data_7D12 # _entry.id 7D12 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.341 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 7D12 WWPDB D_1300017354 BMRB 36382 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR solution structures of CAG RNA-DB213 binding complex' _pdbx_database_related.db_id 36382 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7D12 _pdbx_database_status.recvd_initial_deposition_date 2020-09-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chan, H.Y.E.' 1 0000-0003-4307-474X 'Guo, P.' 2 0000-0001-7760-5786 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 118 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'CAG RNAs induce DNA damage and apoptosis by silencing NUDT16 expression in polyglutamine degeneration.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2022940118 _citation.pdbx_database_id_PubMed 33947817 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Peng, S.' 1 0000-0002-9249-4727 primary 'Guo, P.' 2 0000-0001-7760-5786 primary 'Lin, X.' 3 0000-0002-2559-2343 primary 'An, Y.' 4 ? primary 'Sze, K.H.' 5 ? primary 'Lau, M.H.Y.' 6 ? primary 'Chen, Z.S.' 7 0000-0002-9276-0378 primary 'Wang, Q.' 8 ? primary 'Li, W.' 9 ? primary 'Sun, J.K.' 10 ? primary 'Ma, S.Y.' 11 ? primary 'Chan, T.F.' 12 ? primary 'Lau, K.F.' 13 ? primary 'Ngo, J.C.K.' 14 ? primary 'Kwan, K.M.' 15 0000-0002-1246-2398 primary 'Wong, C.H.' 16 ? primary 'Lam, S.L.' 17 ? primary 'Zimmerman, S.C.' 18 0000-0002-5333-3437 primary 'Tuccinardi, T.' 19 0000-0002-6205-4069 primary 'Zuo, Z.' 20 ? primary 'Au-Yeung, H.Y.' 21 0000-0002-7216-7921 primary 'Chow, H.M.' 22 ? primary 'Chan, H.Y.E.' 23 0000-0003-4307-474X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*CP*UP*UP*CP*GP*GP*CP*AP*GP*CP*AP*GP*C)-3') ; 6436.911 1 ? ? ? ? 2 non-polymer syn "N'-{(Z)-amino[4-(amino{[3-(dimethylammonio)propyl]iminio}methyl)phenyl]methylidene}-N,N-dimethylpropane-1,3-diaminium" 336.519 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 15 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCAGCAGCUUCGGCAGCAGC _entity_poly.pdbx_seq_one_letter_code_can GCAGCAGCUUCGGCAGCAGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 A n 1 4 G n 1 5 C n 1 6 A n 1 7 G n 1 8 C n 1 9 U n 1 10 U n 1 11 C n 1 12 G n 1 13 G n 1 14 C n 1 15 A n 1 16 G n 1 17 C n 1 18 A n 1 19 G n 1 20 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 20 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7D12 _struct_ref.pdbx_db_accession 7D12 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7D12 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 20 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7D12 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 20 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 L94 non-polymer . "N'-{(Z)-amino[4-(amino{[3-(dimethylammonio)propyl]iminio}methyl)phenyl]methylidene}-N,N-dimethylpropane-1,3-diaminium" ? 'C18 H36 N6 4' 336.519 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-1H COSY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 283 _pdbx_nmr_exptl_sample_conditions.pressure_units bar _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10.0 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err 0.1 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label Condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.1 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err 0.01 _pdbx_nmr_exptl_sample_conditions.temperature_err 0.2 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.4 mM No RNA, 0.4 mM No Ligand, 10.0 mM No NaPi, 0.02 mM No DSS, 0.1 mM No EDTA, 100% D2O' _pdbx_nmr_sample_details.solvent_system '100% D2O' _pdbx_nmr_sample_details.label 'No label' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details '0.4 mM RNA, 0.4 mM ligand DB213, 10 mM NaPi (pH 7), 0.02 mM DSS, 0.1 mM EDTA.' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 7D12 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 7D12 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7D12 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'chemical shift assignment' TopSpin ? 'Bruker Biospin' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7D12 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7D12 _struct.title 'NMR solution structures of CAG RNA-DB213 binding complex' _struct.pdbx_descriptor ;RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*CP*UP*UP*CP*GP*GP*CP*AP*GP*CP*AP*GP*C)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7D12 _struct_keywords.text 'RNA, CAG RNA, Ligand, Complex' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A C 2 OP1 ? ? ? 1_555 Q NA . NA ? ? A C 2 A NA 116 1_555 ? ? ? ? ? ? ? 2.816 ? ? metalc2 metalc ? ? A A 3 OP2 ? ? ? 1_555 Q NA . NA ? ? A A 3 A NA 116 1_555 ? ? ? ? ? ? ? 2.212 ? ? metalc3 metalc ? ? A A 6 OP1 ? ? ? 1_555 C NA . NA ? ? A A 6 A NA 102 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc4 metalc ? ? A G 7 OP2 ? ? ? 1_555 C NA . NA ? ? A G 7 A NA 102 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc5 metalc ? ? A G 7 OP1 ? ? ? 1_555 G NA . NA ? ? A G 7 A NA 106 1_555 ? ? ? ? ? ? ? 2.216 ? ? metalc6 metalc ? ? A G 7 OP1 ? ? ? 1_555 N NA . NA ? ? A G 7 A NA 113 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc7 metalc ? ? A C 8 OP1 ? ? ? 1_555 N NA . NA ? ? A C 8 A NA 113 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc8 metalc ? ? A U 9 OP1 ? ? ? 1_555 F NA . NA ? ? A U 9 A NA 105 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc9 metalc ? ? A G 13 "O5'" ? ? ? 1_555 E NA . NA ? ? A G 13 A NA 104 1_555 ? ? ? ? ? ? ? 2.600 ? ? metalc10 metalc ? ? A C 14 OP2 ? ? ? 1_555 E NA . NA ? ? A C 14 A NA 104 1_555 ? ? ? ? ? ? ? 2.306 ? ? metalc11 metalc ? ? A G 16 "O3'" ? ? ? 1_555 H NA . NA ? ? A G 16 A NA 107 1_555 ? ? ? ? ? ? ? 2.710 ? ? metalc12 metalc ? ? A C 17 OP1 ? ? ? 1_555 H NA . NA ? ? A C 17 A NA 107 1_555 ? ? ? ? ? ? ? 2.263 ? ? metalc13 metalc ? ? A G 19 OP2 ? ? ? 1_555 D NA . NA ? ? A G 19 A NA 103 1_555 ? ? ? ? ? ? ? 2.218 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 1 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 1 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 1 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 2 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 2 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 2 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A A 18 N6 ? ? A A 3 A A 18 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 4 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 4 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 4 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 5 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 5 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 5 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 7 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 7 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 7 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 13 N1 ? ? A C 8 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 13 O6 ? ? A C 8 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 13 N2 ? ? A C 8 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 9 O2 ? ? ? 