HEADER TRANSFERASE 03-SEP-20 7CY7 TITLE CRYSTAL STRUCTURE OF CMD1 IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTODEXTRIN-BINDING PROTEIN,5-METHYLCYTOSINE-MODIFYING COMPND 3 ENZYME 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: 5MC-MODIFYING ENZYME 1,TEN-ELEVEN TRANSLOCATION 1 GENE COMPND 6 PROTEIN HOMOLOG,CRTET1; COMPND 7 EC: 1.14.99.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: THE FUSION PROTEIN OF MALTODEXTRIN-BINDING PROTEIN UNP COMPND 11 RESIDUES 27-392), LINKER, 5-METHYLCYTOSINE-MODIFYING ENZYME 1 (UNP COMPND 12 RESIDUES 1-532) AND TAGS; COMPND 13 MOL_ID: 2; COMPND 14 MOLECULE: DNA (5'-D(P*CP*GP*CP*GP*CP*GP*GP*GP*A)-3'); COMPND 15 CHAIN: C, D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 562, 3055; SOURCE 4 GENE: CMD1, CHLRE_12G553400V5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS TET, VITAMIN C, DIOXYGENASE, 5GMC, DNA MODIFICATION, 2-OXOGLUTARATE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.LI,T.ZHANG,M.SUN,J.DING REVDAT 4 29-NOV-23 7CY7 1 REMARK REVDAT 3 17-FEB-21 7CY7 1 JRNL REVDAT 2 10-FEB-21 7CY7 1 JRNL REVDAT 1 30-DEC-20 7CY7 0 JRNL AUTH W.LI,T.ZHANG,M.SUN,Y.SHI,X.J.ZHANG,G.L.XU,J.DING JRNL TITL MOLECULAR MECHANISM FOR VITAMIN C-DERIVED C 5 JRNL TITL 2 -GLYCERYL-METHYLCYTOSINE DNA MODIFICATION CATALYZED BY ALGAL JRNL TITL 3 TET HOMOLOGUE CMD1. JRNL REF NAT COMMUN V. 12 744 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33531488 JRNL DOI 10.1038/S41467-021-21061-2 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 57529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3035 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2825 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6624 REMARK 3 NUCLEIC ACID ATOMS : 327 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.87000 REMARK 3 B22 (A**2) : -3.82000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.678 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7185 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6697 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9815 ; 1.118 ; 1.908 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15407 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 876 ; 5.596 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 289 ;34.815 ;24.533 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1090 ;14.943 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;19.479 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1076 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8022 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1628 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 13881 ; 3.986 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 124 ;26.609 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 13981 ;20.093 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -371 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 467.4658 17.6997 147.9492 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.1383 REMARK 3 T33: 0.0880 T12: 