HEADER TRANSFERASE 14-SEP-20 7D1I TITLE CRYSTAL STRUCTURE OF ACINETOBACTER BAUMANNII MURG COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(PENTAPEPTIDE) COMPND 3 PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE TRANSFERASE; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: UNDECAPRENYL-PP-MURNAC-PENTAPEPTIDE-UDPGLCNAC GLCNAC COMPND 6 TRANSFERASE; COMPND 7 EC: 2.4.1.227; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: MURG, BGC29_11725; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UNDECAPRENYLDIPHOSPHO-MURAMOYLPENTAPEPTIDE BETA-N- KEYWDS 2 ACETYLGLUCOSAMINYLTRANSFERASE ACINETOBACTER BAUMANNII, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.H.PARK,K.H.JEONG REVDAT 2 29-NOV-23 7D1I 1 REMARK REVDAT 1 14-JUL-21 7D1I 0 JRNL AUTH K.H.JUNG,S.KWON,C.M.KIM,J.H.LEE,H.H.PARK JRNL TITL PUTATIVE HEXAMERIC GLYCOSYLTRANSFERASE FUNCTIONAL UNIT JRNL TITL 2 REVEALED BY THE CRYSTAL STRUCTURE OF ACINETOBACTER BAUMANNII JRNL TITL 3 MURG JRNL REF IUCRJ V. 8 574 2021 JRNL REFN ESSN 2052-2525 JRNL DOI 10.1107/S2052252521003729 REMARK 2 REMARK 2 RESOLUTION. 3.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 31201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.843 REMARK 3 FREE R VALUE TEST SET COUNT : 1511 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1823 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7702 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00100 REMARK 3 B22 (A**2) : 0.00100 REMARK 3 B33 (A**2) : -0.00200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.555 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.865 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.832 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7838 ; 0.017 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7578 ; 0.035 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10645 ; 2.050 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17580 ; 2.360 ; 1.566 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1014 ; 5.661 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 345 ;38.848 ;23.768 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1328 ;21.433 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.481 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1072 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8715 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1447 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1966 ; 0.251 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 104 ; 0.288 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3861 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.224 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.207 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4080 ; 5.529 ; 6.723 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4079 ; 5.528 ; 6.723 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5086 ; 8.928 ;10.071 