HEADER TOXIN 16-SEP-20 7D28 TITLE CRYSTAL STRUCTURE OF MAZF (FORM-I) FROM DEINOCOCCUS RADIODURANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDORIBONUCLEASE MAZF; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.1.27.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: MAZF, HAV23_04965, HAV35_11860; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS MAZEF TOXIN SYSTEM, TOXIN, ENDONUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR I.DHANASINGH,S.H.LEE REVDAT 2 29-NOV-23 7D28 1 REMARK REVDAT 1 10-FEB-21 7D28 0 JRNL AUTH I.DHANASINGH,E.CHOI,J.LEE,S.H.LEE,J.HWANG JRNL TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF DEINOCOCCUS JRNL TITL 2 RADIODURANS R1 MAZEF TOXIN-ANTITOXIN SYSTEM, DR0416-DR0417. JRNL REF J.MICROBIOL V. 59 186 2021 JRNL REFN ESSN 1976-3794 JRNL PMID 33527318 JRNL DOI 10.1007/S12275-021-0523-Z REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 67509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3502 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4876 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 249 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 494 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.208 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3446 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3228 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4690 ; 1.874 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7456 ; 1.517 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 7.553 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;28.096 ;20.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;12.316 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.844 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3874 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 734 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7D28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71103 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : 0.90800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5CK9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 5000 MME, 100 MM MES PH 6.5 REMARK 280 AND 200 MM AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.27100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.05150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.48800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.05150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.27100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.48800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 SER A 114 REMARK 465 GLU A 115 REMARK 465 LYS A 116 REMARK 465 ALA A 117 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 SER B 114 REMARK 465 GLU B 115 REMARK 465 LYS B 116 REMARK 465 ALA B 117 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 SER C 3 REMARK 465 SER C 114 REMARK 465 GLU C 115 REMARK 465 LYS C 116 REMARK 465 ALA C 117 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 SER D 3 REMARK 465 SER D 114 REMARK 465 GLU D 115 REMARK 465 LYS D 116 REMARK 465 ALA D 117 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 91 O HOH A 601 2.06 REMARK 500 O HOH B 405 O HOH B 412 2.17 REMARK 500 O3 GOL D 202 O HOH D 301 2.17 REMARK 500 O HOH B 376 O HOH C 400 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 61 CD GLU D 61 OE2 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 80 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 92 -55.41 -129.89 REMARK 500 LEU C 92 -56.57 -132.42 REMARK 500 LEU D 92 -54.03 -135.