HEADER STRUCTURAL PROTEIN 25-AUG-20 7CUZ OBSLTE 08-NOV-23 7CUZ 7XMJ TITLE STRUCTURAL INSIGHTS INTO A NOVEL CARBOHYDRATE ESTERASE FAMILY 7 ACETYL TITLE 2 XYLAN ESTERASE FROM LACTOCOCCUS LACTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLXYLAN ESTERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. LACTIS (STRAIN SOURCE 3 KF147); SOURCE 4 ORGANISM_TAXID: 684738; SOURCE 5 GENE: AXE, LLKF_1447; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CARBOHYDRATE ESTERASE, ACETYL XYLAN ESTERASE, CATALYTIC MECHANISM, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.Q.JIANG,J.W.MA,P.HUANG REVDAT 3 29-NOV-23 7CUZ 1 REMARK REVDAT 2 08-NOV-23 7CUZ 1 OBSLTE REVDAT 1 25-AUG-21 7CUZ 0 JRNL AUTH Z.Q.JIANG,J.W.MA,P.HUANG JRNL TITL STRUCTURAL INSIGHTS INTO A NOVEL CARBOHYDRATE ESTERASE JRNL TITL 2 FAMILY 7 ACETYL XYLAN ESTERASE FROM LACTOCOCCUS LACTIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2474 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.377 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 64477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.971 REMARK 3 FREE R VALUE TEST SET COUNT : 3205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4736 - 6.8399 0.99 2710 135 0.2112 0.2220 REMARK 3 2 6.8399 - 5.4353 1.00 2677 151 0.2345 0.3144 REMARK 3 3 5.4353 - 4.7501 1.00 2690 127 0.2169 0.2587 REMARK 3 4 4.7501 - 4.3166 1.00 2712 119 0.2139 0.2741 REMARK 3 5 4.3166 - 4.0077 1.00 2650 126 0.2140 0.3049 REMARK 3 6 4.0077 - 3.7717 1.00 2717 123 0.2174 0.3248 REMARK 3 7 3.7717 - 3.5830 1.00 2617 183 0.2273 0.2862 REMARK 3 8 3.5830 - 3.4271 1.00 2697 128 0.2360 0.3018 REMARK 3 9 3.4271 - 3.2953 1.00 2630 174 0.2410 0.3342 REMARK 3 10 3.2953 - 3.1817 1.00 2630 147 0.2525 0.3097 REMARK 3 11 3.1817 - 3.0822 1.00 2645 149 0.2561 0.3435 REMARK 3 12 3.0822 - 2.9942 1.00 2718 119 0.2634 0.3737 REMARK 3 13 2.9942 - 2.9154 1.00 2681 128 0.2683 0.3220 REMARK 3 14 2.9154 - 2.8443 1.00 2628 148 0.2627 0.3639 REMARK 3 15 2.8443 - 2.7797 1.00 2638 136 0.2631 0.3282 REMARK 3 16 2.7797 - 2.7205 1.00 2681 149 0.2656 0.3355 REMARK 3 17 2.7205 - 2.6661 1.00 2629 161 0.2695 0.3615 REMARK 3 18 2.6661 - 2.6158 1.00 2683 126 0.2594 0.3346 REMARK 3 19 2.6158 - 2.5691 1.00 2596 160 0.2484 0.3205 REMARK 3 20 2.5691 - 2.5256 1.00 2707 137 0.2596 0.3344 REMARK 3 21 2.5256 - 2.4849 1.00 2642 138 0.2588 0.3143 REMARK 3 22 2.4849 - 2.4466 1.00 2662 108 0.2658 0.3844 REMARK 3 23 2.4466 - 2.4107 0.99 2632 133 0.2827 0.3469 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.407 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.965 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 10376 REMARK 3 ANGLE : 1.037 14066 REMARK 3 CHIRALITY : 0.053 1494 REMARK 3 PLANARITY : 0.007 1804 REMARK 3 DIHEDRAL : 3.655 6108 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64479 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 35.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0230 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3FCY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M AMMONIUM SULFATE, 0.075M MES REMARK 280 MONOHYDRATE PH 6.5, 7.5% (V/V), 4-DIOXANE, 25% (V/V) GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.69450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.69450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.69450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -73.85700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 127.92408 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -147.71400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 308 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 99 O HOH B 401 1.87 REMARK 500 O ALA D 81 O HOH D 401 1.97 REMARK 500 OE1 GLU D 104 ND2 ASN D 106 1.99 REMARK 500 OE1 GLU A 26 O HOH A 401 2.01 REMARK 500 OH TYR D 88 OE2 GLU D 223 2.03 REMARK 500 OH TYR B 202 O GLY B 297 2.03 REMARK 500 NH2 ARG B 137 O THR D 130 2.04 REMARK 500 NZ LYS D 16 O HOH D 402 2.06 REMARK 500 N ALA B 103 O HOH B 401 2.07 REMARK 500 O HOH B 480 O HOH B 482 2.09 REMARK 500 O SER A 286 O HOH A 402 2.09 REMARK 500 O HOH B 406 O HOH B 481 2.10 REMARK 500 OD1 ASP B 122 OG1 THR D 130 2.11 REMARK 500 O HOH C 445 O HOH C 470 2.12 REMARK 500 O HOH D 434 O HOH D 451 2.12 REMARK 500 O HOH B 411 O HOH B 473 2.12 REMARK 500 NE2 GLN C 125 O HOH C 401 2.13 REMARK 500 OE1 GLU B 164 O HOH B 402 2.13 REMARK 500 O THR C 171 O HOH C 402 2.15 REMARK 500 OH TYR B 291 O HOH B 403 2.15 REMARK 500 O LEU D 214 O HOH D 403 2.15 REMARK 500 OD1 ASN D 5 O HOH D 404 2.18 REMARK 500 OE2 GLU A 310 O HOH A 403 2.18 REMARK 500 O HOH C 435 O HOH C 457 2.19 REMARK 500 NZ LYS D 197 OE1 GLN D 312 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 89 -10.15 79.28 REMARK 500 ARG A 137 108.99 -48.74 REMARK 500 SER A 179 -109.26 71.44 REMARK 500 TYR A 202 73.50 16.83 REMARK 500 ASP A 232 59.60 -148.92 REMARK 500 LYS A 303 -41.14 75.62 REMARK 500 GLU B 39 143.28 -172.20 REMARK 500 LEU B 45 -152.74 -85.39 REMARK 500 SER B 46 115.23 -160.16 REMARK 500 LYS B 76 -82.79 -24.79 REMARK 500 HIS B 89 -22.73 85.01 REMARK 500 ASP B 91 -169.18 -123.75 REMARK 500 GLN B 116 -130.88 -104.02 REMARK 500 SER B 179 -111.19 61.96 REMARK 500 ASP B 232 59.21 -157.63 REMARK 500 LYS B 303 -43.06 74.53 REMARK 500 LEU B 308 -71.40 -71.78 REMARK 500 ARG B 309 -66.88 29.02 REMARK 500 THR C 2 -160.56 -109.48 REMARK 500 ASP C 9 37.38 -90.94 REMARK 500 LYS C 16 120.23 -38.80 REMARK 500 GLU C 77 150.16 79.33 REMARK 500 PRO C 80 152.36 -49.80 REMARK 500 HIS C 89 -28.52 80.72 REMARK 500 ASP C 91 -166.40 -123.29 REMARK 500 GLN C 116 -133.91 -104.70 REMARK 500 TYR C 143 -18.71 -48.58 REMARK 500 ASN C 172 59.51 -115.04 REMARK 500 SER C 179 -105.91 55.82 REMARK 500 TYR C 202 65.80 15.49 REMARK 500 PHE C 204 -148.42 -117.57 REMARK 500 ASP C 207 47.92 76.32 REMARK 500 SER C 286 -174.63 -67.73 REMARK 500 LYS C 303 -44.66 74.32 REMARK 500 GLU C 310 48.52 -92.48 REMARK 500 ASN C 311 -34.52 -153.27 REMARK 500 SER D 13 25.09 -145.12 REMARK 500 LEU D 15 52.92 74.44 REMARK 500 HIS D 89 -28.12 80.74 REMARK 500 CYS D 90 -168.04 -77.27 REMARK 500 ASP D 91 -159.24 -125.63 REMARK 500 GLN D 116 -132.39 -117.64 REMARK 500 GLU D 164 35.69 -98.46 REMARK 500 ASN D 172 71.76 -116.06 REMARK 500 SER D 179 -108.63 61.07 REMARK 500 TYR D 202 70.78 22.46 REMARK 500 LEU D 205 34.50 70.85 REMARK 500 ASP D 232 63.30 -157.58 REMARK 500 ILE D 250 -35.40 -37.43 REMARK 500 LYS D 268 45.13 -100.34 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS D 76 GLU D 77 145.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 7CUZ A 1 312 UNP A9QSE8 A9QSE8_LACLK 1 312 DBREF 7CUZ B 1 312 UNP A9QSE8 A9QSE8_LACLK 1 312 DBREF 7CUZ C 1 312 UNP A9QSE8 A9QSE8_LACLK 1 312 DBREF 7CUZ D 1 312 UNP A9QSE8 A9QSE8_LACLK 1 312 SEQRES 1 A 312 MET THR LYS ILE ASN ASN TRP GLN ASP TYR GLN GLY SER SEQRES 2 A 312 SER LEU LYS PRO GLU ASP PHE ASP LYS PHE TRP ASP GLU SEQRES 3 A 312 LYS ILE ASN LEU VAL SER ASN HIS GLN PHE GLU PHE GLU SEQRES 4 A 312 LEU ILE GLU LYS ASN LEU SER SER LYS VAL VAL ASN PHE SEQRES 5 A 312 TYR HIS LEU TRP PHE THR ALA ILE ASP GLY ALA LYS ILE SEQRES 6 A 312 HIS ALA GLN LEU ILE VAL PRO LYS ASN LEU LYS GLU LYS SEQRES 7 A 312 TYR PRO ALA ILE LEU GLN PHE HIS GLY TYR HIS CYS ASP SEQRES 8 A 312 SER GLY ASP TRP VAL ASP LYS ILE GLY ILE VAL ALA GLU SEQRES 9 A 312 GLY ASN VAL VAL LEU ALA LEU ASP CYS ARG GLY GLN GLY SEQRES 10 A 312 GLY LEU SER GLN ASP ASN ILE GLN THR MET GLY MET THR SEQRES 11 A 312 MET LYS GLY LEU ILE VAL ARG GLY ILE ASP GLU GLY TYR SEQRES 12 A 312 GLU ASN LEU TYR TYR VAL ARG GLN PHE MET ASP LEU ILE SEQRES 13 A 312 THR ALA THR LYS ILE LEU SER GLU PHE ASP PHE VAL ASP SEQRES 14 A 312 GLU THR ASN ILE SER ALA GLN GLY ALA SER GLN GLY GLY SEQRES 15 A 312 ALA LEU ALA VAL ALA CYS ALA ALA LEU SER PRO LEU ILE SEQRES 16 A 312 LYS LYS VAL THR ALA THR TYR PRO PHE LEU SER ASP TYR SEQRES 17 A 312 ARG LYS ALA TYR GLU LEU GLY ALA GLU GLU SER ALA PHE SEQRES 18 A 312 GLU GLU LEU PRO TYR TRP PHE GLN PHE LYS ASP PRO LEU SEQRES 19 A 312 HIS LEU ARG GLU ASP TRP PHE PHE ASN GLN LEU GLU TYR SEQRES 20 A 312 ILE ASP ILE GLN ASN LEU ALA PRO ARG ILE LYS ALA GLU SEQRES 21 A 312 VAL ILE TRP ILE LEU GLY GLY LYS ASP THR VAL VAL PRO SEQRES 22 A 312 PRO ILE THR GLN MET ALA ALA TYR ASN LYS ILE GLN SER SEQRES 23 A 312 LYS LYS SER LEU TYR VAL LEU PRO GLU TYR GLY HIS GLU SEQRES 24 A 312 TYR LEU PRO LYS ILE SER ASP TRP LEU ARG GLU ASN GLN SEQRES 1 B 312 MET THR LYS ILE ASN ASN TRP GLN ASP TYR GLN GLY SER SEQRES 2 B 312 SER LEU LYS PRO GLU ASP PHE ASP LYS PHE TRP ASP GLU SEQRES 3 B 312 LYS ILE ASN LEU VAL SER ASN HIS GLN PHE GLU PHE GLU SEQRES 4 B 312 LEU ILE GLU LYS ASN LEU SER SER LYS VAL VAL ASN PHE SEQRES 5 B 312 TYR HIS LEU TRP PHE THR ALA ILE ASP GLY ALA LYS ILE SEQRES 6 B 312 HIS ALA GLN LEU ILE VAL PRO LYS ASN LEU LYS GLU LYS SEQRES 7 B 312 TYR PRO ALA ILE LEU GLN PHE HIS GLY TYR HIS CYS ASP SEQRES 8 B 312 SER GLY ASP TRP VAL ASP LYS ILE GLY ILE VAL ALA GLU SEQRES 9 B 312 GLY ASN VAL VAL LEU ALA LEU ASP CYS ARG GLY GLN GLY SEQRES 10 B 312 GLY LEU SER GLN ASP ASN ILE GLN THR MET GLY MET THR SEQRES 11 B 312 MET LYS GLY LEU ILE VAL ARG GLY ILE ASP GLU GLY TYR SEQRES 12 B 312 GLU ASN LEU TYR TYR VAL ARG GLN PHE MET ASP LEU ILE SEQRES 13 B 312 THR ALA THR LYS ILE LEU SER GLU PHE ASP PHE VAL ASP SEQRES 14 B 312 GLU THR ASN ILE SER ALA GLN GLY ALA SER GLN GLY GLY SEQRES 15 B 312 ALA LEU ALA VAL ALA CYS ALA ALA LEU SER PRO LEU ILE SEQRES 16 B 312 LYS LYS VAL THR ALA THR TYR PRO PHE LEU SER ASP TYR SEQRES 17 B 312 ARG LYS ALA TYR GLU LEU GLY ALA GLU GLU SER ALA PHE SEQRES 18 B 312 GLU GLU LEU PRO TYR TRP PHE GLN PHE LYS ASP PRO LEU SEQRES 19 B 312 HIS LEU ARG GLU ASP TRP PHE PHE ASN GLN LEU GLU TYR SEQRES 20 B 312 ILE ASP ILE GLN ASN LEU ALA PRO ARG ILE LYS ALA GLU SEQRES 21 B 312 VAL ILE TRP ILE LEU GLY GLY LYS ASP THR VAL VAL PRO SEQRES 22 B 312 PRO ILE THR GLN MET ALA ALA TYR ASN LYS ILE GLN SER SEQRES 23 B 312 LYS LYS SER LEU TYR VAL LEU PRO GLU TYR GLY HIS GLU SEQRES 24 B 312 TYR LEU PRO LYS ILE SER ASP TRP LEU ARG GLU ASN GLN SEQRES 1 C 312 MET THR LYS ILE ASN ASN TRP GLN ASP TYR GLN GLY SER SEQRES 2 C 312 SER LEU LYS PRO GLU ASP PHE ASP LYS PHE TRP ASP GLU SEQRES 3 C 312 LYS ILE ASN LEU VAL SER ASN HIS GLN PHE GLU PHE GLU SEQRES 4 C 312 LEU ILE GLU LYS ASN LEU SER SER LYS VAL VAL ASN PHE SEQRES 5 C 312 TYR HIS LEU TRP PHE THR ALA ILE ASP GLY ALA LYS ILE SEQRES 6 C 312 HIS ALA GLN LEU ILE VAL PRO LYS ASN LEU LYS GLU LYS SEQRES 7 C 312 TYR PRO ALA ILE LEU GLN PHE HIS GLY TYR HIS CYS ASP SEQRES 8 C 312 SER GLY ASP TRP VAL ASP LYS ILE GLY ILE VAL ALA GLU SEQRES 9 C 312 GLY ASN VAL VAL LEU ALA LEU ASP CYS ARG GLY GLN GLY SEQRES 10 C 312 GLY LEU SER GLN ASP ASN ILE GLN THR MET GLY MET THR SEQRES 11 C 312 MET LYS GLY LEU ILE VAL ARG GLY ILE ASP GLU GLY TYR SEQRES 12 C 312 GLU ASN LEU TYR TYR VAL ARG GLN PHE MET ASP LEU ILE SEQRES 13 C 312 THR ALA THR LYS ILE LEU SER GLU PHE ASP PHE VAL ASP SEQRES 14 C 312 GLU THR ASN ILE SER ALA GLN GLY ALA SER GLN GLY GLY SEQRES 15 C 312 ALA LEU ALA VAL ALA CYS ALA ALA LEU SER PRO LEU ILE SEQRES 16 C 312 LYS LYS VAL THR ALA THR TYR PRO PHE LEU SER ASP TYR SEQRES 17 C 312 ARG LYS ALA TYR GLU LEU GLY ALA GLU GLU SER ALA PHE SEQRES 18 C 312 GLU GLU LEU PRO TYR TRP PHE GLN PHE LYS ASP PRO LEU SEQRES 19 C 312 HIS LEU ARG GLU ASP TRP PHE PHE ASN GLN LEU GLU TYR SEQRES 20 C 312 ILE ASP ILE GLN ASN LEU ALA PRO ARG ILE LYS ALA GLU SEQRES 21 C 312 VAL ILE TRP ILE LEU GLY GLY LYS ASP THR VAL VAL PRO SEQRES 22 C 312 PRO ILE THR GLN MET ALA ALA TYR ASN LYS ILE GLN SER SEQRES 23 C 312 LYS LYS SER LEU TYR VAL LEU PRO GLU TYR GLY HIS GLU SEQRES 24 C 312 TYR LEU PRO LYS ILE SER ASP TRP LEU ARG GLU ASN GLN SEQRES 1 D 312 MET THR LYS ILE ASN ASN TRP GLN ASP TYR GLN GLY SER SEQRES 2 D 312 SER LEU LYS PRO GLU ASP PHE ASP LYS PHE TRP ASP GLU SEQRES 3 D 312 LYS ILE ASN LEU VAL SER ASN HIS GLN PHE GLU PHE GLU SEQRES 4 D 312 LEU ILE GLU LYS ASN LEU SER SER LYS VAL VAL ASN PHE SEQRES 5 D 312 TYR HIS LEU TRP PHE THR ALA ILE ASP GLY ALA LYS ILE SEQRES 6 D 312 HIS ALA GLN LEU ILE VAL PRO LYS ASN LEU LYS GLU LYS SEQRES 7 D 312 TYR PRO ALA ILE LEU GLN PHE HIS GLY TYR HIS CYS ASP SEQRES 8 D 312 SER GLY ASP TRP VAL ASP LYS ILE GLY ILE VAL ALA GLU SEQRES 9 D 312 GLY ASN VAL VAL LEU ALA LEU ASP CYS ARG GLY GLN GLY SEQRES 10 D 312 GLY LEU SER GLN ASP ASN ILE GLN THR MET GLY MET THR SEQRES 11 D 312 MET LYS GLY LEU ILE VAL ARG GLY ILE ASP GLU GLY TYR SEQRES 12 D 312 GLU ASN LEU TYR TYR VAL ARG GLN PHE MET ASP LEU ILE SEQRES 13 D 312 THR ALA THR LYS ILE LEU SER GLU PHE ASP PHE VAL ASP SEQRES 14 D 312 GLU THR ASN ILE SER ALA GLN GLY ALA SER GLN GLY GLY SEQRES 15 D 312 ALA LEU ALA VAL ALA CYS ALA ALA LEU SER PRO LEU ILE SEQRES 16 D 312 LYS LYS VAL THR ALA THR TYR PRO PHE LEU SER ASP TYR SEQRES 17 D 312 ARG LYS ALA TYR GLU LEU GLY ALA GLU GLU SER ALA PHE SEQRES 18 D 312 GLU GLU LEU PRO TYR TRP PHE GLN PHE LYS ASP PRO LEU SEQRES 19 D 312 HIS LEU ARG GLU ASP TRP PHE PHE ASN GLN LEU GLU TYR SEQRES 20 D 312 ILE ASP ILE GLN ASN LEU ALA PRO ARG ILE LYS ALA GLU SEQRES 21 D 312 VAL ILE TRP ILE LEU GLY GLY LYS ASP THR VAL VAL PRO SEQRES 22 D 312 PRO ILE THR GLN MET ALA ALA TYR ASN LYS ILE GLN SER SEQRES 23 D 312 LYS LYS SER LEU TYR VAL LEU PRO GLU TYR GLY HIS GLU SEQRES 24 D 312 TYR LEU PRO LYS ILE SER ASP TRP LEU ARG GLU ASN GLN FORMUL 5 HOH *321(H2 O) HELIX 1 AA1 LYS A 3 TRP A 7 5 5 HELIX 2 AA2 ASP A 19 ASN A 33 1 15 HELIX 3 AA3 ASP A 94 ASP A 97 5 4 HELIX 4 AA4 LYS A 98 GLU A 104 1 7 HELIX 5 AA5 GLY A 138 ASN A 145 5 8 HELIX 6 AA6 LEU A 146 GLU A 164 1 19 HELIX 7 AA7 SER A 179 SER A 192 1 14 HELIX 8 AA8 ASP A 207 LEU A 214 1 8 HELIX 9 AA9 GLU A 222 ASP A 232 1 11 HELIX 10 AB1 ARG A 237 GLU A 246 1 10 HELIX 11 AB2 ASP A 249 ALA A 254 1 6 HELIX 12 AB3 PRO A 255 ILE A 257 5 3 HELIX 13 AB4 PRO A 273 ASN A 282 1 10 HELIX 14 AB5 LYS A 303 ARG A 309 1 7 HELIX 15 AB6 ASN B 6 TYR B 10 5 5 HELIX 16 AB7 ASP B 19 ASN B 33 1 15 HELIX 17 AB8 ASP B 94 ASP B 97 5 4 HELIX 18 AB9 LYS B 98 ALA B 103 1 6 HELIX 19 AC1 GLY B 138 ASN B 145 5 8 HELIX 20 AC2 LEU B 146 GLU B 164 1 19 HELIX 21 AC3 SER B 179 SER B 192 1 14 HELIX 22 AC4 ASP B 207 LEU B 214 1 8 HELIX 23 AC5 GLU B 222 ASP B 232 1 11 HELIX 24 AC6 ARG B 237 GLU B 246 1 10 HELIX 25 AC7 TYR B 247 ILE B 257 5 11 HELIX 26 AC8 PRO B 273 ASN B 282 1 10 HELIX 27 AC9 LYS B 303 ARG B 309 1 7 HELIX 28 AD1 GLU B 310 GLN B 312 5 3 HELIX 29 AD2 LYS C 3 GLN C 8 5 6 HELIX 30 AD3 ASP C 19 HIS C 34 1 16 HELIX 31 AD4 ASP C 94 ASP C 97 5 4 HELIX 32 AD5 LYS C 98 GLU C 104 1 7 HELIX 33 AD6 GLY C 138 ASN C 145 5 8 HELIX 34 AD7 LEU C 146 GLU C 164 1 19 HELIX 35 AD8 SER C 179 SER C 192 1 14 HELIX 36 AD9 ASP C 207 LEU C 214 1 8 HELIX 37 AE1 GLU C 222 ASP C 232 1 11 HELIX 38 AE2 ARG C 237 TYR C 247 1 11 HELIX 39 AE3 ASP C 249 ALA C 254 1 6 HELIX 40 AE4 PRO C 255 ILE C 257 5 3 HELIX 41 AE5 PRO C 273 ASN C 282 1 10 HELIX 42 AE6 LYS C 303 LEU C 308 1 6 HELIX 43 AE7 ARG C 309 ASN C 311 5 3 HELIX 44 AE8 ILE D 4 ASP D 9 1 6 HELIX 45 AE9 ASP D 19 HIS D 34 1 16 HELIX 46 AF1 TRP D 95 ASP D 97 5 3 HELIX 47 AF2 LYS D 98 GLU D 104 1 7 HELIX 48 AF3 GLY D 138 ASN D 145 5 8 HELIX 49 AF4 LEU D 146 GLU D 164 1 19 HELIX 50 AF5 SER D 179 SER D 192 1 14 HELIX 51 AF6 ASP D 207 LEU D 214 1 8 HELIX 52 AF7 GLU D 222 ASP D 232 1 11 HELIX 53 AF8 ARG D 237 GLU D 246 1 10 HELIX 54 AF9 TYR D 247 ILE D 257 5 11 HELIX 55 AG1 PRO D 273 LYS D 283 1 11 HELIX 56 AG2 LYS D 303 GLN D 312 1 10 SHEET 1 AA1 9 PHE A 38 GLU A 42 0 SHEET 2 AA1 9 VAL A 50 THR A 58 -1 O HIS A 54 N ILE A 41 SHEET 3 AA1 9 LYS A 64 PRO A 72 -1 O ILE A 65 N PHE A 57 SHEET 4 AA1 9 VAL A 107 LEU A 111 -1 O ALA A 110 N GLN A 68 SHEET 5 AA1 9 TYR A 79 PHE A 85 1 N ILE A 82 O VAL A 107 SHEET 6 AA1 9 VAL A 168 ALA A 178 1 O SER A 174 N ALA A 81 SHEET 7 AA1 9 LYS A 197 THR A 201 1 O THR A 201 N GLY A 177 SHEET 8 AA1 9 GLU A 260 GLY A 266 1 O GLU A 260 N VAL A 198 SHEET 9 AA1 9 LYS A 288 LEU A 293 1 O TYR A 291 N TRP A 263 SHEET 1 AA2 9 PHE B 38 LYS B 43 0 SHEET 2 AA2 9 VAL B 50 THR B 58 -1 O PHE B 52 N LYS B 43 SHEET 3 AA2 9 LYS B 64 PRO B 72 -1 O LEU B 69 N TYR B 53 SHEET 4 AA2 9 VAL B 107 LEU B 111 -1 O ALA B 110 N GLN B 68 SHEET 5 AA2 9 TYR B 79 PHE B 85 1 N ILE B 82 O VAL B 107 SHEET 6 AA2 9 VAL B 168 ALA B 178 1 O ASP B 169 N TYR B 79 SHEET 7 AA2 9 LYS B 197 THR B 201 1 O THR B 199 N ALA B 175 SHEET 8 AA2 9 GLU B 260 GLY B 266 1 O ILE B 262 N VAL B 198 SHEET 9 AA2 9 LYS B 288 LEU B 293 1 O TYR B 291 N LEU B 265 SHEET 1 AA3 9 PHE C 38 GLU C 42 0 SHEET 2 AA3 9 VAL C 50 THR C 58 -1 O HIS C 54 N ILE C 41 SHEET 3 AA3 9 LYS C 64 PRO C 72 -1 O LEU C 69 N TYR C 53 SHEET 4 AA3 9 VAL C 107 LEU C 111 -1 O ALA C 110 N GLN C 68 SHEET 5 AA3 9 TYR C 79 PHE C 85 1 N ILE C 82 O VAL C 107 SHEET 6 AA3 9 VAL C 168 ALA C 178 1 O SER C 174 N LEU C 83 SHEET 7 AA3 9 LYS C 197 THR C 201 1 O THR C 201 N GLY C 177 SHEET 8 AA3 9 GLU C 260 GLY C 266 1 O ILE C 262 N VAL C 198 SHEET 9 AA3 9 LYS C 288 LEU C 293 1 O TYR C 291 N TRP C 263 SHEET 1 AA4 9 PHE D 38 GLU D 42 0 SHEET 2 AA4 9 VAL D 50 THR D 58 -1 O HIS D 54 N ILE D 41 SHEET 3 AA4 9 LYS D 64 PRO D 72 -1 O VAL D 71 N ASN D 51 SHEET 4 AA4 9 VAL D 107 LEU D 111 -1 O ALA D 110 N GLN D 68 SHEET 5 AA4 9 TYR D 79 PHE D 85 1 N ILE D 82 O VAL D 107 SHEET 6 AA4 9 VAL D 168 ALA D 178 1 O SER D 174 N LEU D 83 SHEET 7 AA4 9 LYS D 197 THR D 201 1 O THR D 199 N ALA D 175 SHEET 8 AA4 9 GLU D 260 GLY D 266 1 O GLU D 260 N VAL D 198 SHEET 9 AA4 9 LYS D 288 LEU D 293 1 O SER D 289 N TRP D 263 CRYST1 147.714 147.714 135.389 90.00 90.00 120.00 P 63 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006770 0.003909 0.000000 0.00000 SCALE2 0.000000 0.007817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007386 0.00000