0.0036 REMARK 3 T13: 0.0189 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0451 L22: 0.0023 REMARK 3 L33: 0.0483 L12: -0.0063 REMARK 3 L13: 0.0385 L23: -0.0022 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: -0.0022 S13: -0.0013 REMARK 3 S21: 0.0025 S22: -0.0028 S23: -0.0009 REMARK 3 S31: -0.0048 S32: -0.0072 S33: -0.0019 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 11 REMARK 3 ORIGIN FOR THE GROUP (A): 478.3574 38.4310 146.9184 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.0989 REMARK 3 T33: 0.0921 T12: 0.0427 REMARK 3 T13: 0.0323 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.8295 L22: 7.3370 REMARK 3 L33: 0.5177 L12: -2.4629 REMARK 3 L13: -0.6416 L23: 1.9250 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: 0.0259 S13: -0.1199 REMARK 3 S21: -0.1577 S22: -0.0994 S23: 0.3662 REMARK 3 S31: -0.0839 S32: -0.0405 S33: 0.0734 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 7 REMARK 3 ORIGIN FOR THE GROUP (A): 480.2759 34.4643 149.2030 REMARK 3 T TENSOR REMARK 3 T11: 0.0946 T22: 0.1578 REMARK 3 T33: 0.1170 T12: 0.0234 REMARK 3 T13: -0.0309 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.6365 L22: 1.5262 REMARK 3 L33: 0.0044 L12: -0.9852 REMARK 3 L13: 0.0107 L23: -0.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: -0.0329 S13: 0.0534 REMARK 3 S21: 0.0640 S22: 0.0390 S23: -0.0896 REMARK 3 S31: -0.0199 S32: -0.0022 S33: 0.0026 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7CY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018435. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60566 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7CY4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (V/V) 2-PROPANOL, 0.1 M SODIUM REMARK 280 CITRATE, PH 5.0, AND 10% (W/V) PEG 10000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.80650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.88200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.80650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 62.88200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -373 REMARK 465 LYS A -372 REMARK 465 GLY A 177 REMARK 465 GLU A 178 REMARK 465 VAL A 179 REMARK 465 GLU A 180 REMARK 465 GLY A 181 REMARK 465 GLY A 182 REMARK 465 GLU A 183 REMARK 465 PRO A 508 REMARK 465 ALA A 509 REMARK 465 LEU A 510 REMARK 465 ALA A 511 REMARK 465 VAL A 512 REMARK 465 ARG A 513 REMARK 465 ALA A 514 REMARK 465 ASN A 515 REMARK 465 ALA A 516 REMARK 465 VAL A 517 REMARK 465 ALA A 518 REMARK 465 GLY A 519 REMARK 465 LYS A 520 REMARK 465 LYS A 521 REMARK 465 ARG A 522 REMARK 465 ALA A 523 REMARK 465 ALA A 524 REMARK 465 ALA A 525 REMARK 465 ASP A 526 REMARK 465 VAL A 527 REMARK 465 ASP A 528 REMARK 465 PHE A 529 REMARK 465 CYS A 530 REMARK 465 GLY A 531 REMARK 465 ALA A 532 REMARK 465 ALA A 533 REMARK 465 ALA A 534 REMARK 465 ALA A 535 REMARK 465 LEU A 536 REMARK 465 GLU A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 465 DC C 1 REMARK 465 DC C 2 REMARK 465 DT C 12 REMARK 465 DG C 13 REMARK 