HEADER NUCLEAR PROTEIN 25-AUG-20 7CV9 TITLE RNA METHYLTRANSFERASE METTL4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLTRANSFERASE-LIKE PROTEIN 2; COMPND 3 CHAIN: C, A; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT1G19340, F18O14.6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS RNA METHYLTRANSFERASE, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.LUO,J.MA REVDAT 2 12-OCT-22 7CV9 1 JRNL REVDAT 1 01-SEP-21 7CV9 0 JRNL AUTH Q.LUO,J.MO,H.CHEN,Z.HU,B.WANG,J.WU,Z.LIANG,W.XIE,K.DU, JRNL AUTH 2 M.PENG,Y.LI,T.LI,Y.ZHANG,X.SHI,W.H.SHEN,Y.SHI,A.DONG,H.WANG, JRNL AUTH 3 J.MA JRNL TITL STRUCTURAL INSIGHTS INTO MOLECULAR MECHANISM FOR JRNL TITL 2 N6-ADENOSINE METHYLATION BY MT-A70 FAMILY METHYLTRANSFERASE JRNL TITL 3 METTL4 JRNL REF NAT COMMUN V. 13 5636 2022 JRNL REFN ESSN 2041-1723 JRNL DOI 10.1038/S41467-022-33277-X REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 38972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0000 - 5.9039 1.00 2791 134 0.1880 0.2318 REMARK 3 2 5.9039 - 4.6919 1.00 2740 141 0.1688 0.1879 REMARK 3 3 4.6919 - 4.1005 1.00 2735 138 0.1599 0.2004 REMARK 3 4 4.1005 - 3.7263 1.00 2673 151 0.1826 0.2299 REMARK 3 5 3.7263 - 3.4597 0.99 2712 142 0.2059 0.2477 REMARK 3 6 3.4597 - 3.2559 0.99 2703 144 0.2275 0.2724 REMARK 3 7 3.2559 - 3.0930 0.99 2686 145 0.2263 0.2633 REMARK 3 8 3.0930 - 2.9585 0.99 2701 123 0.2479 0.3091 REMARK 3 9 2.9585 - 2.8447 0.99 2643 169 0.2654 0.3287 REMARK 3 10 2.8447 - 2.7466 0.97 2587 157 0.2699 0.3189 REMARK 3 11 2.7466 - 2.6608 0.97 2630 140 0.2738 0.3018 REMARK 3 12 2.6608 - 2.5848 0.97 2615 147 0.2998 0.3036 REMARK 3 13 2.5848 - 2.5168 0.93 2519 150 0.3164 0.3707 REMARK 3 14 2.5168 - 2.4554 0.83 2245 111 0.3245 0.3805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5905 REMARK 3 ANGLE : 0.974 8031 REMARK 3 CHIRALITY : 0.054 871 REMARK 3 PLANARITY : 0.006 1017 REMARK 3 DIHEDRAL : 9.247 3448 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -15.5653 31.0272 16.8570 REMARK 3 T TENSOR REMARK 3 T11: 0.2782 T22: 0.2791 REMARK 3 T33: 0.2947 T12: -0.0193 REMARK 3 T13: 0.0656 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 0.4631 L22: 1.8735 REMARK 3 L33: 2.0923 L12: -0.0365 REMARK 3 L13: 0.4248 L23: 0.5910 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.0190 S13: 0.0028 REMARK 3 S21: 0.1158 S22: -0.0494 S23: 0.1079 REMARK 3 S31: -0.0924 S32: 0.0360 S33: 0.0242 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 2 OR (RESID 3 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR RESID 4 THROUGH REMARK 3 48 OR RESID 86 THROUGH 99 OR (RESID 100 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD )) OR REMARK 3 RESID 101 THROUGH 106 OR (RESID 107 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 108 THROUGH 112 OR REMARK 3 (RESID 113 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 114 REMARK 3 THROUGH 115 OR (RESID 116 