HEADER    TRANSCRIPTION                           28-AUG-20   7CWH              
TITLE     STRUCTURAL BASIS OF RACK7 PHD TO READ A PEDIATRIC GLIOBLASTOMA-       
TITLE    2 ASSOCIATED HISTONE MUTATION H3.3G34R                                 
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PEPTIDE FROM HISTONE H3.3;                                 
COMPND   3 CHAIN: A;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 MUTATION: YES;                                                       
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: PROTEIN KINASE C-BINDING PROTEIN 1;                        
COMPND   8 CHAIN: B;                                                            
COMPND   9 FRAGMENT: PHD-TYPE;                                                  
COMPND  10 SYNONYM: RACK7;                                                      
COMPND  11 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   4 ORGANISM_COMMON: HUMAN;                                              
SOURCE   5 ORGANISM_TAXID: 9606;                                                
SOURCE   6 MOL_ID: 2;                                                           
SOURCE   7 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   8 ORGANISM_COMMON: HUMAN;                                              
SOURCE   9 ORGANISM_TAXID: 9606;                                                
SOURCE  10 GENE: ZMYND8;                                                        
SOURCE  11 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  12 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    RACK7, PHD, H3.3G34R, TRANSCRIPTION                                   
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    W.X.LAN,Z.LI,F.F.JIAO,C.X.WANG,R.GUO,C.Y.CAO                          
REVDAT   2   01-MAY-24 7CWH    1       REMARK                                   
REVDAT   1   26-MAY-21 7CWH    0                                                
JRNL        AUTH   W.X.LAN,Z.LI,F.F.JIAO,C.X.WANG,R.GUO,C.Y.CAO                 
JRNL        TITL   STRUCTURAL BASIS OF RACK7 PHD DOMAIN TO READ A PEDIATRIC     
JRNL        TITL 2 GLIOBLASTOMA‐ASSOCIATED HISTONE MUTATION H3.3G34R      
JRNL        REF    CHIN.J.CHEM.                               2021              
JRNL        REFN                   ISSN 1001-604X                               
JRNL        DOI    10.1002/CJOC.202100277                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER                                              
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 7CWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-20.                  
REMARK 100 THE DEPOSITION ID IS D_1300018265.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 293                                
REMARK 210  PH                             : 7.4                                
REMARK 210  IONIC STRENGTH                 : 500                                
REMARK 210  PRESSURE                       : 1 ATM                              
REMARK 210  SAMPLE CONTENTS                : 0.7 MM [U-13C; U-15N] RACK7 PHD,   
REMARK 210                                   1.4 MM H3.3G34R, 100 MM SODIUM     
REMARK 210                                   CHLORIDE, 0.02 % W/V SODIUM        
REMARK 210                                   AZIDE, 50 MM SODIUM PHOSPHATE, 2   
REMARK 210                                   MM [U-2H] DDT, 90% H2O/10% D2O;    
REMARK 210                                   0.7 MM [U-13C; U-15N] RACK7 PHD,   
REMARK 210                                   1.4 MM H3.3G34R, 100 MM SODIUM     
REMARK 210                                   CHLORIDE, 0.02 % W/V SODIUM        
REMARK 210                                   AZIDE, 50 MM SODIUM PHOSPHATE, 2   
REMARK 210                                   MM [U-2H] DTT, 100% D2O; 1 MM [U-  
REMARK 210                                   13C; U-15N] G34R, 1.2 MM RACK7     
REMARK 210                                   PHD, 100 MM SODIUM CHLORIDE,       
REMARK 210                                   0.02 % W/V SODIUM AZIDE, 50 MM     
REMARK 210                                   SODIUM PHOSPHATE, 2 MM [U-2H]      
REMARK 210                                   DTT, 90% H2O/10% D2O               
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D HNCO; 3D HNCACB; 3D             
REMARK 210                                   CBCA(CO)NH; 3D 1H-15N TOCSY; 3D    
REMARK 210                                   1H-15N NOESY; 3D HCCH-TOCSY; 3D    
REMARK 210                                   1H-13C NOESY ALIPHATIC; 3D 1H-     
REMARK 210                                   13C NOESY AROMATIC; 2D 1H-15N      