1_555 A C 11 N4 ? ? A U 9 A C 11 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 7D12 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 U 10 10 10 U U A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 G 16 16 16 G G A . n A 1 17 C 17 17 17 C C A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L94 1 101 21 L94 UNK A . C 3 NA 1 102 22 NA NA A . D 3 NA 1 103 23 NA NA A . E 3 NA 1 104 24 NA NA A . F 3 NA 1 105 25 NA NA A . G 3 NA 1 106 26 NA NA A . H 3 NA 1 107 27 NA NA A . I 3 NA 1 108 28 NA NA A . J 3 NA 1 109 29 NA NA A . K 3 NA 1 110 30 NA NA A . L 3 NA 1 111 31 NA NA A . M 3 NA 1 112 32 NA NA A . N 3 NA 1 113 33 NA NA A . O 3 NA 1 114 34 NA NA A . P 3 NA 1 115 35 NA NA A . Q 3 NA 1 116 36 NA NA A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1220 ? 1 MORE -96 ? 1 'SSA (A^2)' 4550 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A C 2 ? A C 2 ? 1_555 NA ? Q NA . ? A NA 116 ? 1_555 OP2 ? A A 3 ? A A 3 ? 1_555 105.2 ? 2 OP1 ? A A 6 ? A A 6 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A G 7 ? A G 7 ? 1_555 129.4 ? 3 OP1 ? A G 7 ? A G 7 ? 1_555 NA ? N NA . ? A NA 113 ? 1_555 OP1 ? A C 8 ? A C 8 ? 1_555 87.8 ? 4 "O5'" ? A G 13 ? A G 13 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP2 ? A C 14 ? A C 14 ? 1_555 89.0 ? 5 "O3'" ? A G 16 ? A G 16 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 OP1 ? A C 17 ? A C 17 ? 1_555 58.3 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2021-05-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_entry_details.entry_id 7D12 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 RNA 0.4 ? mM No 1 Ligand 0.4 ? mM No 1 NaPi 10.0 ? mM No 1 DSS 0.02 ? mM No 1 EDTA 0.1 ? mM No # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO2'" A A 3 ? ? OP1 A G 4 ? ? 1.47 2 1 "HO2'" A U 9 ? ? O6 A G 12 ? ? 1.54 3 2 "HO2'" A U 9 ? ? O6 A G 12 ? ? 1.51 4 2 "HO2'" A A 3 ? ? OP1 A G 4 ? ? 1.55 5 3 "HO2'" A U 9 ? ? O6 A G 12 ? ? 1.51 6 3 "HO2'" A A 3 ? ? OP1 A G 4 ? ? 1.57 7 4 "HO2'" A A 3 ? ? OP1 A G 4 ? ? 1.51 8 4 "HO2'" A U 9 ? ? O6 A G 12 ? ? 1.55 9 5 "HO2'" A U 9 ? ? O6 A G 12 ? ? 1.60 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 4 _pdbx_validate_rmsd_bond.auth_atom_id_1 N3 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 A _pdbx_validate_rmsd_bond.auth_seq_id_1 6 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C4 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 A _pdbx_validate_rmsd_bond.auth_seq_id_2 6 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.382 _pdbx_validate_rmsd_bond.bond_target_value 1.344 _pdbx_validate_rmsd_bond.bond_deviation 0.038 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.54 121.90 -4.36 0.70 N 2 1 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.16 117.00 -3.84 0.50 N 3 1 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 114.36 118.60 -4.24 0.60 N 4 1 N1 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 123.38 118.90 4.48 0.60 N 5 1 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 117.32 121.90 -4.58 0.70 N 6 1 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 113.05 108.50 4.55 0.70 N 7 1 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 113.10 108.50 4.60 0.70 N 8 1 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 116.94 121.90 -4.96 0.70 N 9 1 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 113.88 108.50 5.38 0.70 N 10 1 N3 A G 12 ? ? C4 A G 12 ? ? C5 A G 12 ? ? 