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 136 THROUGH 141 OR (RESID 142 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 143 THROUGH 158 REMARK 3 OR RESID 172 THROUGH 197 OR (RESID 198 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 199 THROUGH 215 REMARK 3 OR (RESID 216 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 217 THROUGH 335 OR (RESID 336 THROUGH 337 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 338 OR (RESID REMARK 3 339 THROUGH 343 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 344 THROUGH 381 OR (RESID 382 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 383 THROUGH 414)) REMARK 3 SELECTION : (CHAIN C AND (RESID 2 THROUGH 39 OR REMARK 3 (RESID 40 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 41 REMARK 3 THROUGH 48 OR RESID 86 THROUGH 158 OR REMARK 3 (RESID 172 THROUGH 173 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 174 THROUGH 237 OR RESID 245 OR REMARK 3 (RESID 246 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 247 REMARK 3 THROUGH 277 OR (RESID 278 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 279 OR (RESID 280 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 281 THROUGH 315 OR (RESID 316 REMARK 3 THROUGH 317 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 321 OR (RESID 322 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 323 THROUGH 339 OR RESID 343 REMARK 3 THROUGH 414)) REMARK 3 ATOM PAIRS NUMBER : 2930 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 7CV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97776 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39010 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1600 MM MAGNESIUM SULFATE 100 MM MES/ REMARK 280 SODIUM HYDROXIDE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.77250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 ARG C 49 REMARK 465 PHE C 50 REMARK 465 PHE C 51 REMARK 465 ASN C 52 REMARK 465 SER C 53 REMARK 465 LYS C 54 REMARK 465 GLN C 55 REMARK 465 LEU C 56 REMARK 465 ASN C 57 REMARK 465 GLN C 58 REMARK 465 HIS C 59 REMARK 465 SER C 60 REMARK 465 SER C 61 REMARK 465 GLU C 62 REMARK 465 SER C 63 REMARK 465 ASN C 64 REMARK 465 PRO C 65 REMARK 465 LYS C 66 REMARK 465 LYS C 67 REMARK 465 ARG C 68 REMARK 465 LYS C 69 REMARK 465 ARG C 70 REMARK 465 LYS C 71 REMARK 465 GLN C 72 REMARK 465 LYS C 73 REMARK 465 ASN C 74 REMARK 465 SER C 75 REMARK 465 SER C 76 REMARK 465 PHE C 77 REMARK 465 HIS C 78 REMARK 465 GLY C 117 REMARK 465 LEU C 118 REMARK 465 SER C 119 REMARK 465 ASP C 120 REMARK 465 ASP C 121 REMARK 465 ASN C 122 REMARK 465 ASP C 123 REMARK 465 ASP C 124 REMARK 465 ASP C 125 REMARK 465 ASP C 126 REMARK 465 SER C 127 REMARK 465 SER C 128 REMARK 465 LEU C 129 REMARK 465 LEU C 130 REMARK 465 ASN C 131 REMARK 465 LYS C 132 REMARK 465 CYS C 133 REMARK 465 CYS C 134 REMARK 465 ASP C 135 REMARK 465 ASN C 159 REMARK 465 LEU C 160 REMARK 465 HIS C 161 