REMARK 210                                   HSQC; 2D 1H-13C HSQC; 2D FILTER    
REMARK 210                                   TOCSY; 2D FILTER NOESY; 3D 15N-    
REMARK 210                                   FILTER-EDIT NOESY; 3D 13C-FILTER-  
REMARK 210                                   EDIT NOESY                         
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : DD2                                
REMARK 210  SPECTROMETER MANUFACTURER      : AGILENT                            
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : X-PLOR NIH, SPARKY, NMRDRAW        
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    CYS B   111     H    HIS B   115              1.59            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 THR A  32     -176.37     49.72                                   
REMARK 500  1 HIS A  39       85.38     55.67                                   
REMARK 500  1 ARG B 106       79.54     29.68                                   
REMARK 500  1 PHE B 109      -94.13   -165.64                                   
REMARK 500  1 GLN B 119       70.53     52.07                                   
REMARK 500  1 PRO B 127      123.93    -17.73                                   
REMARK 500  1 PRO B 148      -31.45    -37.64                                   
REMARK 500  1 GLU B 157     -171.43     51.29                                   
REMARK 500  1 CYS B 158      101.19    -49.16                                   
REMARK 500  2 LYS A  37      -62.22   -153.38                                   
REMARK 500  2 HIS A  39      -37.98   -169.57                                   
REMARK 500  2 ARG B 106       80.78     28.64                                   
REMARK 500  2 PHE B 109      -79.03   -138.97                                   
REMARK 500  2 CYS B 123     -167.82   -104.36                                   
REMARK 500  2 PRO B 127      126.62    -15.52                                   
REMARK 500  2 GLU B 157     -158.68     51.54                                   
REMARK 500  2 GLU B 160       76.85   -171.70                                   
REMARK 500  3 THR A  32       -0.40   -145.35                                   
REMARK 500  3 ARG A  34      -85.63   -170.18                                   
REMARK 500  3 LYS A  36       37.90    -82.62                                   
REMARK 500  3 ARG B 106       79.44     29.84                                   
REMARK 500  3 PHE B 109     -113.84   -159.12                                   
REMARK 500  3 GLN B 119       73.98     55.48                                   
REMARK 500  3 PRO B 127      124.90    -16.63                                   
REMARK 500  3 ARG B 136       44.31     70.42                                   
REMARK 500  3 PRO B 148      -31.56    -37.67                                   
REMARK 500  4 ARG A  34      -70.71   -158.86                                   
REMARK 500  4 LYS A  37       54.06   -171.03                                   
REMARK 500  4 ARG B 106       81.30     29.87                                   
REMARK 500  4 PHE B 109     -113.76   -162.73                                   
REMARK 500  4 PRO B 127      128.26    -17.15                                   
REMARK 500  5 LYS A  37       54.13   -153.47                                   
REMARK 500  5 ARG B 106       84.78     29.27                                   
REMARK 500  5 PHE B 109      -91.83   -150.06                                   
REMARK 500  5 GLN B 119       90.01     47.48                                   
REMARK 500  5 LEU B 125       14.90   -143.90                                   
REMARK 500  5 PRO B 127      117.94    -16.22                                   
REMARK 500  5 PRO B 148      -29.58    -37.06                                   
REMARK 500  5 GLU B 157      155.59     57.87                                   
REMARK 500  6 LYS A  37      -61.93   -155.66                                   
REMARK 500  6 HIS A  39      -61.75   -170.96                                   
REMARK 500  6 ARG B 106       79.28     29.61                                   
REMARK 500  6 ASN B 107       63.37   -103.80                                   
REMARK 500  6 PHE B 109     -121.58   -171.21                                   
REMARK 500  6 PRO B 127      118.00    -17.25                                   
REMARK 500  6 PRO B 148      -30.79    -38.07                                   
REMARK 500  6 GLU B 157     -146.91     33.22                                   
REMARK 500  6 CYS B 158       95.76    -49.81                                   