124.00 128.60 -4.60 0.50 N 11 1 N3 A G 12 ? ? C4 A G 12 ? ? N9 A G 12 ? ? 129.77 126.00 3.77 0.60 N 12 1 N3 A G 12 ? ? C2 A G 12 ? ? N2 A G 12 ? ? 115.68 119.90 -4.22 0.70 N 13 1 C4 A A 15 ? ? C5 A A 15 ? ? C6 A A 15 ? ? 114.00 117.00 -3.00 0.50 N 14 1 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 113.87 118.60 -4.73 0.60 N 15 1 N3 A G 16 ? ? C4 A G 16 ? ? C5 A G 16 ? ? 125.40 128.60 -3.20 0.50 N 16 1 N3 A C 17 ? ? C4 A C 17 ? ? C5 A C 17 ? ? 124.68 121.90 2.78 0.40 N 17 1 N1 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 123.73 118.90 4.83 0.60 N 18 1 C4 A A 18 ? ? C5 A A 18 ? ? C6 A A 18 ? ? 112.79 117.00 -4.21 0.50 N 19 1 C5 A A 18 ? ? C6 A A 18 ? ? N1 A A 18 ? ? 121.07 117.70 3.37 0.50 N 20 1 N1 A A 18 ? ? C6 A A 18 ? ? N6 A A 18 ? ? 113.00 118.60 -5.60 0.60 N 21 1 N1 A C 20 ? ? C2 A C 20 ? ? O2 A C 20 ? ? 122.69 118.90 3.79 0.60 N 22 2 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.15 118.60 -4.45 0.60 N 23 2 "C5'" A C 5 ? ? "C4'" A C 5 ? ? "O4'" A C 5 ? ? 115.52 109.80 5.72 0.90 N 24 2 N1 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 123.34 118.90 4.44 0.60 N 25 2 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 117.52 121.90 -4.38 0.70 N 26 2 C4 A A 6 ? ? C5 A A 6 ? ? C6 A A 6 ? ? 113.89 117.00 -3.11 0.50 N 27 2 C5 A A 6 ? ? C6 A A 6 ? ? N1 A A 6 ? ? 121.19 117.70 3.49 0.50 N 28 2 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 112.20 118.60 -6.40 0.60 N 29 2 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 116.64 121.90 -5.26 0.70 N 30 2 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 112.81 108.50 4.31 0.70 N 31 2 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 117.07 121.90 -4.83 0.70 N 32 2 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 114.27 108.50 5.77 0.70 N 33 2 C5 A G 12 ? ? C6 A G 12 ? ? N1 A G 12 ? ? 115.66 111.50 4.16 0.50 N 34 2 N1 A C 14 ? ? C2 A C 14 ? ? O2 A C 14 ? ? 122.98 118.90 4.08 0.60 N 35 2 N3 A C 14 ? ? C2 A C 14 ? ? O2 A C 14 ? ? 116.56 121.90 -5.34 0.70 N 36 2 C5 A A 18 ? ? C6 A A 18 ? ? N1 A A 18 ? ? 120.71 117.70 3.01 0.50 N 37 2 N1 A G 19 ? ? C6 A G 19 ? ? O6 A G 19 ? ? 115.67 119.90 -4.23 0.60 N 38 2 N3 A C 20 ? ? C2 A C 20 ? ? O2 A C 20 ? ? 117.35 121.90 -4.55 0.70 N 39 3 N1 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 123.38 118.90 4.48 0.60 N 40 3 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.38 121.90 -4.52 0.70 N 41 3 "O4'" A A 6 ? ? "C1'" A A 6 ? ? N9 A A 6 ? ? 113.06 108.50 4.56 0.70 N 42 3 C4 A A 6 ? ? C5 A A 6 ? ? C6 A A 6 ? ? 113.33 117.00 -3.67 0.50 N 43 3 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 113.36 118.60 -5.24 0.60 N 44 3 "C5'" A C 8 ? ? "C4'" A C 8 ? ? "O4'" A C 8 ? ? 115.25 109.80 5.45 0.90 N 45 3 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 117.41 121.90 -4.49 0.70 N 46 3 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 112.86 108.50 4.36 0.70 N 47 3 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 113.01 108.50 4.51 0.70 N 48 3 C6 A C 14 ? ? N1 A C 14 ? ? C2 A C 14 ? ? 117.79 120.30 -2.51 0.40 N 49 3 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 112.75 118.60 -5.85 0.60 N 50 3 "O4'" A G 16 ? ? "C1'" A G 16 ? ? N9 A G 16 ? ? 112.98 108.50 4.48 0.70 N 51 3 C8 A G 16 ? ? N9 A G 16 ? ? C4 A G 16 ? ? 