HEADER METAL BINDING PROTEIN 22-AUG-20 7CUE TITLE CRYSTAL STRUCTURE OF HID2 BOUND TO HUMAN HEMOGLOBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ALPHA-GLOBIN,HEMOGLOBIN ALPHA CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMOGLOBIN SUBUNIT BETA; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: BETA-GLOBIN,HEMOGLOBIN BETA CHAIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AMINO ACID ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 11 CHAIN: E, F, H; COMPND 12 FRAGMENT: HID2 DOMAIN; COMPND 13 SYNONYM: DUF1533 DOMAIN-CONTAINING PROTEIN,HEME-BINDING PROTEIN SHR; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 11 ORGANISM_TAXID: 1314; SOURCE 12 GENE: SHR, INLA_2, G3M98_06270, GTK50_07335, SAMEA3919037_01262; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEMOGLOBIN, STAPHYLOCOCCUS AUREUS, HEMOGLOBIN BINDING PROTEIN, KEYWDS 2 PROTEIN-PROTEIN INTERACTION, SHR, HEME ACQUISITION, METAL BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.M.CAAVEIRO,M.HOSHINO,K.TSUMOTO REVDAT 2 29-NOV-23 7CUE 1 REMARK REVDAT 1 07-JUL-21 7CUE 0 JRNL AUTH J.M.M.CAAVEIRO,M.HOSHINO,A.SENOO,M.NAKAKIDO,S.NAGATOISHI, JRNL AUTH 2 J.R.H.TAME,K.TSUMOTO JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF HUMAN HEMOGLOBIN BY JRNL TITL 2 THE SHR PROTEIN FROM STREPTOCOCCUS PYOGENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 23276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1224 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1421 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.4420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 182 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.22000 REMARK 3 B22 (A**2) : -1.45000 REMARK 3 B33 (A**2) : 1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.418 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.342 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.778 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7243 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6750 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9882 ; 1.516 ; 1.677 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15655 ; 1.190 ; 1.604 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 891 ; 6.516 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 297 ;36.087 ;24.175 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1195 ;17.468 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.632 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 932 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8054 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1439 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 5 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 141 C 1 141 4177 0.120 0.050 REMARK 3 2 B 1 146 D 1 146 4318 0.120 0.050 REMARK 3 3 E 176 283 F 176 283 3091 0.110 0.050 REMARK 3 4 E 176 283 H 176 283 3098 0.100 0.050 REMARK 3 5 F 176 283 H 176 283 3122 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24514 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 44.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 7CUD, 4NI0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 3350 (W/V), 100MM AMMONIUM REMARK 280 SULFATE, 100MM BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 89.25000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.38000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 89.25000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.38000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -153.