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 737 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 438 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH D 405 DISTANCE = 6.56 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 202 DBREF1 7D28 A 1 117 UNP A0A6G9BVQ8_DEIRD DBREF2 7D28 A A0A6G9BVQ8 1 117 DBREF1 7D28 B 1 117 UNP A0A6G9BVQ8_DEIRD DBREF2 7D28 B A0A6G9BVQ8 1 117 DBREF1 7D28 C 1 117 UNP A0A6G9BVQ8_DEIRD DBREF2 7D28 C A0A6G9BVQ8 1 117 DBREF1 7D28 D 1 117 UNP A0A6G9BVQ8_DEIRD DBREF2 7D28 D A0A6G9BVQ8 1 117 SEQRES 1 A 117 MET VAL SER ASP TYR VAL PRO ASP ALA GLY HIS LEU VAL SEQRES 2 A 117 TRP LEU ASN PHE THR PRO GLN ALA GLY HIS GLU GLN GLY SEQRES 3 A 117 GLY ARG ARG PRO ALA LEU VAL LEU SER PRO ALA ALA TYR SEQRES 4 A 117 ASN GLY VAL THR GLY LEU MET GLN ALA CYS PRO VAL THR SEQRES 5 A 117 SER ARG ALA LYS GLY TYR PRO PHE GLU VAL THR LEU PRO SEQRES 6 A 117 ALA HIS LEU GLY VAL SER GLY VAL VAL LEU ALA ASP HIS SEQRES 7 A 117 CYS ARG SER LEU ASP TRP ARG SER ARG ARG ALA GLU GLN SEQRES 8 A 117 LEU ALA GLU ALA PRO ALA ASP VAL LEU ALA GLU VAL ARG SEQRES 9 A 117 GLY LYS LEU GLY SER LEU LEU GLY MET SER GLU LYS ALA SEQRES 1 B 117 MET VAL SER ASP TYR VAL PRO ASP ALA GLY HIS LEU VAL SEQRES 2 B 117 TRP LEU ASN PHE THR PRO GLN ALA GLY HIS GLU GLN GLY SEQRES 3 B 117 GLY ARG ARG PRO ALA LEU VAL LEU SER PRO ALA ALA TYR SEQRES 4 B 117 ASN GLY VAL THR GLY LEU MET GLN ALA CYS PRO VAL THR SEQRES 5 B 117 SER ARG ALA LYS GLY TYR PRO PHE GLU VAL THR LEU PRO SEQRES 6 B 117 ALA HIS LEU GLY VAL SER GLY VAL VAL LEU ALA ASP HIS SEQRES 7 B 117 CYS ARG SER LEU ASP TRP ARG SER ARG ARG ALA GLU GLN SEQRES 8 B 117 LEU ALA GLU ALA PRO ALA ASP VAL LEU ALA GLU VAL ARG SEQRES 9 B 117 GLY LYS LEU GLY SER LEU LEU GLY MET SER GLU LYS ALA SEQRES 1 C 117 MET VAL SER ASP TYR VAL PRO ASP ALA GLY HIS LEU VAL SEQRES 2 C 117 TRP LEU ASN PHE THR PRO GLN ALA GLY HIS GLU GLN GLY SEQRES 3 C 117 GLY ARG ARG PRO ALA LEU VAL LEU SER PRO ALA ALA TYR SEQRES 4 C 117 ASN GLY VAL THR GLY LEU MET GLN ALA CYS PRO VAL THR SEQRES 5 C 117 SER ARG ALA LYS GLY TYR PRO PHE GLU VAL THR LEU PRO SEQRES 6 C 117 ALA HIS LEU GLY VAL SER GLY VAL VAL LEU ALA ASP HIS SEQRES 7 C 117 CYS ARG SER LEU ASP TRP ARG SER ARG ARG ALA GLU GLN SEQRES 8 C 117 LEU ALA GLU ALA PRO ALA ASP VAL LEU ALA GLU VAL ARG SEQRES 9 C 117 GLY LYS LEU GLY SER LEU LEU GLY MET SER GLU LYS ALA SEQRES 1 D 117 MET VAL SER ASP TYR VAL PRO ASP ALA GLY HIS LEU VAL SEQRES 2 D 117 TRP LEU ASN PHE THR PRO GLN ALA GLY HIS GLU GLN GLY SEQRES 3 D 117 GLY ARG ARG PRO ALA LEU VAL LEU SER PRO ALA ALA TYR SEQRES 4 D 117 ASN GLY VAL THR GLY LEU MET GLN ALA CYS PRO VAL THR SEQRES 5 D 117 SER ARG ALA LYS GLY TYR PRO PHE GLU VAL THR LEU PRO SEQRES 6 D 117 ALA HIS LEU GLY VAL SER GLY VAL VAL LEU ALA ASP HIS SEQRES 7 D 117 CYS ARG SER LEU ASP TRP ARG SER ARG ARG ALA GLU GLN SEQRES 8 D 117 LEU ALA GLU ALA PRO ALA ASP VAL LEU ALA GLU VAL ARG SEQRES 9 D 117 GLY LYS LEU GLY SER LEU LEU GLY MET SER GLU LYS ALA HET MES A 501 12 HET MES B 201 12 HET GOL B 202 6 HET MES C 201 12 HET MES D 201 12 HET GOL D 202 6 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 MES 4(C6 H13 N O4 S) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 11 HOH *494(H2 O) HELIX 1 AA1 PRO A 