HEADER VIRAL PROTEIN 04-SEP-20 7CYV TITLE CRYSTAL STRUCTURE OF FD20, A NEUTRALIZING SINGLE-CHAIN VARIABLE TITLE 2 FRAGMENT (SCFV) IN COMPLEX WITH SARS-COV-2 SPIKE RECEPTOR-BINDING TITLE 3 DOMAIN (RBD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THE HEAVY CHAIN VARIABLE REGION OF THE SCFV FD20,THE LIGHT COMPND 3 CHAIN VARIABLE REGION OF THE SCFV FD20; COMPND 4 CHAIN: H; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE FUSION PROTEIN OF TAG (GSSS), HEAVY CHAIN VARIABLE COMPND 7 REGION OF THE SCFV FD20 (RESIDUES 0-125), LINKER (GGGSGGGGSGGGGSS), COMPND 8 LIGHT CHAIN VARIABLE REGION OF THE SCFV FD20 (RESIDUES 1002-1129), COMPND 9 AND TAG (HHHHHH); COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SPIKE PROTEIN S1; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: RECEPTOR-BINDING DOMAIN (RBD); COMPND 14 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 8 2; SOURCE 9 ORGANISM_COMMON: 2019-NCOV; SOURCE 10 ORGANISM_TAXID: 2697049; SOURCE 11 GENE: S, 2; SOURCE 12 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE KEYWDS CORONAVIRUS, COVID-19, NCOV-2019, NEUTRALIZING ANTIBODY, RECEPTOR- KEYWDS 2 BINDING DOMAIN, SARS-COV-2, SCFV, SINGLE-CHAIN VARIABLE FRAGMENT, KEYWDS 3 SPIKE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,T.LI,Y.LAI,H.CAI,H.YAO,D.LI REVDAT 3 29-NOV-23 7CYV 1 REMARK REVDAT 2 30-MAR-22 7CYV 1 JRNL REVDAT 1 15-SEP-21 7CYV 0 JRNL AUTH T.LI,H.CAI,Y.ZHAO,Y.LI,Y.LAI,H.YAO,L.D.LIU,Z.SUN, JRNL AUTH 2 M.F.VAN VLISSINGEN,T.KUIKEN,C.H.GEURTSVANKESSEL,N.ZHANG, JRNL AUTH 3 B.ZHOU,L.LU,Y.GONG,W.QIN,M.MONDAL,B.DUAN,S.XU,A.S.RICHARD, JRNL AUTH 4 H.RAOUL,J.CHEN,C.XU,L.WU,H.ZHOU,Z.HUANG,X.ZHANG,J.LI,Y.WANG, JRNL AUTH 5 Y.BI,B.ROCKX,J.CHEN,F.L.MENG,D.LAVILLETTE,D.LI JRNL TITL UNCOVERING A CONSERVED VULNERABILITY SITE IN SARS-COV-2 BY A JRNL TITL 2 HUMAN ANTIBODY. JRNL REF EMBO MOL MED V. 13 14544 2021 JRNL REFN ESSN 1757-4684 JRNL PMID 34672091 JRNL DOI 10.15252/EMMM.202114544 REMARK 2 REMARK 2 RESOLUTION. 3.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 9764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4300 - 4.5200 0.99 3182 150 0.2172 0.2259 REMARK 3 2 4.5100 - 3.5800 0.99 3066 173 0.2491 0.2789 REMARK 3 3 3.2400 - 3.1300 0.98 3055 138 0.3390 0.3895 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.523 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3306 REMARK 3 ANGLE : 0.794 4524 REMARK 3 CHIRALITY : 0.053 517 REMARK 3 PLANARITY : 0.004 578 REMARK 3 DIHEDRAL : 17.780 515 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CYV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300017695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9847 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.130 REMARK 200 RESOLUTION RANGE LOW (A) : 46.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.27240 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 1.12500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6MOJ, 5C6W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE MONOHYDRATE, 0.1 REMARK 280 M BIS-TRIS PH 5.5, 25% W/V POLYETHYLENE GLYCOL 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 103.47900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.96250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 103.47900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.96250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H -4 REMARK 465 SER H -3 REMARK 465 SER H -2 REMARK 465 SER H -1 REMARK 465 GLN H 0 REMARK 465 GLY H 987 REMARK 465 GLY H 988 REMARK 465 GLY H 989 REMARK 465 SER H 990 REMARK 465 GLY H 991 REMARK 465 GLY H 992 REMARK 465 GLY H 993 REMARK 465 GLY H 994 REMARK 465 SER H 995 REMARK 465 GLY H 996 REMARK 465 GLY H 997 REMARK 465 GLY H 998 REMARK 465 GLY H 999 REMARK 465 SER H 1000 REMARK 465 ALA H 1110 REMARK 465 GLY H 1111 REMARK 465 ARG H 1112 REMARK 465 ALA H 1113 REMARK 465 GLY H 1114 REMARK 465 GLU H 1115 REMARK 465 GLN H 1116 REMARK 465 LYS H 1117 REMARK 465 LEU H 1118 REMARK 465 ILE H 1119 REMARK 465 SER H 1120 REMARK 465 GLU H 1121 REMARK 465 GLU H 1122 REMARK 465 ASP H 1123 REMARK 465 LEU H 1124 REMARK 465 ASN H 1125 REMARK 465 SER H 1126 REMARK 465 ALA H 1127 REMARK 465 VAL H 1128 REMARK 465 ASP H 1129 REMARK 465 HIS H 1130 REMARK 465 HIS H 1131 REMARK 465 HIS H 1132 REMARK 465 HIS H 1133 REMARK 465 HIS H 1134 REMARK 465 HIS H 1135 REMARK 465 ALA B 327 REMARK 465 GLY B 328 REMARK 465 SER B 329 REMARK 465 PRO B 330 REMARK 465 ASN B 331 REMARK 465 ILE B 332 REMARK 465 THR B 333 REMARK 465 PRO B 527 REMARK 465 LYS B 528 REMARK 465 LYS B 529 REMARK 465 SER B 530 REMARK 465 THR B 531 REMARK 465 GLY B 532 REMARK 465 THR B 533 REMARK 465 LEU B 534 REMARK 465 GLU B 535 REMARK 465 VAL B 536 REMARK 465 LEU B 537 REMARK 465 PHE B 538 REMARK 465 GLN B 539 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 LYS H 12 CG CD CE NZ REMARK 470 LYS H 13 CG CD CE NZ REMARK 470 SER H 16 OG REMARK 470 SER H 17 OG REMARK 470 SER H 30 OG REMARK 470 GLN H 62 CG CD OE1 NE2 REMARK 470 LYS H 63 CG CD CE NZ REMARK 470 ASP H 73 CG OD1 OD2 REMARK 470 SER H 84 OG REMARK 470 SER H 85 OG REMARK 470 ARG H 87 CG CD NE CZ NH1 NH2 REMARK 470 ASP H 115 CG OD1 OD2 REMARK 470 GLN H 119 CG CD OE1 NE2 REMARK 470 GLN H1016 CG CD OE1 NE2 REMARK 470 ARG H1019 CG CD NE CZ NH1 NH2 REMARK 470 ASP H1025 CG OD1 OD2 REMARK 470 SER H1051 OG REMARK 470 GLU H1052 CG CD OE1 OE2 REMARK 470 SER H1055 OG REMARK 470 ILE H1057 CG1 CG2 CD1 REMARK 470 SER H1065 OG REMARK 470 SER H1066 