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 465 MET C 0 REMARK 465 MET D 0 REMARK 465 LYS E 171 REMARK 465 ASN E 172 REMARK 465 THR E 173 REMARK 465 ALA E 174 REMARK 465 ASN E 175 REMARK 465 LYS E 284 REMARK 465 GLN E 285 REMARK 465 HIS E 286 REMARK 465 VAL E 287 REMARK 465 THR E 288 REMARK 465 ALA E 289 REMARK 465 GLU E 290 REMARK 465 ASP E 291 REMARK 465 ARG E 292 REMARK 465 GLN E 293 REMARK 465 SER E 294 REMARK 465 LYS F 171 REMARK 465 ASN F 172 REMARK 465 THR F 173 REMARK 465 ALA F 174 REMARK 465 ASN F 175 REMARK 465 LYS F 284 REMARK 465 GLN F 285 REMARK 465 HIS F 286 REMARK 465 VAL F 287 REMARK 465 THR F 288 REMARK 465 ALA F 289 REMARK 465 GLU F 290 REMARK 465 ASP F 291 REMARK 465 ARG F 292 REMARK 465 GLN F 293 REMARK 465 SER F 294 REMARK 465 LYS H 171 REMARK 465 ASN H 172 REMARK 465 THR H 173 REMARK 465 ALA H 174 REMARK 465 ASN H 175 REMARK 465 LYS H 284 REMARK 465 GLN H 285 REMARK 465 HIS H 286 REMARK 465 VAL H 287 REMARK 465 THR H 288 REMARK 465 ALA H 289 REMARK 465 GLU H 290 REMARK 465 ASP H 291 REMARK 465 ARG H 292 REMARK 465 GLN H 293 REMARK 465 SER H 294 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 144 OD1 ASP C 74 1565 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 154.83 -47.24 REMARK 500 ASN B 80 55.20 -148.27 REMARK 500 SER C 3 158.36 -48.79 REMARK 500 LYS C 90 -62.39 -91.48 REMARK 500 TYR D 35 68.90 -117.62 REMARK 500 ASN D 80 49.14 -153.74 REMARK 500 LYS D 144 44.70 -78.08 REMARK 500 SER E 177 31.06 -94.28 REMARK 500 THR E 180 -30.88 -137.65 REMARK 500 ASP E 186 97.36 -65.95 REMARK 500 ASN E 216 53.40 39.07 REMARK 500 ILE E 224 -75.25 64.93 REMARK 500 SER E 225 7.82 -150.50 REMARK 500 LYS E 229 106.14 -45.20 REMARK 500 ASN E 232 58.34 -93.07 REMARK 500 VAL E 279 -62.49 -121.47 REMARK 500 THR F 180 -31.20 -137.69 REMARK 500 ASP F 186 104.01 -53.90 REMARK 500 LYS F 201 -37.61 -38.51 REMARK 500 ASN F 216 51.85 39.38 REMARK 500 ILE F 224 -74.70 63.83 REMARK 500 LYS F 229 107.48 -45.17 REMARK 500 ASN F 232 57.47 -93.18 REMARK 500 SER F 259 -169.43 -129.18 REMARK 500 VAL F 279 -66.49 -121.26 REMARK 500 THR H 180 -31.84 -135.48 REMARK 500 ASN H 216 52.39 39.45 REMARK 500 ILE H 224 -78.67 66.29 REMARK 500 SER H 225 9.49 -152.42 REMARK 500 LYS H 229 107.92 -48.70 REMARK 500 ASN H 232 57.79 -93.60 REMARK 500 ASP H 264 132.48 -32.30 REMARK 500 ASP H 273 51.27 34.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HEM A 201 NA 97.9 REMARK 620 3 HEM A 201 NB 97.9 88.9 REMARK 620 4 HEM A 201 NC 91.1 170.6 87.2 REMARK 620 5 HEM A 201 ND 92.2 90.0 169.9 92.4 REMARK 620 6 HOH A 304 O 170.9 91.3 82.7 79.8 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 201 NA 88.8 REMARK 620 3 HEM B 201 NB 94.1 88.4 REMARK 620 4 HEM B 201 NC 94.0 174.9 87.1 REMARK 620 5 HEM B 201 ND 89.4 93.1 176.2 91.1 REMARK 620 6 HOH B 301 O 173.0 90.0 92.7 87.7 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 87 NE2 REMARK 620 2 HEM C 201 NA 93.0 REMARK 620 3 HEM C 201 NB 98.0 87.6 REMARK 620 4 HEM C 201 NC 89.3 174.5 87.2 REMARK 620 5 HEM C 201 ND 84.1 92.5 177.9 92.8 REMARK 620 6 HOH C 305 O 169.1 97.8 83.5 80.0 94.