36 GLY A 44 1 9 HELIX 2 AA2 ASP A 77 CYS A 79 5 3 HELIX 3 AA3 PRO A 96 GLY A 112 1 17 HELIX 4 AA4 PRO B 36 GLY B 44 1 9 HELIX 5 AA5 PRO B 65 GLY B 69 5 5 HELIX 6 AA6 ASP B 77 CYS B 79 5 3 HELIX 7 AA7 PRO B 96 LEU B 111 1 16 HELIX 8 AA8 PRO C 36 GLY C 44 1 9 HELIX 9 AA9 ASP C 77 CYS C 79 5 3 HELIX 10 AB1 PRO C 96 LEU C 111 1 16 HELIX 11 AB2 PRO D 36 GLY D 44 1 9 HELIX 12 AB3 PRO D 65 GLY D 69 5 5 HELIX 13 AB4 ASP D 77 CYS D 79 5 3 HELIX 14 AB5 PRO D 96 LEU D 111 1 16 SHEET 1 AA1 4 GLU A 61 THR A 63 0 SHEET 2 AA1 4 VAL A 73 LEU A 75 -1 O VAL A 74 N VAL A 62 SHEET 3 AA1 4 LEU A 45 THR A 52 -1 N PRO A 50 O LEU A 75 SHEET 4 AA1 4 ARG A 80 ASP A 83 -1 O LEU A 82 N MET A 46 SHEET 1 AA2 6 GLU A 61 THR A 63 0 SHEET 2 AA2 6 VAL A 73 LEU A 75 -1 O VAL A 74 N VAL A 62 SHEET 3 AA2 6 LEU A 45 THR A 52 -1 N PRO A 50 O LEU A 75 SHEET 4 AA2 6 ARG A 28 VAL A 33 -1 N LEU A 32 O CYS A 49 SHEET 5 AA2 6 HIS A 11 ASN A 16 -1 N HIS A 11 O VAL A 33 SHEET 6 AA2 6 GLU A 90 GLU A 94 -1 O ALA A 93 N LEU A 12 SHEET 1 AA3 4 GLU B 61 THR B 63 0 SHEET 2 AA3 4 VAL B 73 LEU B 75 -1 O VAL B 74 N VAL B 62 SHEET 3 AA3 4 LEU B 45 THR B 52 -1 N PRO B 50 O LEU B 75 SHEET 4 AA3 4 ARG B 80 ASP B 83 -1 O LEU B 82 N MET B 46 SHEET 1 AA4 6 GLU B 61 THR B 63 0 SHEET 2 AA4 6 VAL B 73 LEU B 75 -1 O VAL B 74 N VAL B 62 SHEET 3 AA4 6 LEU B 45 THR B 52 -1 N PRO B 50 O LEU B 75 SHEET 4 AA4 6 ARG B 28 VAL B 33 -1 N LEU B 32 O CYS B 49 SHEET 5 AA4 6 HIS B 11 ASN B 16 -1 N HIS B 11 O VAL B 33 SHEET 6 AA4 6 GLU B 90 GLU B 94 -1 O GLU B 90 N TRP B 14 SHEET 1 AA5 4 GLU C 61 THR C 63 0 SHEET 2 AA5 4 VAL C 73 LEU C 75 -1 O VAL C 74 N VAL C 62 SHEET 3 AA5 4 LEU C 45 THR C 52 -1 N PRO C 50 O LEU C 75 SHEET 4 AA5 4 ARG C 80 ASP C 83 -1 O LEU C 82 N MET C 46 SHEET 1 AA6 6 GLU C 61 THR C 63 0 SHEET 2 AA6 6 VAL C 73 LEU C 75 -1 O VAL C 74 N VAL C 62 SHEET 3 AA6 6 LEU C 45 THR C 52 -1 N PRO C 50 O LEU C 75 SHEET 4 AA6 6 ARG C 28 VAL C 33 -1 N LEU C 32 O CYS C 49 SHEET 5 AA6 6 HIS C 11 ASN C 16 -1 N HIS C 11 O VAL C 33 SHEET 6 AA6 6 GLU C 90 GLU C 94 -1 O ALA C 93 N LEU C 12 SHEET 1 AA7 4 GLU D 61 LEU D 64 0 SHEET 2 AA7 4 GLY D 72 LEU D 75 -1 O VAL D 74 N VAL D 62 SHEET 3 AA7 4 LEU D 45 THR D 52 -1 N THR D 52 O VAL D 73 SHEET 4 AA7 4 ARG D 80 ASP D 83 -1 O LEU D 82 N MET D 46 SHEET 1 AA8 6 GLU D 61 LEU D 64 0 SHEET 2 AA8 6 GLY D 72 LEU D 75 -1 O VAL D 74 N VAL D 62 SHEET 3 AA8 6 LEU D 45 THR D 52 -1 N THR D 52 O VAL D 73 SHEET 4 AA8 6 ARG D 28 VAL D 33 -1 N LEU D 32 O CYS D 49 SHEET 5 AA8 6 HIS D 11 ASN D 16 -1 N HIS D 11 O VAL D 33 SHEET 6 AA8 6 GLU D 90 GLU D 94 -1 O GLU D 90 N TRP D 14 CISPEP 1 THR A 18 PRO A 19 0 5.48 CISPEP 2 THR B 18 PRO B 19 0 12.94 CISPEP 3 THR C 18 PRO C 19 0 10.66 CISPEP 4 THR D 18 PRO D 19 0 7.70 SITE 1 AC1 5 GLN A 25 ARG A 29 THR A 52 SER A 53 SITE 2 AC1 5 HOH A 688 SITE 1 AC2 8 ARG A 88 ARG B 29 PRO B 30 THR B 52 SITE 2 AC2 8 SER B 53 HOH B 319 HOH B 362 HOH B 413 SITE 1 AC3 2 ARG B 28 HOH B 353 SITE 1 AC4 9 ARG C 29 PRO C 30 VAL C 51 THR C 52 SITE 2 AC4 9 SER C 53 ARG C 54 SER C 71 HOH C 370 SITE 3 AC4 9 HOH C 405 SITE 1 AC5 6 GLN D 25 ARG D 29 THR D 52 SER D 53 SITE 2 AC5 6 LYS D 56 GOL D 202 SITE 1 AC6 7 LYS D 56 TYR D 58 HIS D 78 MES D 201 SITE 2 AC6 7 HOH D 301 HOH D 309 HOH D 346 CRYST1 48.542 74.976 120.103 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020601 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008326 0.00000