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5087 ; 8.927 ;10.071 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3758 ; 5.164 ; 6.919 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3759 ; 5.164 ; 6.919 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5559 ; 8.688 ;10.285 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5560 ; 8.687 ;10.284 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7D1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 104.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31262 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.487 REMARK 200 RESOLUTION RANGE LOW (A) : 48.264 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 9.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.57 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48900 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1F0K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH8.8, 2.6M SODIUM CHLORIDE REMARK 280 0.15M CA(OAC)2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.27450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 91.45450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 91.45450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 117.41175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 91.45450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 91.45450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.13725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 91.45450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.45450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 117.41175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 91.45450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.45450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.13725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.27450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 81170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 78.27450 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 GLN A 5 REMARK 465 GLN A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 166 REMARK 465 ASN A 167 REMARK 465 PRO A 168 REMARK 465 VAL A 169 REMARK 465 ARG A 170 REMARK 465 ARG A 171 REMARK 465 GLU A 172 REMARK 465 ILE A 173 REMARK 465 THR A 174 REMARK 465 ASP A 175 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 GLN B 5 REMARK 465 GLN B 6 REMARK 465 SER B 7 REMARK 465 LYS B 8 REMARK 465 GLN B 67 REMARK 465 GLY B 68 REMARK 465 VAL B 69 REMARK 465 ARG B 70 REMARK 465 GLY B 71 REMARK 465 ASN B 72 REMARK 465 GLY B 73 REMARK 465 VAL B 74 REMARK 465 VAL B 169 REMARK 465 ARG B 170 REMARK 465 ARG B 171 REMARK 465 GLU B 172 REMARK 465 ILE B 173 REMARK 465 THR B 174 REMARK 465 ASP B 175 REMARK 465 ILE B 176 REMARK 465 LEU B 177 REMARK 465 SER B 178 REMARK 465 PRO B 179 REMARK 465 LYS B 180 REMARK 465 TRP B 181 REMARK 465 ARG B 182 REMARK 465 TYR B 183 REMARK 465 ASP B 184 REMARK 465 GLU B 185 