103.96 106.40 -2.44 0.40 N 52 3 N3 A C 17 ? ? C4 A C 17 ? ? C5 A C 17 ? ? 124.44 121.90 2.54 0.40 N 53 3 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 117.65 121.90 -4.25 0.70 N 54 3 N1 A A 18 ? ? C6 A A 18 ? ? N6 A A 18 ? ? 112.30 118.60 -6.30 0.60 N 55 3 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 112.97 108.50 4.47 0.70 N 56 3 N1 A C 20 ? ? C2 A C 20 ? ? O2 A C 20 ? ? 122.98 118.90 4.08 0.60 N 57 3 N3 A C 20 ? ? C2 A C 20 ? ? O2 A C 20 ? ? 117.25 121.90 -4.65 0.70 N 58 4 N1 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 122.79 118.90 3.89 0.60 N 59 4 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.19 118.60 -5.41 0.60 N 60 4 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 117.59 121.90 -4.31 0.70 N 61 4 C5 A A 6 ? ? C6 A A 6 ? ? N1 A A 6 ? ? 120.74 117.70 3.04 0.50 N 62 4 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 114.72 118.60 -3.88 0.60 N 63 4 "C5'" A C 8 ? ? "C4'" A C 8 ? ? "O4'" A C 8 ? ? 116.52 109.80 6.72 0.90 N 64 4 "O4'" A C 8 ? ? "C1'" A C 8 ? ? N1 A C 8 ? ? 113.99 108.50 5.49 0.70 N 65 4 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 117.27 121.90 -4.63 0.70 N 66 4 N1 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 123.25 118.90 4.35 0.60 N 67 4 N3 A C 14 ? ? C2 A C 14 ? ? O2 A C 14 ? ? 117.18 121.90 -4.72 0.70 N 68 4 "C5'" A C 17 ? ? "C4'" A C 17 ? ? "O4'" A C 17 ? ? 115.78 109.80 5.98 0.90 N 69 4 C4 A A 18 ? ? C5 A A 18 ? ? C6 A A 18 ? ? 113.48 117.00 -3.52 0.50 N 70 4 C5 A A 18 ? ? C6 A A 18 ? ? N1 A A 18 ? ? 121.28 117.70 3.58 0.50 N 71 4 N1 A A 18 ? ? C6 A A 18 ? ? N6 A A 18 ? ? 113.53 118.60 -5.07 0.60 N 72 4 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 113.23 108.50 4.73 0.70 N 73 4 N1 A C 20 ? ? C2 A C 20 ? ? O2 A C 20 ? ? 122.91 118.90 4.01 0.60 N 74 4 N3 A C 20 ? ? C2 A C 20 ? ? O2 A C 20 ? ? 117.43 121.90 -4.47 0.70 N 75 5 "C5'" A G 1 ? ? "C4'" A G 1 ? ? "O4'" A G 1 ? ? 115.78 109.80 5.98 0.90 N 76 5 C5 A G 1 ? ? C6 A G 1 ? ? N1 A G 1 ? ? 114.74 111.50 3.24 0.50 N 77 5 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.48 121.90 -4.42 0.70 N 78 5 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 120.82 117.70 3.12 0.50 N 79 5 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.24 108.50 5.74 0.70 N 80 5 N1 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 123.56 118.90 4.66 0.60 N 81 5 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 117.41 121.90 -4.49 0.70 N 82 5 "O4'" A A 6 ? ? "C1'" A A 6 ? ? N9 A A 6 ? ? 113.52 108.50 5.02 0.70 N 83 5 C4 A A 6 ? ? C5 A A 6 ? ? C6 A A 6 ? ? 113.82 117.00 -3.18 0.50 N 84 5 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 112.47 118.60 -6.13 0.60 N 85 5 "O4'" A C 8 ? ? "C1'" A C 8 ? ? N1 A C 8 ? ? 113.25 108.50 4.75 0.70 N 86 5 N1 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 123.31 118.90 4.41 0.60 N 87 5 N3 A C 11 ? ? C4 A C 11 ? ? C5 A C 11 ? ? 124.70 121.90 2.80 0.40 N 88 5 N1 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 123.04 118.90 4.14 0.60 N 89 5 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.75 108.50 5.25 0.70 N 90 5 N3 A C 14 ? ? C2 A C 14 ? ? O2 A C 14 ? ? 117.41 121.90 -4.49 0.70 N 91 5 "O4'" A A 18 ? ? "C1'" A A 18 ? ? N9 A A 18 ? ? 112.81 108.50 4.31 0.70 N 92 5 C4 A A 18 ? ? C5 A A 18 ? ? C6 A A 18 ? ? 113.98 117.00 -3.02 0.50 N 93 5 N3 A C 20 ? ? C2 A C 20 ? ? O2 A C 20 ? ? 117.34 121.90 -4.56 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 C A 2 ? ? 0.088 'SIDE CHAIN' 2 1 A A 3 ? ? 0.053 'SIDE CHAIN' 3 1 U A 9 ? ? 