OG REMARK 470 GLU H1082 CG CD OE1 OE2 REMARK 470 GLN H1088 CG CD OE1 NE2 REMARK 470 SER H1089 OG REMARK 470 SER H1092 OG REMARK 470 SER H1093 OG REMARK 470 LYS H1104 CG CD CE NZ REMARK 470 LEU H1108 CG CD1 CD2 REMARK 470 ASN B 334 CG OD1 ND2 REMARK 470 GLU B 340 CG CD OE1 OE2 REMARK 470 LYS B 356 CG CD CE NZ REMARK 470 LEU B 368 CG CD1 CD2 REMARK 470 TYR B 369 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 370 CG OD1 ND2 REMARK 470 SER B 371 OG REMARK 470 SER B 373 OG REMARK 470 SER B 375 OG REMARK 470 LYS B 378 CG CD CE NZ REMARK 470 LYS B 386 CG CD CE NZ REMARK 470 ASN B 388 CG OD1 ND2 REMARK 470 ASP B 389 CG OD1 OD2 REMARK 470 SER B 438 OG REMARK 470 GLU B 471 CG CD OE1 OE2 REMARK 470 GLN B 474 CG CD OE1 NE2 REMARK 470 SER B 477 OG REMARK 470 THR B 478 OG1 CG2 REMARK 470 VAL B 483 CG1 CG2 REMARK 470 PHE B 486 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 517 CG CD1 CD2 REMARK 470 LEU B 518 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 107 63.91 -67.32 REMARK 500 TYR H 112 -145.97 61.63 REMARK 500 ASP H1050 -48.10 70.24 REMARK 500 SER H1051 66.57 -161.02 REMARK 500 THR H1068 31.82 -96.41 REMARK 500 ASP H1081 59.48 -91.95 REMARK 500 ALA B 352 36.53 -98.24 REMARK 500 ASN B 370 65.96 -101.68 REMARK 500 ASN B 422 -60.95 -132.77 REMARK 500 ASP B 428 35.63 -87.88 REMARK 500 CYS B 525 -179.84 -170.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 7CYV H -4 127 PDB 7CYV 7CYV -4 127 DBREF 7CYV H 987 1135 PDB 7CYV 7CYV 987 1135 DBREF 7CYV B 330 531 UNP P0DTC2 SPIKE_SARS2 330 531 SEQADV 7CYV ALA B 327 UNP P0DTC2 EXPRESSION TAG SEQADV 7CYV GLY B 328 UNP P0DTC2 EXPRESSION TAG SEQADV 7CYV SER B 329 UNP P0DTC2 EXPRESSION TAG SEQADV 7CYV GLY B 532 UNP P0DTC2 EXPRESSION TAG SEQADV 7CYV THR B 533 UNP P0DTC2 EXPRESSION TAG SEQADV 7CYV LEU B 534 UNP P0DTC2 EXPRESSION TAG SEQADV 7CYV GLU B 535 UNP P0DTC2 EXPRESSION TAG SEQADV 7CYV VAL B 536 UNP P0DTC2 EXPRESSION TAG SEQADV 7CYV LEU B 537 UNP P0DTC2 EXPRESSION TAG SEQADV 7CYV PHE B 538 UNP P0DTC2 EXPRESSION TAG SEQADV 7CYV GLN B 539 UNP P0DTC2 EXPRESSION TAG SEQRES 1 H 281 GLY SER SER SER GLN GLN VAL GLN LEU GLN GLN SER GLY SEQRES 2 H 281 ALA GLU VAL LYS LYS PRO GLY SER SER VAL LYS VAL SER SEQRES 3 H 281 CYS LYS ALA SER GLY GLY THR PHE SER SER TYR ALA PHE SEQRES 4 H 281 SER TRP VAL ARG GLN ALA PRO GLY GLN GLY LEU GLU TRP SEQRES 5 H 281 MET GLY ARG ILE ILE PRO ILE LEU GLY ILE ALA ASN TYR SEQRES 6 H 281 ALA GLN LYS PHE GLN GLY ARG VAL THR ILE THR ALA ASP SEQRES 7 H 281 ILE SER THR SER THR ALA TYR MET ALA LEU SER SER LEU SEQRES 8 H 281 ARG SER GLU ASP THR ALA VAL TYR TYR CYS ALA LYS VAL SEQRES 9 H 281 GLU VAL ASN ILE GLY MET ASP ASP TYR TYR TYR TYR TYR SEQRES 10 H 281 GLY MET ASP VAL TRP GLY GLN GLY THR THR VAL THR VAL SEQRES 11 H 281 SER SER GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY SEQRES 12 H 281 GLY GLY SER SER TYR VAL LEU THR GLN PRO PRO SER VAL SEQRES 13 H 281 SER VAL SER PRO GLY GLN THR ALA ARG ILE THR CYS SER SEQRES 14 H 281 GLY ASP ALA LEU PRO LYS GLN TYR ALA TYR TRP TYR GLN SEQRES 15 H 281 GLN LYS PRO GLY GLN ALA PRO VAL LEU VAL ILE TYR LYS SEQRES 16 H 281 ASP SER GLU ARG PRO SER GLY ILE PRO GLU ARG PHE SER SEQRES 17 H 281 GLY SER SER SER GLY THR THR VAL THR LEU THR ILE SER SEQRES 18 H 281 GLY VAL GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLN SEQRES 19 H 281 SER ALA ASP SER SER GLY THR TYR VAL VAL PHE GLY GLY SEQRES 20 H 281 GLY THR LYS LEU THR VAL LEU SER ALA GLY ARG ALA GLY SEQRES 21 H 281 GLU GLN LYS LEU ILE SER GLU GLU ASP LEU ASN SER ALA SEQRES 22 H 281 VAL ASP HIS HIS HIS HIS HIS HIS SEQRES 1 B 213 ALA GLY SER PRO ASN ILE THR ASN LEU CYS PRO PHE GLY SEQRES 2 B 213 GLU VAL PHE ASN ALA TPO ARG PHE ALA SER VAL TYR ALA SEQRES 3 B 213 TRP ASN ARG LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SEQRES 4 B 213 SER VAL LEU TYR ASN SER ALA SER PHE SER THR PHE LYS SEQRES 5 B 213 CYS TYR GLY VAL SER PRO THR LYS LEU ASN ASP LEU CYS SEQRES 6 B 213 PHE THR ASN VAL TYR ALA ASP SER PHE VAL ILE ARG GLY SEQRES 7 B 213 ASP GLU VAL ARG GLN ILE ALA PRO GLY GLN THR GLY LYS SEQRES 8 B 213 ILE ALA ASP TYR ASN TYR LYS LEU PRO ASP ASP PHE THR SEQRES 9 B 213 GLY CYS VAL ILE ALA TRP ASN SER ASN ASN LEU ASP SER SEQRES 10 B 213 LYS VAL GLY GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE SEQRES 11 B 213 ARG LYS SER ASN LEU LYS PRO PHE GLU ARG ASP ILE SER SEQRES 12 B 213 THR GLU ILE TYR GLN ALA GLY SER THR PRO CYS ASN GLY SEQRES 13 B 213 VAL GLU GLY PHE ASN CYS TYR PHE PRO LEU GLN SER TYR SEQRES 14 B 213 GLY PHE GLN PRO THR ASN GLY VAL GLY TYR GLN PRO TYR SEQRES 15 B 213 ARG VAL VAL VAL LEU SER PHE GLU LEU LEU HIS ALA PRO SEQRES 16 B 213 ALA THR VAL CYS GLY PRO LYS LYS SER THR GLY THR LEU SEQRES 17 B 213 GLU VAL LEU PHE GLN MODRES 7CYV TPO B 345 THR MODIFIED RESIDUE HET TPO B 345 11 HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET FUC A 4 10 HET FUC A 5 10 HETNAM TPO PHOSPHOTHREONINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN TPO PHOSPHONOTHREONINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 TPO C4 H10 N O6 P FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 FUC 2(C6 H12 O5) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ARG H 87 THR H 91 5 5 HELIX 3 AA3 PRO B 337 ASN B 343 1 7 HELIX 4 AA4 ASP B 364 ASN B 370 1 7 HELIX 5 AA5 THR B 385 ASP B 389 5 5 HELIX 6 AA6 GLU B 406 ALA B 411 5 6 HELIX 7 AA7 SER B 438 SER B 443 1 6 HELIX 8 AA8 GLY B 502 TYR B 505 5 4 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA1 