLY PHE THR PHE SER SER TYR MET MET SER TRP VAL ARG SEQRES 4 A 230 GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA THR ILE SEQRES 5 A 230 SER GLY GLY GLY ALA ASN THR TYR TYR PRO ASP SER VAL SEQRES 6 A 230 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 A 230 SER LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP SEQRES 8 A 230 THR ALA VAL TYR TYR CYS ALA ARG GLN LEU TYR TYR PHE SEQRES 9 A 230 ASP TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SER SEQRES 10 A 230 GLY GLY GLY GLY SER ASP ILE GLN MET THR GLN SER PRO SEQRES 11 A 230 SER SER LEU SER ALA SER VAL GLY ASP ARG VAL THR ILE SEQRES 12 A 230 THR CYS LEU ALA SER GLN THR ILE GLY THR TRP LEU THR SEQRES 13 A 230 TRP TYR GLN GLN LYS PRO GLY LYS ALA PRO LYS LEU LEU SEQRES 14 A 230 ILE TYR THR ALA THR SER LEU ALA ASP GLY VAL PRO SER SEQRES 15 A 230 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 16 A 230 THR ILE SER SER LEU GLN PRO GLU ASP PHE ALA THR TYR SEQRES 17 A 230 TYR CYS GLN GLN VAL TYR SER ILE PRO TRP THR PHE GLY SEQRES 18 A 230 GLY GLY THR LYS VAL GLU ILE LYS ARG SEQRES 1 Q 118 ARG PRO TRP ASN PRO PRO THR PHE SER PRO ALA LEU LEU SEQRES 2 Q 118 VAL VAL THR GLU GLY ASP ASN ALA THR PHE THR CYS SER SEQRES 3 Q 118 PHE SER ASN THR SER GLU SER PHE VAL LEU ASN TRP TYR SEQRES 4 Q 118 ARG MET SER PRO SER ASN GLN THR ASP LYS LEU ALA ALA SEQRES 5 Q 118 PHE PRO GLU ASP ARG SER GLN PRO GLY GLN ASP CYS ARG SEQRES 6 Q 118 PHE ARG VAL THR GLN LEU PRO ASN GLY ARG ASP PHE HIS SEQRES 7 Q 118 MET SER VAL VAL ARG ALA ARG ARG ASN ASP SER GLY THR SEQRES 8 Q 118 TYR LEU CYS GLY ALA ILE SER LEU ALA PRO LYS ALA GLN SEQRES 9 Q 118 ILE LYS GLU SER LEU ARG ALA GLU LEU ARG VAL THR GLU SEQRES 10 Q 118 ARG HET NAG D 1 14 HET NAG D 2 14 HET MAN D 3 11 HET MAN D 4 11 HET FUC D 5 10 HET NAG K 1 14 HET NAG K 2 14 HET FUC K 3 10 HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET MAN C 4 11 HET FUC C 5 10 HET NAG I 1 14 HET NAG I 2 14 HET FUC I 3 10 HET NAG E 201 14 HET NAG Q 201 14 HET NAG Q 202 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 NAG 11(C8 H15 N O6) FORMUL 5 MAN 4(C6 H12 O6) FORMUL 5 FUC 4(C6 H12 O5) HELIX 1 AA1 THR B 28 TYR B 32 5 5 HELIX 2 AA2 ARG B 87 THR B 91 5 5 HELIX 3 AA3 GLN B 200 PHE B 204 5 5 HELIX 4 AA4 ARG E 114 SER E 118 5 5 HELIX 5 AA5 THR A 28 TYR A 32 5 5 HELIX 6 AA6 ARG A 87 THR A 91 5 5 HELIX 7 AA7 GLN A 200 PHE A 204 5 5 HELIX 8 AA8 ARG Q 114 SER Q 118 5 5 SHEET 1 AA1 4 GLN B 3 SER B 7 0 SHEET 2 AA1 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AA1 4 SER B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA1 4 PHE B 68 ASP B 73 -1 N SER B 71 O TYR B 80 SHEET 1 AA2 6 LEU B 11 VAL B 12 0 SHEET 2 AA2 6 THR B 110 VAL