465 DT C 14 REMARK 465 DG D 8 REMARK 465 DG D 9 REMARK 465 DG D 10 REMARK 465 DA D 11 REMARK 465 DT D 12 REMARK 465 DG D 13 REMARK 465 DT D 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A-371 CG1 CG2 CD1 REMARK 470 GLU A-370 CG CD OE1 OE2 REMARK 470 LYS A-331 CG CD CE NZ REMARK 470 LEU A -98 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A-265 -56.08 -127.03 REMARK 500 LEU A-251 81.38 -157.45 REMARK 500 ALA A-205 -75.31 -82.64 REMARK 500 ASP A-164 -169.74 -123.26 REMARK 500 LYS A-117 78.76 -119.04 REMARK 500 TYR A -90 -51.35 -124.56 REMARK 500 ASN A -41 44.25 -103.21 REMARK 500 VAL A 82 -78.34 -103.43 REMARK 500 ILE A 266 19.64 -145.01 REMARK 500 HIS A 362 163.93 74.71 REMARK 500 LEU A 373 79.29 -116.10 REMARK 500 LEU A 383 -132.57 -109.21 REMARK 500 PHE A 385 74.48 -162.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 610 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 345 NE2 REMARK 620 2 ASP A 347 OD2 96.6 REMARK 620 3 HIS A 397 NE2 88.5 83.9 REMARK 620 4 HOH A1057 O 102.1 159.9 104.0 REMARK 620 N 1 2 3 DBREF1 7CY7 A -372 -7 UNP A0A376KDN7_ECOLX DBREF2 7CY7 A A0A376KDN7 27 392 DBREF1 7CY7 A 1 532 UNP CMD1_CHLRE DBREF2 7CY7 A A0A2K3D5Z7 1 532 DBREF 7CY7 C 1 14 PDB 7CY7 7CY7 1 14 DBREF 7CY7 D 1 14 PDB 7CY7 7CY7 1 14 SEQADV 7CY7 MET A -373 UNP A0A376KDN INITIATING METHIONINE SEQADV 7CY7 ALA A -291 UNP A0A376KDN ASP 108 ENGINEERED MUTATION SEQADV 7CY7 ALA A -290 UNP A0A376KDN LYS 109 ENGINEERED MUTATION SEQADV 7CY7 ALA A -201 UNP A0A376KDN GLU 198 ENGINEERED MUTATION SEQADV 7CY7 ALA A -200 UNP A0A376KDN ASN 199 ENGINEERED MUTATION SEQADV 7CY7 ALA A -134 UNP A0A376KDN LYS 265 ENGINEERED MUTATION SEQADV 7CY7 ALA A -11 UNP A0A376KDN LYS 388 ENGINEERED MUTATION SEQADV 7CY7 ALA A -10 UNP A0A376KDN ASP 389 ENGINEERED MUTATION SEQADV 7CY7 ASN A -6 UNP A0A376KDN LINKER SEQADV 7CY7 ALA A -5 UNP A0A376KDN LINKER SEQADV 7CY7 ALA A -4 UNP A0A376KDN LINKER SEQADV 7CY7 ARG A -3 UNP A0A376KDN LINKER SEQADV 7CY7 ALA A -2 UNP A0A376KDN LINKER SEQADV 7CY7 ALA A -1 UNP A0A376KDN LINKER SEQADV 7CY7 ALA A 0 UNP A0A376KDN LINKER SEQADV 7CY7 ALA A 533 UNP A0A2K3D5Z EXPRESSION TAG SEQADV 7CY7 ALA A 534 UNP A0A2K3D5Z EXPRESSION TAG SEQADV 7CY7 ALA A 535 UNP A0A2K3D5Z EXPRESSION TAG SEQADV 7CY7 LEU A 536 UNP A0A2K3D5Z EXPRESSION TAG SEQADV 7CY7 GLU A 537 UNP A0A2K3D5Z EXPRESSION TAG SEQADV 7CY7 HIS A 538 UNP A0A2K3D5Z EXPRESSION TAG SEQADV 7CY7 HIS A 539 UNP A0A2K3D5Z EXPRESSION TAG SEQADV 7CY7 HIS A 540 UNP A0A2K3D5Z EXPRESSION TAG SEQADV 7CY7 HIS A 541 UNP A0A2K3D5Z EXPRESSION TAG SEQADV 7CY7 HIS A 542 UNP A0A2K3D5Z EXPRESSION TAG SEQADV 7CY7 HIS A 543 UNP A0A2K3D5Z EXPRESSION TAG SEQRES 1 A 917 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 917 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 917 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 917 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 917 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 917 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 