4 THR H 69 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA2 6 GLU H 10 VAL H 11 0 SHEET 2 AA2 6 THR H 121 THR H 124 1 O THR H 124 N GLU H 10 SHEET 3 AA2 6 ALA H 92 VAL H 99 -1 N TYR H 94 O THR H 121 SHEET 4 AA2 6 ALA H 33 GLN H 39 -1 N GLN H 39 O VAL H 93 SHEET 5 AA2 6 LEU H 45 ILE H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 ILE H 57 TYR H 60 -1 O ILE H 57 N ILE H 52 SHEET 1 AA3 4 GLU H 10 VAL H 11 0 SHEET 2 AA3 4 THR H 121 THR H 124 1 O THR H 124 N GLU H 10 SHEET 3 AA3 4 ALA H 92 VAL H 99 -1 N TYR H 94 O THR H 121 SHEET 4 AA3 4 MET H 114 TRP H 117 -1 O VAL H 116 N LYS H 98 SHEET 1 AA4 2 ASN H 102 ILE H 103 0 SHEET 2 AA4 2 TYR H 109 TYR H 110 -1 O TYR H 110 N ASN H 102 SHEET 1 AA5 5 SER H1009 VAL H1012 0 SHEET 2 AA5 5 THR H1103 VAL H1107 1 O LYS H1104 N VAL H1010 SHEET 3 AA5 5 ALA H1083 ALA H1090 -1 N TYR H1085 O THR H1103 SHEET 4 AA5 5 TYR H1033 GLN H1037 -1 N TYR H1033 O GLN H1088 SHEET 5 AA5 5 VAL H1044 ILE H1047 -1 O VAL H1044 N GLN H1036 SHEET 1 AA6 4 SER H1009 VAL H1012 0 SHEET 2 AA6 4 THR H1103 VAL H1107 1 O LYS H1104 N VAL H1010 SHEET 3 AA6 4 ALA H1083 ALA H1090 -1 N TYR H1085 O THR H1103 SHEET 4 AA6 4 VAL H1097 PHE H1099 -1 O VAL H1098 N SER H1089 SHEET 1 AA7 3 ALA H1018 CYS H1022 0 SHEET 2 AA7 3 THR H1069 ILE H1074 -1 O LEU H1072 N ILE H1020 SHEET 3 AA7 3 PHE H1061 SER H1066 -1 N SER H1062 O THR H1073 SHEET 1 AA8 5 ASN B 354 ILE B 358 0 SHEET 2 AA8 5 VAL B 395 ARG B 403 -1 O VAL B 395 N ILE B 358 SHEET 3 AA8 5 PRO B 507 PHE B 515 -1 O VAL B 512 N ASP B 398 SHEET 4 AA8 5 GLY B 431 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA8 5 THR B 376 CYS B 379 -1 N LYS B 378 O VAL B 433 SHEET 1 AA9 2 CYS B 391 PHE B 392 0 SHEET 2 AA9 2 VAL B 524 CYS B 525 -1 O VAL B 524 N PHE B 392 SHEET 1 AB1 2 LEU B 452 ARG B 454 0 SHEET 2 AB1 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AB2 2 TYR B 473 GLN B 474 0 SHEET 2 AB2 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 2 CYS H 1022 CYS H 1087 1555 1555 2.04 SSBOND 3 CYS B 336 CYS B 361 1555 1555 2.04 SSBOND 4 CYS B 379 CYS B 432 1555 1555 2.04 SSBOND 5 CYS B 391 CYS B 525 1555 1555 2.11 SSBOND 6 CYS B 480 CYS B 488 1555 1555 2.03 LINK ND2 ASN B 343 C1 NAG A 1 1555 1555 1.42 LINK C ALA B 344 N TPO B 345 1555 1555 1.33 LINK C TPO B 345 N ARG B 346 1555 1555 1.33 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.46 LINK O3 NAG A 1 C1 FUC A 4 1555 1555 1.43 LINK O6 NAG A 1 C1 FUC A 5 1555 1555 1.44 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.45 CRYST1 206.958 57.925 47.207 90.00 100.43 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004832 0.000000 0.000890 0.00000 SCALE2 0.000000 0.017264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021539 0.00000