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 92 NE2 REMARK 620 2 HEM D 201 NA 85.0 REMARK 620 3 HEM D 201 NB 90.3 86.8 REMARK 620 4 HEM D 201 NC 97.6 173.5 87.3 REMARK 620 5 HEM D 201 ND 94.8 93.4 175.0 92.3 REMARK 620 6 HOH D 301 O 165.9 109.0 92.4 68.7 82.8 REMARK 620 N 1 2 3 4 5 DBREF 7CUE A 0 141 UNP P69905 HBA_HUMAN 1 142 DBREF 7CUE B 0 146 UNP P68871 HBB_HUMAN 1 147 DBREF 7CUE C 0 141 UNP P69905 HBA_HUMAN 1 142 DBREF 7CUE D 0 146 UNP P68871 HBB_HUMAN 1 147 DBREF 7CUE E 171 294 UNP B0LFQ8 B0LFQ8_STRPY 171 294 DBREF 7CUE F 171 294 UNP B0LFQ8 B0LFQ8_STRPY 171 294 DBREF 7CUE H 171 294 UNP B0LFQ8 B0LFQ8_STRPY 171 294 SEQRES 1 A 142 MET VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA SEQRES 2 A 142 ALA TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY SEQRES 3 A 142 ALA GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR SEQRES 4 A 142 THR LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SEQRES 5 A 142 SER ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP SEQRES 6 A 142 ALA LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO SEQRES 7 A 142 ASN ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS SEQRES 8 A 142 LEU ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS SEQRES 9 A 142 CYS LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU SEQRES 10 A 142 PHE THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU SEQRES 11 A 142 ALA SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 147 MET VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR SEQRES 2 B 147 ALA LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY SEQRES 3 B 147 GLU ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR SEQRES 4 B 147 GLN ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO SEQRES 5 B 147 ASP ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY SEQRES 6 B 147 LYS LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS SEQRES 7 B 147 LEU ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU SEQRES 8 B 147 LEU HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE SEQRES 9 B 147 ARG LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS SEQRES 10 B 147 HIS PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA SEQRES 11 B 147 TYR GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA SEQRES 12 B 147 HIS LYS TYR HIS SEQRES 1 C 142 MET VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA SEQRES 2 C 142 ALA TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY SEQRES 3 C 142 ALA GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR SEQRES 4 C 142 THR LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SEQRES 5 C 142 SER ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP SEQRES 6 C 142 ALA LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO SEQRES 7 C 142 ASN ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS SEQRES 8 C 142 LEU ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS SEQRES 9 C 142 CYS LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU SEQRES 10 C 142 PHE THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU SEQRES 11 C 142 ALA SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 D 147 MET VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR SEQRES 2 D 147 ALA LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY SEQRES 3 D 147 GLU ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR SEQRES 4 D 147 GLN ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO SEQRES 5 D 147 ASP ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY SEQRES 6 D 147 LYS LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS SEQRES 7 D 147 LEU ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU SEQRES 8 D 147 LEU HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE SEQRES 9 D 147 ARG LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS SEQRES 10 D 147 HIS PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA SEQRES 11 D 147 TYR GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA SEQRES 12 D 147 HIS LYS TYR HIS SEQRES 1 E 124 LYS ASN THR ALA ASN LEU SER LEU ILE THR LYS LEU SER SEQRES 2 E 124 GLN GLU ASP GLY ALA ILE LEU PHE PRO GLU ILE ASP ARG SEQRES 3 E 124 TYR SER ASP ASN LYS GLN ILE LYS ALA LEU THR GLN GLN SEQRES 4 E 124 ILE THR LYS VAL THR VAL ASN GLY THR VAL TYR LYS ASP SEQRES 5 E 124 LEU ILE SER ASP SER VAL LYS ASP THR ASN GLY TRP VAL SEQRES 6 E 124 SER ASN MET THR GLY LEU HIS LEU GLY THR LYS ALA PHE SEQRES 7 E 124 LYS ASP GLY GLU ASN THR ILE VAL ILE SER SER LYS GLY SEQRES 8 E 124 PHE GLU ASP VAL THR ILE THR VAL THR LYS LYS ASP GLY SEQRES 9 E 124 GLN ILE HIS PHE VAL SER ALA LYS GLN LYS GLN HIS VAL SEQRES 10 E 124 THR ALA GLU ASP ARG GLN SER SEQRES 1 F 124 LYS ASN THR ALA ASN LEU SER LEU ILE THR LYS LEU SER SEQRES 2 F 124 GLN GLU ASP GLY ALA ILE LEU PHE PRO GLU ILE ASP ARG SEQRES 3 F 124 TYR SER ASP ASN LYS GLN ILE LYS ALA LEU THR GLN GLN SEQRES 4 F 124 ILE THR LYS VAL THR VAL ASN GLY THR VAL TYR LYS ASP SEQRES 5 F 124 LEU ILE SER ASP SER VAL LYS ASP THR ASN GLY TRP VAL SEQRES 6 F 124 SER ASN MET THR GLY LEU HIS LEU GLY THR LYS ALA PHE SEQRES 7 F 124 LYS ASP GLY GLU ASN THR ILE VAL ILE SER SER LYS GLY SEQRES 8 F 124 PHE GLU ASP VAL THR ILE THR VAL THR LYS LYS ASP GLY SEQRES 9 F 124 GLN ILE HIS PHE VAL SER ALA LYS GLN LYS GLN HIS VAL SEQRES 10 F 124 THR ALA GLU ASP ARG GLN SER SEQRES 1 H 124 LYS ASN THR ALA ASN LEU SER LEU ILE THR LYS LEU SER SEQRES 2 H 124 GLN GLU ASP GLY ALA ILE LEU PHE PRO GLU ILE ASP ARG SEQRES 3 H 124 TYR SER ASP ASN LYS GLN ILE LYS ALA LEU THR GLN GLN SEQRES 4 H 124 ILE THR LYS VAL THR VAL ASN GLY THR VAL TYR LYS ASP SEQRES 5 H 124 LEU ILE SER ASP SER VAL LYS ASP THR ASN GLY TRP VAL SEQRES 6 H 124 SER ASN MET THR GLY LEU HIS LEU GLY THR LYS ALA PHE SEQRES 7 H 124 LYS ASP GLY GLU ASN THR ILE VAL ILE SER SER LYS GLY SEQRES 8 H 124 PHE GLU ASP VAL THR ILE THR VAL THR LYS LYS ASP GLY SEQRES 9 H 124 GLN ILE HIS PHE VAL SER ALA LYS GLN LYS GLN HIS VAL SEQRES 10 H 124 THR ALA GLU ASP ARG GLN SER HET HEM A 201 43 HET HEM B 201 43 HET SO4 B 202 5 HET HEM C 201 43 HET HEM D 201 43 HET SO4 F 301 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETSYN HEM HEME FORMUL 8 HEM 4(C34 H32 FE N4 O4) FORMUL 10 SO4 2(O4 S 2-) FORMUL 14 HOH *22(H2 O) HELIX 1 AA1 SER A 3 GLY A 18 1 16 HELIX 2 AA2 HIS A 20 PHE A 36 1 17 HELIX 3 AA3 PRO A 37 PHE A 43 5 7 HELIX 4 AA4 SER A 52 VAL A 70 1 19 HELIX 5 AA5 ASP A 75 LEU A 80 1 6 HELIX 6 AA6 LEU A 80 LYS A 90 1 11 HELIX 7 AA7 ASP A 94 LEU A 113 1 20 HELIX 8 AA8 THR A 118 THR A 137 1 20 HELIX 9 AA9 THR B 4 GLY B 16 1 13 HELIX 10 AB1 GLU B 22 TYR B 35 1 14 HELIX 11 AB2 PRO B 36 GLY B 46 5 11 HELIX 12 AB3 THR B 50 GLY B 56 1 7 HELIX 13 AB4 ASN B 57 HIS B 77 1 21 HELIX 14 AB5 ASN B 80 PHE B 85 1 6 HELIX 15 AB6 PHE B 85 LYS B 95 1 11 HELIX 16 AB7 PRO B 100 GLY B 119 1 20 HELIX 17 AB8 LYS B 120 PHE B 122 5 3 HELIX 18 AB9 THR B 123 LYS B 144 1 22 HELIX 19 AC1 SER C 3 GLY C 18 1 16 HELIX 20 AC2 HIS C 20 PHE C 36 1 17 HELIX 21 AC3 PRO C 37 PHE C 43 5 7 HELIX 22 AC4 SER C 52 HIS C 72 1 21 HELIX 23 AC5 ASP C 75 LEU C 80 1 6 HELIX 24 AC6 LEU C 80 LYS C 90 1 11 HELIX 25 AC7 ASP C 94 LEU C 113 1 20 HELIX 26 AC8 THR C 118 THR C 137 1 20 HELIX 27 AC9 THR D 4 GLY D 16 1 13 HELIX 28 AD1 ASN D 19 TYR D 35 1 17 HELIX 29 AD2 PRO D 36 GLY D 46 5 11 HELIX 30 AD3 THR D 50 GLY D 56 1 7 HELIX 31 AD4 ASN D 57 HIS D 77 1 21 HELIX 32 AD5 ASN D 80 PHE D 85 1 6 HELIX 33 AD6 PHE D 85 LYS D 95 1 11 HELIX 34 AD7 PRO D 100 GLY D 119 1 20 HELIX 35 AD8 LYS D 120 PHE D 122 5 3 HELIX 36 AD9 THR D 123 HIS D 143 1 21 HELIX 37 AE1 LYS D 144 HIS D 146 5 3 HELIX 38 AE2 ASN E 200 GLN E 209 1 10 HELIX 39 AE3 ASN F 200 GLN F 209 1 10 HELIX 40 AE4 ASN H 200 GLN H 209 1 10 SHEET 1 AA1 5 SER E 183 GLU E 185 0 SHEET 2 AA1 5 ALA E 188 PHE E 191 -1 O ALA E 188 N GLU E 185 SHEET 3 AA1 5 GLY E 240 GLY E 244 -1 O LEU E 243 N ILE E 189 SHEET 4 AA1 5 GLY E 233 ASN E 237 -1 N VAL E 235 O HIS E 242 SHEET 5 AA1 5 LYS E 221 ASP E 222 1 N LYS E 221 O TRP E 234 SHEET 1 AA2 5 THR E 218 VAL E 219 0 SHEET 2 AA2 5 ILE E 210 VAL E 215 -1 N VAL E 215 O THR E 218 SHEET 3 AA2 5 GLY E 251 SER E 259 -1 O SER E 258 N LYS E 212 SHEET 4 AA2 5 VAL E 265 LYS E 271 -1 O ILE E 267 N ILE E 255 SHEET 5 AA2 5 ILE E 276 LYS E 282 -1 O SER E 280 N THR E 268 SHEET 1 AA3 5 SER F 183 GLU F 185 0 SHEET 2 AA3 5 ALA F 188 PHE F 191 -1 O ALA F 188 N GLU F 185 SHEET 3 AA3 5 GLY F 240 GLY F 244 -1 O LEU F 243 N ILE F 189 SHEET 4 AA3 5 GLY F 233 ASN F 237 -1 N VAL F 235 O HIS F 242 SHEET 5 AA3 5 LYS F 221 ASP F 222 1 N LYS F 221 O TRP F 234 SHEET 1 AA4 5 THR F 218 VAL F 219 0 SHEET 2 AA4 5 LYS F 212 VAL F 215 -1 N VAL F 215 O THR F 218 SHEET 3 AA4 5 GLY F 251 SER F 258 -1 O SER F 258 N LYS F 212 SHEET 4 AA4 5 VAL F 265 LYS F 271 -1 O ILE F 267 N ILE F 255 SHEET 5 AA4 5 ILE F 276 LYS F 282 -1 O SER F 280 N THR F 268 SHEET 1 AA5 5 SER H 183 GLU H 185 0 SHEET 2 AA5 5 ALA H 188 PHE H 191 -1 O ALA H 188 N GLU H 185 SHEET 3 AA5 5 LEU H 241 GLY H 244 -1 O LEU H 243 N ILE H 189 SHEET 4 AA5 5 GLY H 233 SER H 236 -1 N VAL H 235 O HIS H 242 SHEET 5 AA5 5 LYS H 221 ASP H 222 1 N LYS H 221 O TRP H 234 SHEET 1 AA6 5 THR H 218 VAL H 219 0 SHEET 2 AA6 5 ILE H 210 VAL H 215 -1 N VAL H 215 O THR H 218 SHEET 3 AA6 5 GLY H 251 SER H 259 -1 O SER H 258 N LYS H 212 SHEET 4 AA6 5 PHE H 262 LYS H 271 -1 O ILE H 267 N ILE H 255 SHEET 5 AA6 5 ILE H 276 LYS H 282 -1 O SER H 280 N THR H 268 LINK NE2 HIS A 87 FE HEM A 201 1555 1555 2.03 LINK FE HEM A 201 O HOH A 304 1555 1555 2.03 LINK NE2 HIS B 92 FE HEM B 201 1555 1555 2.08 LINK FE HEM B 201 O HOH B 301 1555 1555 2.16 LINK NE2 HIS C 87 FE HEM C 201 1555 1555 2.19 LINK FE HEM C 201 O HOH C 305 1555 1555 2.57 LINK NE2 HIS D 92 FE HEM D 201 1555 1555 2.09 LINK FE HEM D 201 O HOH D 301 1555 1555 2.29 CRYST1 178.500 52.760 129.170 90.00 118.35 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005602 0.000000 0.003023 0.00000 SCALE2 0.000000 0.018954 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008797 0.00000