917 GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 917 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 917 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 917 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 917 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 917 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 917 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 917 PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 917 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 917 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 917 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 917 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 917 ASN ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 917 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 917 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 917 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 917 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 917 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 917 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 917 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 917 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 917 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 A 917 ALA GLN THR ASN ALA ALA ARG ALA ALA ALA MET SER VAL SEQRES 30 A 917 ALA LEU ALA SER GLU TYR GLN LEU VAL GLN ASN ALA GLN SEQRES 31 A 917 LEU PRO GLN ARG TRP SER GLN SER ALA ARG LYS SER LEU SEQRES 32 A 917 ALA ILE LEU GLU ALA THR ALA ARG LYS GLU ALA THR ALA SEQRES 33 A 917 GLN MET GLU ALA ALA GLY GLY SER PHE CYS GLY GLN PHE SEQRES 34 A 917 PRO VAL ASP PRO ALA PHE LYS VAL LEU SER LEU GLU TYR SEQRES 35 A 917 SER ALA PRO ASN PRO ASP ILE ALA ARG ALA ILE ARG ARG SEQRES 36 A 917 VAL ASP SER VAL PRO ASN PRO PRO LEU PRO SER HIS VAL SEQRES 37 A 917 VAL ALA ILE GLN SER THR ALA VAL ASP ALA ASP LEU SER SEQRES 38 A 917 LEU ALA MET GLY VAL SER LEU THR PRO GLY ARG HIS THR SEQRES 39 A 917 SER TYR LEU VAL ASP ALA ARG ALA LEU GLN GLN SER ASN SEQRES 40 A 917 SER ALA ALA VAL ALA ALA ARG LYS ALA ASP GLY ASP LYS SEQRES 41 A 917 TRP GLY PRO ALA CYS ASP GLU MET PHE ARG GLY CYS ARG SEQRES 42 A 917 CYS VAL THR GLY GLN GLU VAL VAL PHE TYR THR ALA VAL SEQRES 43 A 917 LYS GLU PRO ALA GLY GLU VAL GLU GLY GLY GLU GLY SER SEQRES 44 A 917 LEU PHE LYS PRO SER PHE ASP GLY PRO ALA PHE ARG PRO SEQRES 45 A 917 SER TRP GLY GLU LEU SER GLY LYS ALA THR GLY VAL VAL SEQRES 46 A 917 ALA CYS VAL LEU GLN VAL PRO ILE GLY LYS GLU THR ASP SEQRES 47 A 917 ILE ILE CYS ALA GLU TYR ASP ASN LEU VAL SER LYS GLY SEQRES 48 A 917 GLN PHE ALA THR VAL ASP ARG PHE GLY GLY ASP HIS THR SEQRES 49 A 917 VAL ASN MET THR GLY ASN ALA LEU ILE GLN ASN ASP GLY SEQRES 50 A 917 LYS ALA ILE SER LYS GLY TYR ALA VAL ALA HIS ARG ALA SEQRES 51 A 917 ARG VAL THR SER ASN VAL TYR GLY LYS ALA ASN ASP VAL SEQRES 52 A 917 SER LEU GLN ARG LEU ALA GLU THR VAL TRP SER VAL VAL SEQRES 53 A 917 GLU LYS ARG LEU SER PHE MET PRO ALA TYR ARG ASP LEU SEQRES 54 A 917 VAL ILE THR GLU GLN GLY LYS PRO PHE MET LEU GLY ALA SEQRES 55 A 917 THR ALA THR ASN ILE ILE SER LEU THR GLU ASN GLN GLY SEQRES 56 A 917 VAL MET LEU HIS LEU ASP THR ASP ASP GLY VAL TRP THR SEQRES 57 A 917 ILE ILE LEU TRP PHE HIS ARG HIS SER GLY ILE ILE ALA SEQRES 58 A 917 GLY GLY GLU PHE VAL LEU PRO SER LEU GLY ILE SER PHE SEQRES 59 A 917 GLN PRO LEU ASP PHE THR ILE VAL VAL PHE ALA ALA ASN SEQRES 60 A 917 THR ILE VAL HIS GLY THR ARG PRO LEU GLN THR THR GLY SEQRES 61 A 917 LYS ILE ILE ARG TRP GLY SER SER HIS PHE LEU ARG PHE SEQRES 62 A 917 LYS ASP VAL ASN ALA LEU ALA GLN LEU GLY ALA ALA TYR SEQRES 63 A 917 GLY VAL ASP GLU LEU ASP ALA LYS GLN ARG ASP GLN LEU SEQRES 64 A 917 GLU GLU VAL ASP ALA ALA ASN SER LYS ASP GLY VAL GLY SEQRES 65 A 917 ALA ALA ARG ARG VAL ALA SER CYS MET ALA ALA GLU ARG SEQRES 66 A 917 LYS ALA ALA ILE GLU ALA GLN LYS ALA ALA CYS VAL ARG SEQRES 67 A 917 GLY VAL VAL MET ASN PRO CYS THR GLY ARG MET PRO SER SEQRES 68 A 917 LEU LEU PHE TRP GLN VAL TRP ARG LYS PRO PRO ALA LEU SEQRES 69 A 917 ALA VAL ARG ALA ASN ALA VAL ALA GLY LYS LYS ARG ALA SEQRES 70 A 917 ALA ALA ASP VAL ASP PHE CYS GLY ALA ALA ALA ALA LEU SEQRES 71 A 917 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 14 DC DC DC DG DC DG DC DG DG DG DA DT DG SEQRES 2 C 14 DT SEQRES 1 D 14 DC DC DC DG DC DG DC DG DG DG DA DT DG SEQRES 2 D 14 DT HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET IPA A 609 4 HET FE2 A 610 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM IPA ISOPROPYL ALCOHOL HETNAM FE2 FE (II) ION HETSYN EDO ETHYLENE GLYCOL HETSYN IPA 2-PROPANOL FORMUL 4 EDO 8(C2 H6 O2) FORMUL 12 IPA C3 H8 O FORMUL 13 FE2 FE 2+ FORMUL 14 HOH *402(H2 O) HELIX 1 AA1 GLY A -357 GLY A -341 1 17 HELIX 2 AA2 LYS A -331 ALA A -321 1 11 HELIX 3 AA3 HIS A -309 SER A -300 1 10 HELIX 4 AA4 ALA A -291 ASP A -286 1 6 HELIX 5 AA5 TYR A -283 ALA A -277 1 7 HELIX 6 AA6 THR A -245 GLU A -243 5 3 HELIX 7 AA7 GLU A -242 LYS A -231 1 12 HELIX 8 AA8 GLU A -220 ASP A -209 1 12 HELIX 9 AA9 ASN A -188 ASN A -172 1 17 HELIX 10 AB1 ASP A -164 LYS A -154 1 11 HELIX 11 AB2 GLY A -145 TRP A -143 5 3 HELIX 12 AB3 ALA A -142 THR A -136 1 7 HELIX 13 AB4 ASN A -101 TYR A -90 1 12 HELIX 14 AB5 THR A -87 LYS A -76 1 12 HELIX 15 AB6 LEU A -69 ALA A -61 1 9 HELIX 16 AB7 ASP A -59 LYS A -47 1 13 HELIX 17 AB8 GLN A -38 SER A -21 1 18 HELIX 18 AB9 THR A -17 ASN A 14 1 32 HELIX 19 AC1 SER A 22 GLY A 48 1 27 HELIX 20 AC2 SER A 99 GLY A 111 1 13 HELIX 21 AC3 ALA A 126 ASP A 143 1 18 HELIX 22 AC4 GLY A 148 GLY A 157 1 10 HELIX 23 AC5 TRP A 200 SER A 204 5 5 HELIX 24 AC6 GLY A 220 LYS A 236 1 17 HELIX 25 AC7 TYR A 270 SER A 280 1 11 HELIX 26 AC8 LYS A 285 LEU A 306 1 22 HELIX 27 AC9 SER A 307 ILE A 317 1 11 HELIX 28 AD1 GLY A 321 MET A 325 5 5 HELIX 29 AD2 ARG A 418 GLY A 433 1 16 HELIX 30 AD3 ASP A 435 GLY A 456 1 22 HELIX 31 AD4 GLY A 456 ALA A 481 1 26 SHEET 1 AA1 6 VAL A-338 GLU A-335 0 SHEET 2 AA1 6 LEU A-366 TRP A-363 1 N ILE A-364 O GLU A-335 SHEET 3 AA1 6 ILE A-314 ALA A-310 1 O ILE A-314 N TRP A-363 SHEET 4 AA1 6 PHE A-115 ILE A-107 -1 O GLY A-108 N ILE A-313 SHEET 5 AA1 6 TYR A-267 GLU A-262 -1 N TYR A-267 O ALA A-109 SHEET 6 AA1 6 ALA A -72 VAL A -71 -1 O ALA A -72 N VAL A-263 SHEET 1 AA2 5 VAL A-338 GLU A-335 0 SHEET 2 AA2 5 LEU A-366 TRP A-363 1 N ILE A-364 O GLU A-335 SHEET 3 AA2 5 ILE A-314 ALA A-310 1 O ILE A-314 N TRP A-363 SHEET 4 AA2 5 PHE A-115 ILE A-107 -1 O GLY A-108 N ILE A-313 SHEET 5 AA2 5 GLU A -45 ILE A -44 1 O GLU A -45 N VAL A-114 SHEET 1 AA3 2 ARG A-275 TYR A-274 0 SHEET 2 AA3 2 LYS A-271 LEU A-270 -1 O LYS A-271 N TYR A-274 SHEET 1 AA4 4 SER A-228 LEU A-226 0 SHEET 2 AA4 4 THR A-151 ASN A-146 1 O ALA A-150 N SER A-228 SHEET 3 AA4 4 SER A-259 ASN A-255 -1 N ASN A-255 O ALA A-150 SHEET 4 AA4 4 TYR A-131 THR A-128 -1 O THR A-128 N LEU A-258 SHEET 1 AA5 2 TYR A-206 ALA A-201 0 SHEET 2 AA5 2 LYS A-198 GLY A-191 -1 O ASP A-196 N LYS A-203 SHEET 1 AA6 2 THR A-124 PHE A-123 0 SHEET 2 AA6 2 GLN A-120 PRO A-119 -1 O GLN A-120 N PHE A-123 SHEET 1 AA7 2 SER A 50 CYS A 52 0 SHEET 2 AA7 2 PHE A 55 VAL A 57 -1 O VAL A 57 N SER A 50 SHEET 1 AA8 2 PHE A 61 VAL A 63 0 SHEET 2 AA8 2 SER A 84 PRO A 86 -1 O VAL A 85 N LYS A 62 SHEET 1 AA9 4 ARG A 77 ARG A 81 0 SHEET 2 AA9 4 SER A 65 SER A 69 -1 N SER A 69 O ARG A 77 SHEET 3 AA9 4 GLY A 364 GLY A 368 -1 O GLY A 364 N TYR A 68 SHEET 4 AA9 4 LEU A 402 THR A 405 -1 O GLN A 403 N ALA A 367 SHEET 1 AB1 6 VAL A 94 ALA A 96 0 SHEET 2 AB1 6 THR A 120 ASP A 125 -1 O LEU A 123 N VAL A 95 SHEET 3 AB1 6 VAL A 166 LYS A 173 1 O TYR A 169 N TYR A 122 SHEET 4 AB1 6 LYS A 206 GLN A 216 -1 O ALA A 212 N PHE A 168 SHEET 5 AB1 6 GLN A 502 TRP A 504 -1 O TRP A 504 N LYS A 206 SHEET 6 AB1 6 ALA A 195 PHE A 196 1 N PHE A 196 O VAL A 503 SHEET 1 AB210 VAL A 94 ALA A 96 0 SHEET 2 AB210 THR A 120 ASP A 125 -1 O LEU A 123 N VAL A 95 SHEET 3 AB210 VAL A 166 LYS A 173 1 O TYR A 169 N TYR A 122 SHEET 4 AB210 LYS A 206 GLN A 216 -1 O ALA A 212 N PHE A 168 SHEET 5 AB210 THR A 386 PHE A 390 -1 O ILE A 387 N LEU A 215 SHEET 6 AB210 THR A 354 ARG A 361 -1 N ILE A 356 O VAL A 388 SHEET 7 AB210 ILE A 409 PHE A 416 -1 O HIS A 415 N ILE A 355 SHEET 8 AB210 ILE A 333 GLU A 338 -1 N THR A 337 O GLY A 412 SHEET 9 AB210 HIS A 249 GLY A 255 -1 N ASN A 252 O LEU A 336 SHEET 10 AB210 ALA A 240 ARG A 244 -1 N VAL A 242 O VAL A 251 SHEET 1 AB3 5 ARG A 159 CYS A 160 0 SHEET 2 AB3 5 ILE A 378 PHE A 380 1 O SER A 379 N ARG A 159 SHEET 3 AB3 5 PHE A 371 LEU A 373 -1 N LEU A 373 O ILE A 378 SHEET 4 AB3 5 HIS A 397 THR A 399 -1 O GLY A 398 N VAL A 372 SHEET 5 AB3 5 VAL A 342 HIS A 345 -1 N VAL A 342 O THR A 399 LINK NE2 HIS A 345 FE FE2 A 610 1555 1555 2.57 LINK OD2 ASP A 347 FE FE2 A 610 1555 1555 2.20 LINK NE2 HIS A 397 FE FE2 A 610 1555 1555 2.29 LINK FE FE2 A 610 O HOH A1057 1555 1555 2.35 CRYST1 153.613 125.764 64.034 90.00 102.82 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006510 0.000000 0.001482 0.00000 SCALE2 0.000000 0.007951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016016 0.00000