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASP C 3 REMARK 465 SER C 4 REMARK 465 GLN C 5 REMARK 465 GLN C 6 REMARK 465 SER C 7 REMARK 465 LYS C 8 REMARK 465 ASN C 167 REMARK 465 PRO C 168 REMARK 465 VAL C 169 REMARK 465 ARG C 170 REMARK 465 ARG C 171 REMARK 465 GLU C 172 REMARK 465 ILE C 173 REMARK 465 THR C 174 REMARK 465 ASP C 175 REMARK 465 ILE C 176 REMARK 465 LEU C 177 REMARK 465 VAL C 296 REMARK 465 ASP C 297 REMARK 465 ASP C 298 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 GLU B 256 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 TYR A 183 CD GLU A 187 1.54 REMARK 500 O THR B 165 CB ALA B 354 1.58 REMARK 500 CB ALA C 158 CE LYS C 161 1.77 REMARK 500 CE1 TYR A 183 OE1 GLU A 187 1.93 REMARK 500 CE1 TYR A 183 OE2 GLU A 187 1.98 REMARK 500 OH TYR A 183 OE2 GLU A 187 2.13 REMARK 500 NH1 ARG A 143 O SER B 319 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 166 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 PRO B 352 C - N - CA ANGL. DEV. = 12.2 DEGREES REMARK 500 LEU C 239 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 154 63.11 -106.80 REMARK 500 LEU A 177 21.52 -74.55 REMARK 500 ARG A 210 -10.17 67.91 REMARK 500 GLN A 231 8.98 51.98 REMARK 500 VAL A 290 79.71 -113.59 REMARK 500 ASP A 298 20.63 49.31 REMARK 500 ILE B 64 -78.61 -125.14 REMARK 500 ALA B 158 -161.84 73.74 REMARK 500 ALA B 245 -133.55 55.13 REMARK 500 ASP B 297 40.48 -109.14 REMARK 500 ALA B 313 147.84 179.66 REMARK 500 THR C 47 16.56 58.94 REMARK 500 THR C 164 151.06 175.22 REMARK 500 ALA C 189 -71.92 -34.06 REMARK 500 ASN C 246 30.92 -151.12 REMARK 500 ASP C 309 -71.39 -77.10 REMARK 500 ASN C 353 48.91 36.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 295 VAL B 296 -141.34 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7D1I A 1 365 UNP A0A1E3MA13_ACIBA DBREF2 7D1I A A0A1E3MA13 1 365 DBREF1 7D1I B 1 365 UNP A0A1E3MA13_ACIBA DBREF2 7D1I B A0A1E3MA13 1 365 DBREF1 7D1I C 1 365 UNP A0A1E3MA13_ACIBA DBREF2 7D1I C A0A1E3MA13 1 365 SEQRES 1 A 365 MET THR ASP SER GLN GLN SER LYS PRO LYS HIS VAL MET SEQRES 2 A 365 MET MET ALA ALA GLY THR GLY GLY HIS VAL PHE PRO ALA SEQRES 3 A 365 LEU ALA VAL ALA LYS GLN LEU GLN GLN GLN GLY CYS GLN SEQRES 4 A 365 VAL SER TRP LEU ALA THR PRO THR GLY MET GLU ASN ARG SEQRES 5 A 365 LEU LEU LYS ASP GLN ASN ILE PRO ILE TYR GLN ILE ASP SEQRES 6 A 365 ILE GLN GLY VAL ARG GLY ASN GLY VAL ILE ARG LYS LEU SEQRES 7 A 365 ALA ALA PRO PHE LYS ILE LEU LYS ALA THR PHE SER ALA SEQRES 8 A 365 MET ARG TYR MET LYS GLN LEU LYS VAL ASP ALA VAL ALA SEQRES 9 A 365 GLY PHE GLY GLY TYR VAL ALA GLY PRO GLY GLY LEU ALA SEQRES 10 A 365 ALA ARG LEU LEU GLY ILE PRO VAL LEU ILE HIS GLU GLN SEQRES 11 A 365 ASN ALA VAL ALA GLY PHE THR ASN ALA GLN LEU SER ARG SEQRES 12 A 365 VAL ALA LYS VAL VAL CYS GLU ALA PHE PRO ASN THR PHE SEQRES 13 A 365 PRO ALA SER GLU LYS VAL VAL THR THR GLY ASN PRO VAL SEQRES 14 A 365 ARG ARG GLU ILE THR ASP ILE LEU SER PRO LYS TRP ARG SEQRES 15 A 365 TYR ASP GLU ARG GLU GLN ALA ASP LYS PRO LEU ASN ILE SEQRES 16 A 365 LEU ILE VAL GLY GLY SER LEU GLY ALA LYS ALA LEU ASN SEQRES 17 A 365 GLU ARG LEU PRO PRO ALA LEU LYS GLN LEU GLU VAL PRO SEQRES 18 A 365 LEU ASN ILE PHE HIS GLN CYS GLY GLN GLN GLN VAL GLU SEQRES 19 A 365 ALA THR GLN ALA LEU TYR ALA ASP ALA PRO ALA ASN LEU SEQRES 20 A 365 THR ILE GLN VAL LEU PRO PHE ILE GLU ASP MET ALA LYS SEQRES 21 A 365 ALA TYR SER GLU ALA ASP LEU ILE ILE CYS ARG ALA GLY SEQRES 22 A 365 ALA LEU THR VAL THR GLU VAL ALA THR ALA GLY VAL ALA SEQRES 23 A 365 ALA VAL PHE VAL PRO LEU PRO ILE ALA VAL ASP ASP HIS SEQRES 24 A 365 GLN THR ALA ASN ALA LYS PHE LEU ALA ASP ILE GLY ALA SEQRES 25 A 365 ALA LYS ILE CYS GLN GLN SER THR MET THR PRO GLU VAL SEQRES 26 A 365 LEU ASN GLN LEU PHE THR THR LEU MET ASN ARG GLN LEU SEQRES 27 A 365 LEU THR GLU MET ALA VAL LYS ALA ARG GLN HIS ALA GLN SEQRES 28 A 365 PRO ASN ALA THR GLN HIS VAL VAL ASP LEU ILE GLN LYS SEQRES 29 A 365 MET SEQRES 1 B 365 MET THR ASP SER GLN GLN SER LYS PRO LYS HIS VAL MET SEQRES 2 B 365 MET MET ALA ALA GLY THR GLY GLY HIS VAL PHE PRO ALA SEQRES 3 B 365 LEU ALA VAL ALA LYS GLN LEU GLN GLN GLN GLY CYS GLN SEQRES 4 B 365 VAL SER TRP LEU ALA THR PRO THR GLY MET GLU ASN ARG SEQRES 5 B 365 LEU LEU LYS ASP GLN ASN ILE PRO ILE TYR GLN ILE ASP SEQRES 6 B 365 ILE GLN GLY VAL ARG GLY ASN GLY VAL ILE ARG LYS LEU SEQRES 7 B 365 ALA ALA PRO PHE LYS ILE LEU LYS ALA THR PHE SER ALA SEQRES 8 B 365 MET ARG TYR MET LYS GLN LEU LYS VAL ASP ALA VAL ALA SEQRES 9 B 365 GLY PHE GLY GLY TYR VAL ALA GLY PRO GLY GLY LEU ALA SEQRES 10 B 365 ALA ARG LEU LEU GLY ILE PRO VAL LEU ILE HIS GLU GLN SEQRES 11 B 365 ASN ALA VAL ALA GLY PHE THR ASN ALA GLN LEU SER ARG SEQRES 12 B 365 VAL ALA LYS VAL VAL CYS GLU ALA PHE PRO ASN THR PHE SEQRES 13 B 365 PRO ALA SER GLU LYS VAL VAL THR THR GLY ASN PRO VAL SEQRES 14 B 365 ARG ARG GLU ILE THR ASP ILE LEU SER PRO LYS TRP ARG SEQRES 15 B 365 TYR ASP GLU ARG GLU GLN ALA ASP LYS PRO LEU ASN ILE SEQRES 16 B 365 LEU ILE VAL GLY GLY SER LEU GLY ALA LYS ALA LEU ASN SEQRES 17 B 365 GLU ARG LEU PRO PRO ALA LEU LYS GLN LEU GLU VAL PRO SEQRES 18 B 365 LEU ASN ILE PHE HIS GLN CYS GLY GLN GLN GLN VAL GLU SEQRES 19 B 365 ALA THR GLN ALA LEU TYR ALA ASP ALA PRO ALA ASN LEU SEQRES 20 B 365 THR ILE GLN VAL LEU PRO PHE ILE GLU ASP MET ALA LYS SEQRES 21 B 365 ALA TYR SER GLU ALA ASP LEU ILE ILE CYS ARG ALA GLY SEQRES 22 B 365 ALA LEU THR VAL THR GLU VAL ALA THR ALA GLY VAL ALA SEQRES 23 B 365 ALA VAL PHE VAL PRO LEU PRO ILE ALA VAL ASP ASP HIS SEQRES 24 B 365 GLN THR ALA ASN ALA LYS PHE LEU ALA ASP ILE GLY ALA SEQRES 25 B 365 ALA LYS ILE CYS GLN GLN SER THR MET THR PRO GLU VAL SEQRES 26 B 365 LEU ASN GLN LEU PHE THR THR LEU MET ASN ARG GLN LEU SEQRES 27 B 365 LEU THR GLU MET ALA VAL LYS ALA ARG GLN HIS ALA GLN SEQRES 28 B 365 PRO ASN ALA THR GLN HIS VAL VAL ASP LEU ILE GLN LYS SEQRES 29 B 365 MET SEQRES 1 C 365 MET THR ASP SER GLN GLN SER LYS PRO LYS HIS VAL MET SEQRES 2 C 365 MET MET ALA ALA GLY THR GLY GLY HIS VAL PHE PRO ALA SEQRES 3 C 365 LEU ALA VAL ALA LYS GLN LEU GLN GLN GLN GLY CYS GLN SEQRES 4 C 365 VAL SER TRP LEU ALA THR PRO THR GLY MET GLU ASN ARG SEQRES 5 C 365 LEU LEU LYS ASP GLN ASN ILE PRO ILE TYR GLN ILE ASP SEQRES 6 C 365 ILE GLN GLY VAL ARG GLY ASN GLY VAL ILE ARG LYS LEU SEQRES 7 C 365 ALA ALA PRO PHE LYS ILE LEU LYS ALA THR PHE SER ALA SEQRES 8 C 365 MET ARG TYR MET LYS GLN LEU LYS VAL ASP ALA VAL ALA SEQRES 9 C 365 GLY PHE GLY GLY TYR VAL ALA GLY PRO GLY GLY LEU ALA SEQRES 10 C 365 ALA ARG LEU LEU GLY ILE PRO VAL LEU ILE HIS GLU GLN SEQRES 11 C 365 ASN ALA VAL ALA GLY PHE THR ASN ALA GLN LEU SER ARG SEQRES 12 C 365 VAL ALA LYS VAL VAL CYS GLU ALA PHE PRO ASN THR PHE SEQRES 13 C 365 PRO ALA SER GLU LYS VAL VAL THR THR GLY ASN PRO VAL SEQRES 14 C 365 ARG ARG GLU ILE THR ASP ILE LEU SER PRO LYS TRP ARG SEQRES 15 C 365 TYR ASP GLU ARG GLU GLN ALA ASP LYS PRO LEU ASN ILE SEQRES 16 C 365 LEU ILE VAL GLY GLY SER LEU GLY ALA LYS ALA LEU ASN SEQRES 17 C 365 GLU ARG LEU PRO PRO ALA LEU LYS GLN LEU GLU VAL PRO SEQRES 18 C 365 LEU ASN ILE PHE HIS GLN CYS GLY GLN GLN GLN VAL GLU SEQRES 19 C 365 ALA THR GLN ALA LEU TYR ALA ASP ALA PRO ALA ASN LEU SEQRES 20 C 365 THR ILE GLN VAL LEU PRO PHE ILE GLU ASP MET ALA LYS SEQRES 21 C 365 ALA TYR SER GLU ALA ASP LEU ILE ILE CYS ARG ALA GLY SEQRES 22 C 365 ALA LEU THR VAL THR GLU VAL ALA THR ALA GLY VAL ALA SEQRES 23 C 365 ALA VAL PHE VAL PRO LEU PRO ILE ALA VAL ASP ASP HIS SEQRES 24 C 365 GLN THR ALA ASN ALA LYS PHE LEU ALA ASP ILE GLY ALA SEQRES 25 C 365 ALA LYS ILE CYS GLN GLN SER THR MET THR PRO GLU VAL SEQRES 26 C 365 LEU ASN GLN LEU PHE THR THR LEU MET ASN ARG GLN LEU SEQRES 27 C 365 LEU THR GLU MET ALA VAL LYS ALA ARG GLN HIS ALA GLN SEQRES 28 C 365 PRO ASN ALA THR GLN HIS VAL VAL ASP LEU ILE GLN LYS SEQRES 29 C 365 MET HELIX 1 AA1 HIS A 22 GLN A 36 1 15 HELIX 2 AA2 MET A 49 LEU A 54 1 6 HELIX 3 AA3 ALA A 79 LEU A 98 1 20 HELIX 4 AA4 VAL A 110 GLY A 122 1 13 HELIX 5 AA5 GLY A 135 SER A 142 1 8 HELIX 6 AA6 TRP A 181 GLU A 187 1 7 HELIX 7 AA7 ALA A 204 GLU A 209 1 6 HELIX 8 AA8 ARG A 210 LYS A 216 1 7 HELIX 9 AA9 GLN A 232 ALA A 241 1 10 HELIX 10 AB1 ASP A 257 ALA A 265 1 9 HELIX 11 AB2 ALA A 274 GLY A 284 1 11 HELIX 12 AB3 ASP A 298 GLY A 311 1 14 HELIX 13 AB4 THR A 322 MET A 334 1 13 HELIX 14 AB5 ASN A 335 HIS A 349 1 15 HELIX 15 AB6 ALA A 354 LYS A 364 1 11 HELIX 16 AB7 HIS B 22 GLN B 36 1 15 HELIX 17 AB8 MET B 49 LEU B 54 1 6 HELIX 18 AB9 ALA B 79 LEU B 98 1 20 HELIX 19 AC1 VAL B 110 GLY B 122 1 13 HELIX 20 AC2 GLY B 135 SER B 142 1 8 HELIX 21 AC3 PHE B 152 PHE B 156 5 5 HELIX 22 AC4 ALA B 204 LYS B 216 1 13 HELIX 23 AC5 GLY B 229 GLN B 231 5 3 HELIX 24 AC6 GLN B 232 ASP B 242 1 11 HELIX 25 AC7 ASP B 257 ALA B 265 1 9 HELIX 26 AC8 GLY B 273 ALA B 283 1 11 HELIX 27 AC9 ASP B 298 GLY B 311 1 14 HELIX 28 AD1 THR B 322 MET B 334 1 13 HELIX 29 AD2 ASN B 335 HIS B 349 1 15 HELIX 30 AD3 ASN B 353 LYS B 364 1 12 HELIX 31 AD4 THR C 19 GLN C 36 1 18 HELIX 32 AD5 MET C 49 LYS C 55 1 7 HELIX 33 AD6 ALA C 79 LEU C 98 1 20 HELIX 34 AD7 VAL C 110 GLY C 122 1 13 HELIX 35 AD8 GLY C 135 SER C 142 1 8 HELIX 36 AD9 ARG C 143 ALA C 145 5 3 HELIX 37 AE1 TRP C 181 GLU C 187 1 7 HELIX 38 AE2 ALA C 204 LYS C 216 1 13 HELIX 39 AE3 GLN C 232 ASP C 242 1 11 HELIX 40 AE4 ASP C 257 ALA C 265 1 9 HELIX 41 AE5 ALA C 274 ALA C 283 1 10 HELIX 42 AE6 GLN C 300 ILE C 310 1 11 HELIX 43 AE7 THR C 322 MET C 334 1 13 HELIX 44 AE8 ASN C 335 ALA C 350 1 16 HELIX 45 AE9 ASN C 353 LYS C 364 1 12 SHEET 1 AA1 6 ILE A 61 GLN A 63 0 SHEET 2 AA1 6 GLN A 39 ALA A 44 1 N TRP A 42 O TYR A 62 SHEET 3 AA1 6 HIS A 11 MET A 15 1 N MET A 14 O SER A 41 SHEET 4 AA1 6 ALA A 102 GLY A 105 1 O ALA A 104 N MET A 15 SHEET 5 AA1 6 VAL A 125 GLU A 129 1 O LEU A 126 N GLY A 105 SHEET 6 AA1 6 VAL A 147 GLU A 150 1 O CYS A 149 N ILE A 127 SHEET 1 AA2 6 THR A 248 LEU A 252 0 SHEET 2 AA2 6 ASN A 223 GLN A 227 1 N HIS A 226 O GLN A 250 SHEET 3 AA2 6 LEU A 196 VAL A 198 1 N ILE A 197 O GLN A 227 SHEET 4 AA2 6 LEU A 267 CYS A 270 1 O LEU A 267 N LEU A 196 SHEET 5 AA2 6 ALA A 286 PHE A 289 1 O VAL A 288 N ILE A 268 SHEET 6 AA2 6 ALA A 313 ILE A 315 1 O LYS A 314 N PHE A 289 SHEET 1 AA3 7 ILE B 61 TYR B 62 0 SHEET 2 AA3 7 GLN B 39 LEU B 43 1 N TRP B 42 O TYR B 62 SHEET 3 AA3 7 HIS B 11 MET B 15 1 N MET B 14 O SER B 41 SHEET 4 AA3 7 ALA B 102 GLY B 105 1 O ALA B 104 N MET B 13 SHEET 5 AA3 7 VAL B 125 GLU B 129 1 O LEU B 126 N GLY B 105 SHEET 6 AA3 7 VAL B 147 GLU B 150 1 O CYS B 149 N ILE B 127 SHEET 7 AA3 7 LYS B 161 VAL B 163 1 O VAL B 162 N VAL B 148 SHEET 1 AA4 6 THR B 248 LEU B 252 0 SHEET 2 AA4 6 LEU B 222 GLN B 227 1 N HIS B 226 O LEU B 252 SHEET 3 AA4 6 LEU B 193 VAL B 198 1 N ILE B 197 O GLN B 227 SHEET 4 AA4 6 LEU B 267 CYS B 270 1 O ILE B 269 N LEU B 196 SHEET 5 AA4 6 ALA B 287 PHE B 289 1 O VAL B 288 N ILE B 268 SHEET 6 AA4 6 ALA B 313 ILE B 315 1 O LYS B 314 N PHE B 289 SHEET 1 AA5 7 ILE C 61 GLN C 63 0 SHEET 2 AA5 7 GLN C 39 ALA C 44 1 N TRP C 42 O TYR C 62 SHEET 3 AA5 7 HIS C 11 MET C 15 1 N MET C 14 O SER C 41 SHEET 4 AA5 7 ALA C 102 GLY C 105 1 O ALA C 104 N MET C 13 SHEET 5 AA5 7 VAL C 125 GLU C 129 1 O LEU C 126 N VAL C 103 SHEET 6 AA5 7 VAL C 147 GLU C 150 1 O CYS C 149 N ILE C 127 SHEET 7 AA5 7 LYS C 161 VAL C 163 1 O VAL C 162 N GLU C 150 SHEET 1 AA6 6 GLN C 250 LEU C 252 0 SHEET 2 AA6 6 LEU C 222 GLN C 227 1 N HIS C 226 O GLN C 250 SHEET 3 AA6 6 LEU C 193 VAL C 198 1 N ILE C 197 O GLN C 227 SHEET 4 AA6 6 LEU C 267 CYS C 270 1 O LEU C 267 N LEU C 196 SHEET 5 AA6 6 ALA C 287 PHE C 289 1 O VAL C 288 N ILE C 268 SHEET 6 AA6 6 LYS C 314 ILE C 315 1 O LYS C 314 N PHE C 289 CRYST1 182.909 182.909 156.549 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005467 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006388 0.00000