REMARK 465 CYS C 162 REMARK 465 ASP C 163 REMARK 465 ASN C 164 REMARK 465 GLU C 165 REMARK 465 GLY C 166 REMARK 465 GLU C 167 REMARK 465 SER C 168 REMARK 465 CYS C 169 REMARK 465 ASN C 170 REMARK 465 GLU C 171 REMARK 465 MET A 1 REMARK 465 LYS A 54 REMARK 465 GLN A 55 REMARK 465 LEU A 56 REMARK 465 ASN A 57 REMARK 465 GLN A 58 REMARK 465 HIS A 59 REMARK 465 SER A 60 REMARK 465 SER A 61 REMARK 465 GLU A 62 REMARK 465 SER A 63 REMARK 465 ASN A 64 REMARK 465 PRO A 65 REMARK 465 LYS A 66 REMARK 465 LYS A 67 REMARK 465 ARG A 68 REMARK 465 LYS A 69 REMARK 465 ARG A 70 REMARK 465 LYS A 71 REMARK 465 GLN A 72 REMARK 465 LYS A 73 REMARK 465 ASN A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 PHE A 77 REMARK 465 HIS A 78 REMARK 465 LEU A 79 REMARK 465 PRO A 80 REMARK 465 SER A 81 REMARK 465 VAL A 82 REMARK 465 GLY A 83 REMARK 465 GLU A 84 REMARK 465 GLN A 85 REMARK 465 ASN A 159 REMARK 465 LEU A 160 REMARK 465 HIS A 161 REMARK 465 CYS A 162 REMARK 465 ASP A 163 REMARK 465 ASN A 164 REMARK 465 GLU A 165 REMARK 465 GLY A 166 REMARK 465 GLU A 167 REMARK 465 SER A 168 REMARK 465 CYS A 169 REMARK 465 ASN A 170 REMARK 465 ASN A 238 REMARK 465 ALA A 239 REMARK 465 SER A 240 REMARK 465 ALA A 241 REMARK 465 HIS A 242 REMARK 465 GLN A 243 REMARK 465 LYS A 244 REMARK 465 LEU A 318 REMARK 465 VAL A 319 REMARK 465 HIS A 320 REMARK 465 GLU A 340 REMARK 465 LYS A 341 REMARK 465 ARG A 342 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 3 CD CE NZ REMARK 470 GLU C 20 CG CD OE1 OE2 REMARK 470 GLN C 85 CG CD OE1 NE2 REMARK 470 LYS C 100 CE NZ REMARK 470 LYS C 107 CG CD CE NZ REMARK 470 SER C 113 OG REMARK 470 LYS C 116 CG CD CE NZ REMARK 470 GLU C 142 CG CD OE1 OE2 REMARK 470 ARG C 173 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 193 CG CD OE1 OE2 REMARK 470 ARG C 198 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 216 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 222 CG CD CE NZ REMARK 470 LEU C 336 CG CD1 CD2 REMARK 470 SER C 339 OG REMARK 470 GLU C 340 CG CD OE1 OE2 REMARK 470 LYS C 341 CG CD CE NZ REMARK 470 SER C 343 OG REMARK 470 LYS C 346 CG CD CE NZ REMARK 470 ARG C 382 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 413 CG CD CE NZ REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 122 CG OD1 ND2 REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 ASP A 125 CG OD1 OD2 REMARK 470 ASP A 126 CG OD1 OD2 REMARK 470 SER A 127 OG REMARK 470 SER A 128 OG REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 ARG A 278 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LEU A 316 CG CD1 CD2 REMARK 470 ASP A 317 CG OD1 OD2 REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 LYS A 413 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 179 53.09 39.88 REMARK 500 LEU C 336 -81.80 -108.92 REMARK 500 ASP C 349 18.70 -142.60 REMARK 500 GLU C 401 50.72 -150.60 REMARK 500 ASN A 52 -157.31 -100.67 REMARK 500 ASP A 135 -166.69 -102.67 REMARK 500 ASP A 349 20.92 -143.33 REMARK 500 GLU A 401 51.53 -152.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 DBREF 7CV9 C 1 414 UNP Q8LFA9 METL2_ARATH 1 414 DBREF 7CV9 A 1 414 UNP Q8LFA9 METL2_ARATH 1 414 SEQRES 1 C 414 MET ALA LYS THR ASP LYS LEU ALA GLN PHE LEU ASP SER SEQRES 2 C 414 GLY ILE TYR GLU SER ASP GLU PHE ASN TRP PHE PHE LEU SEQRES 3 C 414 ASP THR VAL ARG ILE THR ASN ARG SER TYR THR ARG PHE SEQRES 4 C 414 LYS VAL SER PRO SER ALA TYR TYR SER ARG PHE PHE ASN SEQRES 5 C 414 SER LYS GLN LEU ASN GLN HIS SER SER GLU SER ASN PRO SEQRES 6 C 414 LYS LYS ARG LYS ARG LYS GLN LYS ASN SER SER PHE HIS SEQRES 7 C 414 LEU PRO SER VAL GLY GLU GLN ALA SER ASN LEU ARG HIS SEQRES 8 C 414 GLN GLU ALA ARG LEU PHE LEU SER LYS ALA HIS GLU SER SEQRES 9 C 414 PHE LEU LYS GLU ILE GLU LEU LEU SER LEU THR LYS GLY SEQRES 10 C 414 LEU SER ASP ASP ASN ASP ASP ASP ASP SER SER LEU LEU SEQRES 11 C 414 ASN LYS CYS CYS ASP ASP GLU VAL SER PHE ILE GLU LEU SEQRES 12 C 414 GLY GLY VAL TRP GLN ALA PRO PHE TYR GLU ILE THR LEU SEQRES 13 C 414 SER PHE ASN LEU HIS CYS ASP ASN GLU GLY GLU SER CYS SEQRES 14 C 414 ASN GLU GLN ARG VAL PHE GLN VAL PHE ASN ASN LEU VAL SEQRES 15 C 414 VAL ASN GLU ILE GLY GLU GLU VAL GLU ALA GLU PHE SER SEQRES 16 C 414 ASN ARG ARG TYR ILE MET PRO ARG ASN SER CYS PHE TYR SEQRES 17 C 414 MET SER ASP LEU HIS HIS ILE ARG ASN LEU VAL PRO ALA SEQRES 18 C 414 LYS SER GLU GLU GLY TYR ASN LEU ILE VAL ILE ASP PRO SEQRES 19 C 414 PRO TRP GLU ASN ALA SER ALA HIS GLN LYS SER LYS TYR SEQRES 20 C 414 PRO THR LEU PRO ASN GLN TYR PHE LEU SER LEU PRO ILE SEQRES 21 C 414 LYS GLN LEU ALA HIS ALA GLU GLY ALA LEU VAL ALA LEU SEQRES 22 C 414 TRP VAL THR ASN ARG GLU LYS LEU LEU SER PHE VAL GLU SEQRES 23 C 414 LYS GLU LEU PHE PRO ALA TRP GLY ILE LYS TYR VAL ALA SEQRES 24 C 414 THR MET TYR TRP LEU LYS VAL LYS PRO ASP GLY THR LEU SEQRES 25 C 414 ILE CYS ASP LEU ASP LEU VAL HIS HIS LYS PRO TYR GLU SEQRES 26 C 414 TYR LEU LEU LEU GLY TYR HIS PHE THR GLU LEU ALA GLY SEQRES 27 C 414 SER GLU LYS ARG SER ASP PHE LYS LEU LEU ASP LYS ASN SEQRES 28 C 414 GLN ILE ILE MET SER ILE PRO GLY ASP PHE SER ARG LYS SEQRES 29 C 414 PRO PRO ILE GLY ASP ILE LEU LEU LYS HIS THR PRO GLY SEQRES 30 C 414 SER GLN PRO ALA ARG CYS LEU GLU LEU PHE ALA ARG GLU SEQRES 31 C 414 MET ALA ALA GLY TRP THR SER TRP GLY ASN GLU PRO LEU SEQRES 32 C 414 HIS PHE GLN ASP SER ARG TYR PHE LEU LYS VAL SEQRES 1 A 414 MET ALA LYS THR ASP LYS LEU ALA GLN PHE LEU ASP SER SEQRES 2 A 414 GLY ILE TYR GLU SER ASP GLU PHE ASN TRP PHE PHE LEU SEQRES 3 A 414 ASP THR VAL ARG ILE THR ASN ARG SER TYR THR ARG PHE SEQRES 4 A 414 LYS VAL SER PRO SER ALA TYR TYR SER ARG PHE PHE ASN SEQRES 5 A 414 SER LYS GLN LEU ASN GLN HIS SER SER GLU SER ASN PRO SEQRES 6 A 414 LYS LYS ARG LYS ARG LYS GLN LYS ASN SER SER PHE HIS SEQRES 7 A 414 LEU PRO SER VAL GLY GLU GLN ALA SER ASN LEU ARG HIS SEQRES 8 A 414 GLN GLU ALA ARG LEU PHE LEU SER LYS ALA HIS GLU SER SEQRES 9 A 414 PHE LEU LYS GLU ILE GLU LEU LEU SER LEU THR LYS GLY SEQRES 10 A 414 LEU SER ASP ASP ASN ASP ASP ASP ASP SER SER LEU LEU SEQRES 11 A 414 ASN LYS CYS CYS ASP ASP GLU VAL SER PHE ILE GLU LEU SEQRES 12 A 414 GLY GLY VAL TRP GLN ALA PRO PHE TYR GLU ILE THR LEU SEQRES 13 A 414 SER PHE ASN LEU HIS CYS ASP ASN GLU GLY GLU SER CYS SEQRES 14 A 414 ASN GLU GLN ARG VAL PHE GLN VAL PHE ASN ASN LEU VAL SEQRES 15 A 414 VAL ASN GLU ILE GLY GLU GLU VAL GLU ALA GLU PHE SER SEQRES 16 A 414 ASN ARG ARG TYR ILE MET PRO ARG ASN SER CYS PHE TYR SEQRES 17 A 414 MET SER ASP LEU HIS HIS ILE ARG ASN LEU VAL PRO ALA SEQRES 18 A 414 LYS SER GLU GLU GLY TYR ASN LEU ILE VAL ILE ASP PRO SEQRES 19 A 414 PRO TRP GLU ASN ALA SER ALA HIS GLN LYS SER LYS TYR SEQRES 20 A 414 PRO THR LEU PRO ASN GLN TYR PHE LEU SER LEU PRO ILE SEQRES 21 A 414 LYS GLN LEU ALA HIS ALA GLU GLY ALA LEU VAL ALA LEU SEQRES 22 A 414 TRP VAL THR ASN ARG GLU LYS LEU LEU SER PHE VAL GLU SEQRES 23 A 414 LYS GLU LEU PHE PRO ALA TRP GLY ILE LYS TYR VAL ALA SEQRES 24 A 414 THR MET TYR TRP LEU LYS VAL LYS PRO ASP GLY THR LEU SEQRES 25 A 414 ILE CYS ASP LEU ASP LEU VAL HIS HIS LYS PRO TYR GLU SEQRES 26 A 414 TYR LEU LEU LEU GLY TYR HIS PHE THR GLU LEU ALA GLY SEQRES 27 A 414 SER GLU LYS ARG SER ASP PHE LYS LEU LEU ASP LYS ASN SEQRES 28 A 414 GLN ILE ILE MET SER ILE PRO GLY ASP PHE SER ARG LYS SEQRES 29 A 414 PRO PRO ILE GLY ASP ILE LEU LEU LYS HIS THR PRO GLY SEQRES 30 A 414 SER GLN PRO ALA ARG CYS LEU GLU LEU PHE ALA ARG GLU SEQRES 31 A 414 MET ALA ALA GLY TRP THR SER TRP GLY ASN GLU PRO LEU SEQRES 32 A 414 HIS PHE GLN ASP SER ARG TYR PHE LEU LYS VAL HET SAH C 501 52 HET SAH A 501 26 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *22(H2 O) HELIX 1 AA1 ALA C 2 GLY C 14 1 13 HELIX 2 AA2 ASP C 27 ARG C 34 1 8 HELIX 3 AA3 SER C 42 SER C 48 1 7 HELIX 4 AA4 GLU C 84 GLU C 108 1 25 HELIX 5 AA5 GLU C 108 LYS C 116 1 9 HELIX 6 AA6 SER C 139 GLY C 145 1 7 HELIX 7 AA7 GLN C 148 PHE C 151 5 4 HELIX 8 AA8 ASP C 211 VAL C 219 5 9 HELIX 9 AA9 ASN C 252 SER C 257 1 6 HELIX 10 AB1 PRO C 259 ALA C 264 1 6 HELIX 11 AB2 ARG C 278 GLU C 288 1 11 HELIX 12 AB3 GLU C 288 TRP C 293 1 6 HELIX 13 AB4 GLY C 359 ARG C 363 5 5 HELIX 14 AB5 ILE C 367 LYS C 373 1 7 HELIX 15 AB6 LEU C 403 ARG C 409 5 7 HELIX 16 AB7 LYS A 3 GLY A 14 1 12 HELIX 17 AB8 ASP A 27 ARG A 34 1 8 HELIX 18 AB9 SER A 42 TYR A 47 1 6 HELIX 19 AC1 SER A 87 LYS A 107 1 21 HELIX 20 AC2 GLU A 108 SER A 119 1 12 HELIX 21 AC3 ASP A 126 LYS A 132 1 7 HELIX 22 AC4 SER A 139 GLY A 144 1 6 HELIX 23 AC5 GLN A 148 PHE A 151 5 4 HELIX 24 AC6 ASP A 211 VAL A 219 5 9 HELIX 25 AC7 ASN A 252 SER A 257 1 6 HELIX 26 AC8 PRO A 259 ALA A 264 1 6 HELIX 27 AC9 ARG A 278 GLU A 288 1 11 HELIX 28 AD1 GLU A 288 TRP A 293 1 6 HELIX 29 AD2 ILE A 367 LEU A 372 1 6 HELIX 30 AD3 LYS A 373 THR A 375 5 3 HELIX 31 AD4 LEU A 403 PHE A 411 5 9 SHEET 1 AA111 ILE C 15 GLU C 17 0 SHEET 2 AA111 TRP C 23 LEU C 26 -1 O PHE C 25 N TYR C 16 SHEET 3 AA111 GLN C 352 SER C 356 1 O MET C 355 N LEU C 26 SHEET 4 AA111 LYS C 296 LYS C 305 1 N TYR C 302 O ILE C 354 SHEET 5 AA111 TYR C 324 HIS C 332 -1 O LEU C 327 N MET C 301 SHEET 6 AA111 ALA C 269 VAL C 275 -1 N VAL C 271 O GLY C 330 SHEET 7 AA111 LEU C 229 ILE C 232 1 N ILE C 230 O ALA C 272 SHEET 8 AA111 CYS C 383 LEU C 386 1 O LEU C 384 N LEU C 229 SHEET 9 AA111 TRP C 395 GLY C 399 1 O TRP C 398 N GLU C 385 SHEET 10 AA111 SER C 205 MET C 209 1 N CYS C 206 O SER C 397 SHEET 11 AA111 LEU C 181 ASN C 184 -1 N VAL C 182 O PHE C 207 SHEET 1 AA2 2 PHE C 39 VAL C 41 0 SHEET 2 AA2 2 PHE C 411 LYS C 413 -1 O LEU C 412 N LYS C 40 SHEET 1 AA3 4 ARG C 173 GLN C 176 0 SHEET 2 AA3 4 GLU C 153 LEU C 156 -1 N LEU C 156 O ARG C 173 SHEET 3 AA3 4 VAL C 190 PHE C 194 -1 O GLU C 193 N THR C 155 SHEET 4 AA3 4 ARG C 197 MET C 201 -1 O TYR C 199 N ALA C 192 SHEET 1 AA411 ILE A 15 GLU A 17 0 SHEET 2 AA411 TRP A 23 LEU A 26 -1 O PHE A 25 N TYR A 16 SHEET 3 AA411 GLN A 352 SER A 356 1 O MET A 355 N LEU A 26 SHEET 4 AA411 LYS A 296 LYS A 305 1 N TYR A 302 O ILE A 354 SHEET 5 AA411 TYR A 324 HIS A 332 -1 O LEU A 327 N MET A 301 SHEET 6 AA411 ALA A 269 VAL A 275 -1 N VAL A 271 O GLY A 330 SHEET 7 AA411 LEU A 229 ILE A 232 1 N ILE A 230 O ALA A 272 SHEET 8 AA411 CYS A 383 LEU A 386 1 O LEU A 386 N VAL A 231 SHEET 9 AA411 TRP A 395 GLY A 399 1 O TRP A 398 N GLU A 385 SHEET 10 AA411 SER A 205 MET A 209 1 N TYR A 208 O SER A 397 SHEET 11 AA411 VAL A 182 ASN A 184 -1 N ASN A 184 O SER A 205 SHEET 1 AA5 2 PHE A 39 LYS A 40 0 SHEET 2 AA5 2 LEU A 412 LYS A 413 -1 O LEU A 412 N LYS A 40 SHEET 1 AA6 4 ARG A 173 GLN A 176 0 SHEET 2 AA6 4 GLU A 153 LEU A 156 -1 N ILE A 154 O PHE A 175 SHEET 3 AA6 4 VAL A 190 PHE A 194 -1 O GLU A 193 N THR A 155 SHEET 4 AA6 4 ARG A 197 MET A 201 -1 O MET A 201 N VAL A 190 CISPEP 1 GLN C 379 PRO C 380 0 -19.06 SITE 1 AC1 17 ILE C 141 ASP C 211 LEU C 212 ASP C 233 SITE 2 AC1 17 PRO C 234 PRO C 235 PRO C 248 LEU C 250 SITE 3 AC1 17 SER C 362 ARG C 363 LYS C 364 GLU C 385 SITE 4 AC1 17 PHE C 387 ARG C 389 ASN C 400 GLU C 401 SITE 5 AC1 17 HOH C 611 SITE 1 AC2 18 ILE A 141 SER A 210 ASP A 211 LEU A 212 SITE 2 AC2 18 ASP A 233 PRO A 235 TYR A 247 PRO A 248 SITE 3 AC2 18 SER A 362 ARG A 363 LYS A 364 PHE A 387 SITE 4 AC2 18 ARG A 389 TRP A 398 ASN A 400 GLU A 401 SITE 5 AC2 18 HOH A 602 HOH A 608 SITE 1 AC3 7 THR A 32 VAL A 41 ARG A 363 GLU A 390 SITE 2 AC3 7 PHE A 405 TYR A 410 PHE A 411 SITE 1 AC4 4 LYS A 246 ARG A 389 GLU A 401 HIS A 404 SITE 1 AC5 5 PRO A 366 ILE A 367 GLY A 368 GLU A 385 SITE 2 AC5 5 ALA A 392 CRYST1 63.603 93.545 96.612 90.00 104.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015723 0.000000 0.004149 0.00000 SCALE2 0.000000 0.010690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010705 0.00000