REMARK 500  7 PHE B 109     -124.51   -171.02                                   
REMARK 500  7 GLN B 119       75.75     51.72                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     157 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  2 HIS B 131         0.11    SIDE CHAIN                              
REMARK 500  3 HIS B 131         0.09    SIDE CHAIN                              
REMARK 500  4 HIS B 131         0.10    SIDE CHAIN                              
REMARK 500  5 HIS B 131         0.09    SIDE CHAIN                              
REMARK 500  6 HIS B 131         0.10    SIDE CHAIN                              
REMARK 500  8 HIS B 131         0.09    SIDE CHAIN                              
REMARK 500  9 HIS B 131         0.10    SIDE CHAIN                              
REMARK 500 10 HIS B 131         0.10    SIDE CHAIN                              
REMARK 500 11 HIS B 131         0.09    SIDE CHAIN                              
REMARK 500 12 HIS B 131         0.09    SIDE CHAIN                              
REMARK 500 13 HIS B 131         0.10    SIDE CHAIN                              
REMARK 500 15 HIS B 131         0.09    SIDE CHAIN                              
REMARK 500 16 HIS B 131         0.09    SIDE CHAIN                              
REMARK 500 17 HIS B 131         0.09    SIDE CHAIN                              
REMARK 500 18 HIS B 131         0.10    SIDE CHAIN                              
REMARK 500 19 HIS B 131         0.10    SIDE CHAIN                              
REMARK 500 20 HIS B 131         0.10    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN B 201  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS B 111   SG                                                     
REMARK 620 2 CYS B 114   SG  113.2                                              
REMARK 620 3 HIS B 131   NE2 116.2 110.0                                        
REMARK 620 4 CYS B 134   SG  114.9  88.0 111.3                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN B 202  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS B 123   SG                                                     
REMARK 620 2 CYS B 126   SG  109.0                                              
REMARK 620 3 CYS B 147   SG  109.2 123.9                                        
REMARK 620 4 CYS B 150   SG  124.5 100.8  89.6                                  
REMARK 620 N                    1     2     3                                   
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 36376   RELATED DB: BMRB                                 
REMARK 900 STRUCTURAL BASIS OF RACK7 PHD TO READ A PEDIATRIC GLIOBLASTOMA-      
REMARK 900 ASSOCIATED HISTONE MUTATION H3.3G34R                                 
DBREF  7CWH A   31    41  UNP    P84243   H33_HUMAN       32     42             
DBREF  7CWH B  103   163  UNP    Q5TH12   Q5TH12_HUMAN    58    118             
SEQADV 7CWH ARG A   34  UNP  P84243    GLY    35 ENGINEERED MUTATION            
SEQRES   1 A   11  SER THR GLY ARG VAL LYS LYS PRO HIS ARG TYR                  
SEQRES   1 B   61  GLN ASP GLY ARG ASN ASP PHE TYR CYS TRP VAL CYS HIS          
SEQRES   2 B   61  ARG GLU GLY GLN VAL LEU CYS CYS GLU LEU CYS PRO ARG          
SEQRES   3 B   61  VAL TYR HIS ALA LYS CYS LEU ARG LEU THR SER GLU PRO          
SEQRES   4 B   61  GLU GLY ASP TRP PHE CYS PRO GLU CYS GLU LYS ILE THR          
SEQRES   5 B   61  VAL ALA GLU CYS ILE GLU THR GLN SER                          
HET     ZN  B 201       1                                                       
HET     ZN  B 202       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   3   ZN    2(ZN 2+)                                                     
HELIX    1 AA1 CYS B  147  GLU B  157  1                                  11    
SHEET    1 AA1 2 VAL B 120  LEU B 121  0                                        
SHEET    2 AA1 2 TYR B 130  HIS B 131 -1  O  TYR B 130   N  LEU B 121           
LINK         SG  CYS B 111                ZN    ZN B 201     1555   1555  2.30  
LINK         SG  CYS B 114                ZN    ZN B 201     1555   1555  2.30  
LINK         SG  CYS B 123                ZN    ZN B 202     1555   1555  2.31  
LINK         SG  CYS B 126                ZN    ZN B 202     1555   1555  2.31  
LINK         NE2 HIS B 131                ZN    ZN B 201     1555   1555  2.10  
LINK         SG  CYS B 134                ZN    ZN B 201     1555   1555  2.39  
LINK         SG  CYS B 147                ZN    ZN B 202     1555   1555  2.29  
LINK         SG  CYS B 150                ZN    ZN B 202     1555   1555  2.29  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1