B 114 1 O THR B 113 N VAL B 12 SHEET 3 AA2 6 ALA B 92 GLN B 99 -1 N ALA B 92 O VAL B 112 SHEET 4 AA2 6 MET B 33 GLN B 39 -1 N VAL B 37 O TYR B 95 SHEET 5 AA2 6 GLU B 46 ILE B 51 -1 O ILE B 51 N MET B 34 SHEET 6 AA2 6 THR B 58 TYR B 59 -1 O TYR B 59 N THR B 50 SHEET 1 AA3 4 LEU B 11 VAL B 12 0 SHEET 2 AA3 4 THR B 110 VAL B 114 1 O THR B 113 N VAL B 12 SHEET 3 AA3 4 ALA B 92 GLN B 99 -1 N ALA B 92 O VAL B 112 SHEET 4 AA3 4 PHE B 103 TRP B 106 -1 O TYR B 105 N ARG B 98 SHEET 1 AA4 4 MET B 125 GLN B 127 0 SHEET 2 AA4 4 VAL B 140 ALA B 146 -1 O LEU B 145 N THR B 126 SHEET 3 AA4 4 ASP B 191 ILE B 196 -1 O LEU B 194 N ILE B 142 SHEET 4 AA4 4 PHE B 183 SER B 188 -1 N SER B 184 O THR B 195 SHEET 1 AA5 6 SER B 131 ALA B 134 0 SHEET 2 AA5 6 THR B 223 ILE B 227 1 O GLU B 226 N LEU B 132 SHEET 3 AA5 6 ALA B 205 GLN B 211 -1 N ALA B 205 O VAL B 225 SHEET 4 AA5 6 LEU B 154 GLN B 159 -1 N GLN B 159 O THR B 206 SHEET 5 AA5 6 LYS B 166 TYR B 170 -1 O LYS B 166 N GLN B 158 SHEET 6 AA5 6 SER B 174 LEU B 175 -1 O SER B 174 N TYR B 170 SHEET 1 AA6 4 THR E 36 SER E 38 0 SHEET 2 AA6 4 ALA E 50 SER E 55 -1 O THR E 53 N SER E 38 SHEET 3 AA6 4 ASP E 105 VAL E 110 -1 O VAL E 110 N ALA E 50 SHEET 4 AA6 4 PHE E 95 GLN E 99 -1 N THR E 98 O HIS E 107 SHEET 1 AA7 5 LEU E 41 THR E 45 0 SHEET 2 AA7 5 ALA E 140 THR E 145 1 O ARG E 143 N LEU E 42 SHEET 3 AA7 5 GLY E 119 SER E 127 -1 N TYR E 121 O ALA E 140 SHEET 4 AA7 5 PHE E 63 MET E 70 -1 N ASN E 66 O GLY E 124 SHEET 5 AA7 5 THR E 76 PHE E 82 -1 O LEU E 79 N TRP E 67 SHEET 1 AA8 4 LEU E 41 THR E 45 0 SHEET 2 AA8 4 ALA E 140 THR E 145 1 O ARG E 143 N LEU E 42 SHEET 3 AA8 4 GLY E 119 SER E 127 -1 N TYR E 121 O ALA E 140 SHEET 4 AA8 4 GLN E 133 GLU E 136 -1 O GLN E 133 N SER E 127 SHEET 1 AA9 4 GLN A 3 SER A 7 0 SHEET 2 AA9 4 SER A 17 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 AA9 4 SER A 78 ASN A 84 -1 O LEU A 79 N CYS A 22 SHEET 4 AA9 4 PHE A 68 ASP A 73 -1 N SER A 71 O TYR A 80 SHEET 1 AB1 6 GLY A 10 VAL A 12 0 SHEET 2 AB1 6 THR A 110 VAL A 114 1 O THR A 113 N VAL A 12 SHEET 3 AB1 6 ALA A 92 GLN A 99 -1 N TYR A 94 O THR A 110 SHEET 4 AB1 6 MET A 33 GLN A 39 -1 N MET A 33 O GLN A 99 SHEET 5 AB1 6 LEU A 45 ILE A 51 -1 O ILE A 51 N MET A 34 SHEET 6 AB1 6 THR A 58 TYR A 59 -1 O TYR A 59 N THR A 50 SHEET 1 AB2 4 GLY A 10 VAL A 12 0 SHEET 2 AB2 4 THR A 110 VAL A 114 1 O THR A 113 N VAL A 12 SHEET 3 AB2 4 ALA A 92 GLN A 99 -1 N TYR A 94 O THR A 110 SHEET 4 AB2 4 PHE A 103 TRP A 106 -1 O ASP A 104 N ARG A 98 SHEET 1 AB3 4 MET A 125 GLN A 127 0 SHEET 2 AB3 4 VAL A 140 ALA A 146 -1 O LEU A 145 N THR A 126 SHEET 3 AB3 4 ASP A 191 ILE A 196 -1 O LEU A 194 N ILE A 142 SHEET 4 AB3 4 PHE A 183 SER A 188 -1 N SER A 184 O THR A 195 SHEET 1 AB4 6 LEU A 132 SER A 135 0 SHEET 2 AB4 6 THR A 223 LYS A 228 1 O GLU A 226 N LEU A 132 SHEET 3 AB4 6 ALA A 205 GLN A 211 -1 N TYR A 207 O THR A 223 SHEET 4 AB4 6 LEU A 154 GLN A 159 -1 N THR A 155 O GLN A 210 SHEET 5 AB4 6 PRO A 165 TYR A 170 -1 O LYS A 166 N GLN A 158 SHEET 6 AB4 6 SER A 174 LEU A 175 -1 O SER A 174 N TYR A 170 SHEET 1 AB5 4 THR Q 36 SER Q 38 0 SHEET 2 AB5 4 ALA Q 50 SER Q 55 -1 O THR Q 53 N SER Q 38 SHEET 3 AB5 4 ASP Q 105 VAL Q 110 -1 O MET Q 108 N PHE Q 52 SHEET 4 AB5 4 PHE Q 95 GLN Q 99 -1 N THR Q 98 O HIS Q 107 SHEET 1 AB6 5 LEU Q 41 THR Q 45 0 SHEET 2 AB6 5 ALA Q 140 THR Q 145 1 O ARG Q 143 N LEU Q 42 SHEET 3 AB6 5 GLY Q 119 SER Q 127 -1 N TYR Q 121 O ALA Q 140 SHEET 4 AB6 5 PHE Q 63 MET Q 70 -1 N ASN Q 66 O GLY Q 124 SHEET 5 AB6 5 THR Q 76 PHE Q 82 -1 O LEU Q 79 N TRP Q 67 SHEET 1 AB7 4 LEU Q 41 THR Q 45 0 SHEET 2 AB7 4 ALA Q 140 THR Q 145 1 O ARG Q 143 N LEU Q 42 SHEET 3 AB7 4 GLY Q 119 SER Q 127 -1 N TYR Q 121 O ALA Q 140 SHEET 4 AB7 4 GLN Q 133 GLU Q 136 -1 O GLN Q 133 N SER Q 127 SSBOND 1 CYS B 22 CYS B 96 1555 1555 2.04 SSBOND 2 CYS B 144 CYS B 209 1555 1555 2.04 SSBOND 3 CYS E 54 CYS E 123 1555 1555 2.04 SSBOND 4 CYS A 22 CYS A 96 1555 1555 2.04 SSBOND 5 CYS A 144 CYS A 209 1555 1555 2.04 SSBOND 6 CYS Q 54 CYS Q 123 1555 1555 2.03 LINK ND2 ASN E 49 C1 NAG I 1 1555 1555 1.44 LINK ND2 ASN E 58 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN E 116 C1 NAG E 201 1555 1555 1.44 LINK ND2 ASN Q 49 C1 NAG K 1 1555 1555 1.59 LINK ND2 ASN Q 58 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN Q 74 C1 NAG Q 201 1555 1555 1.45 LINK ND2 ASN Q 116 C1 NAG Q 202 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 LINK O6 NAG D 1 C1 FUC D 5 1555 1555 1.42 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.37 LINK O6 MAN D 3 C1 MAN D 4 1555 1555 1.37 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.38 LINK O6 NAG K 1 C1 FUC K 3 1555 1555 1.37 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O6 NAG C 1 C1 FUC C 5 1555 1555 1.43 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.37 LINK O3 MAN C 3 C1 MAN C 4 1555 1555 1.38 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.38 LINK O6 NAG I 1 C1 FUC I 3 1555 1555 1.37 CISPEP 1 ILE B 215 PRO B 216 0 -0.98 CISPEP 2 SER E 38 PRO E 39 0 -2.78 CISPEP 3 PHE E 82 PRO E 83 0 0.94 CISPEP 4 ILE A 215 PRO A 216 0 -1.47 CISPEP 5 SER Q 38 PRO Q 39 0 -3.59 CISPEP 6 PHE Q 82 PRO Q 83 0 0.90 CRYST1 43.108 77.622 96.051 69.38 78.44 88.57 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023198 -0.000581 -0.004852 0.00000 SCALE2 0.000000 0.012887 -0.004885 0.00000 SCALE3 0.000000 0.000000 0.011364 0.00000