0.088 'SIDE CHAIN' 4 1 C A 14 ? ? 0.082 'SIDE CHAIN' 5 1 A A 15 ? ? 0.066 'SIDE CHAIN' 6 1 C A 20 ? ? 0.105 'SIDE CHAIN' 7 2 G A 1 ? ? 0.094 'SIDE CHAIN' 8 2 G A 4 ? ? 0.068 'SIDE CHAIN' 9 2 G A 7 ? ? 0.075 'SIDE CHAIN' 10 2 C A 14 ? ? 0.061 'SIDE CHAIN' 11 2 A A 15 ? ? 0.068 'SIDE CHAIN' 12 2 G A 16 ? ? 0.076 'SIDE CHAIN' 13 2 C A 17 ? ? 0.070 'SIDE CHAIN' 14 2 C A 20 ? ? 0.094 'SIDE CHAIN' 15 3 C A 2 ? ? 0.086 'SIDE CHAIN' 16 3 A A 3 ? ? 0.088 'SIDE CHAIN' 17 3 A A 15 ? ? 0.082 'SIDE CHAIN' 18 3 G A 16 ? ? 0.073 'SIDE CHAIN' 19 3 C A 17 ? ? 0.082 'SIDE CHAIN' 20 3 A A 18 ? ? 0.074 'SIDE CHAIN' 21 4 C A 2 ? ? 0.086 'SIDE CHAIN' 22 4 C A 11 ? ? 0.085 'SIDE CHAIN' 23 4 C A 14 ? ? 0.074 'SIDE CHAIN' 24 4 A A 15 ? ? 0.073 'SIDE CHAIN' 25 4 G A 19 ? ? 0.074 'SIDE CHAIN' 26 4 C A 20 ? ? 0.084 'SIDE CHAIN' 27 5 G A 1 ? ? 0.079 'SIDE CHAIN' 28 5 G A 4 ? ? 0.067 'SIDE CHAIN' 29 5 A A 6 ? ? 0.101 'SIDE CHAIN' 30 5 C A 8 ? ? 0.101 'SIDE CHAIN' 31 5 C A 14 ? ? 0.059 'SIDE CHAIN' 32 5 G A 16 ? ? 0.096 'SIDE CHAIN' 33 5 G A 19 ? ? 0.088 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7D12 'double helix' 7D12 'a-form double helix' 7D12 'hairpin loop' 7D12 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 20 1_555 0.047 -0.081 0.690 12.677 -7.142 0.224 1 A_G1:C20_A A 1 ? A 20 ? 19 1 1 A C 2 1_555 A G 19 1_555 -0.231 -0.107 0.235 -4.682 -19.313 -4.038 2 A_C2:G19_A A 2 ? A 19 ? 19 1 1 A A 3 1_555 A A 18 1_555 1.843 1.606 0.470 -9.795 1.384 -12.364 3 A_A3:A18_A A 3 ? A 18 ? ? 1 1 A G 4 1_555 A C 17 1_555 0.179 -0.106 -0.095 10.797 7.321 -7.072 4 A_G4:C17_A A 4 ? A 17 ? 19 1 1 A C 5 1_555 A G 16 1_555 0.104 -0.180 -0.267 7.131 -0.675 -3.071 5 A_C5:G16_A A 5 ? A 16 ? 19 1 1 A G 7 1_555 A C 14 1_555 -0.079 -0.047 -0.505 -24.220 -3.726 -1.847 6 A_G7:C14_A A 7 ? A 14 ? 19 1 1 A C 8 1_555 A G 13 1_555 -0.210 -0.032 0.062 5.874 -0.116 -2.418 7 A_C8:G13_A A 8 ? A 13 ? 19 1 1 A U 9 1_555 A C 11 1_555 1.136 0.013 -2.047 -24.790 -6.523 -50.559 8 A_U9:C11_A A 9 ? A 11 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 20 1_555 A C 2 1_555 A G 19 1_555 -0.189 -2.039 3.630 3.360 2.783 38.326 -3.461 0.736 3.451 4.222 -5.097 38.564 1 AA_G1C2:G19C20_AA A 1 ? A 20 ? A 2 ? A 19 ? 1 A C 2 1_555 A G 19 1_555 A A 3 1_555 A A 18 1_555 -1.810 -1.567 3.201 -2.368 23.589 37.095 -4.060 2.230 2.010 33.251 3.338 43.798 2 AA_C2A3:A18G19_AA A 2 ? A 19 ? A 3 ? A 18 ? 1 A A 3 1_555 A A 18 1_555 A G 4 1_555 A C 17 1_555 0.586 -2.070 3.057 2.195 -2.014 13.456 -6.653 -0.291 3.380 -8.458 -9.219 13.781 3 AA_A3G4:C17A18_AA A 3 ? A 18 ? A 4 ? A 17 ? 1 A G 4 1_555 A C 17 1_555 A C 5 1_555 A G 16 1_555 0.684 -2.070 3.574 -1.290 0.604 38.639 -3.207 -1.205 3.519 0.913 1.949 38.664 4 AA_G4C5:G16C17_AA A 4 ? A 17 ? A 5 ? A 16 ? 1 A G 7 1_555 A C 14 1_555 A C 8 1_555 A G 13 1_555 -1.225 -1.490 2.824 -6.049 2.396 8.891 -11.175 -2.234 2.629 13.350 33.706 11.013 5 AA_G7C8:G13C14_AA A 7 ? A 14 ? A 8 ? A 13 ? 1 A C 8 1_555 A G 13 1_555 A U 9 1_555 A C 11 1_555 3.837 -1.798 4.815 10.629 8.134 99.662 -1.361 -2.250 4.983 5.305 -6.933 100.320 6 AA_C8U9:C11G13_AA A 8 ? A 13 ? A 9 ? A 11 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id L94 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id L94 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "N'-{(Z)-amino[4-(amino{[3-(dimethylammonio)propyl]iminio}methyl)phenyl]methylidene}-N,N-dimethylpropane-1,3-diaminium" L94 3 'SODIUM ION' NA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #