HEADER LUMINESCENT PROTEIN 17-SEP-20 7D2O TITLE SOLUTION STRUCTURE OF GAUSSIA LUCIFERASE BY NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUCIFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUC; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GAUSSIA PRINCEPS (T. SCOTT, 1894); SOURCE 3 ORGANISM_TAXID: 148582; SOURCE 4 STRAIN: T. SCOTT, 1894; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21C KEYWDS LUCIFERASE, LUMINESCENT PROTEIN EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR N.KOBAYASHI,N.WU,Y.KURODA,T.YAMAZAKI REVDAT 3 14-JUN-23 7D2O 1 REMARK REVDAT 2 09-DEC-20 7D2O 1 TITLE REVDAT 1 02-DEC-20 7D2O 0 JRNL AUTH N.WU,N.KOBAYASHI,K.TSUDA,S.UNZAI,T.SAOTOME,Y.KURODA, JRNL AUTH 2 T.YAMAZAKI JRNL TITL SOLUTION STRUCTURE OF GAUSSIA LUCIFERASE WITH FIVE DISULFIDE JRNL TITL 2 BONDS AND IDENTIFICATION OF A PUTATIVE COELENTERAZINE JRNL TITL 3 BINDING CAVITY BY HETERONUCLEAR NMR. JRNL REF SCI REP V. 10 20069 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 33208800 JRNL DOI 10.1038/S41598-020-76486-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D2O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018577. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 200 UM [U-13C; U-15N] GLUC, 50 REMARK 210 MM MES, 2 MM SODIUM AZIDE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.5, MAGRO-NMRVIEW REMARK 210 2.01.33, NMRPIPE 2017, CYANA 3.98 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-19 REMARK 465 RES C SSSEQI REMARK 465 THR A -1 REMARK 465 GLY A 0 REMARK 465 ILE A 169 REMARK 465 GLU A 170 REMARK 465 GLY A 171 REMARK 465 ARG A 172 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 3 -55.74 -160.99 REMARK 500 1 GLU A 7 -172.85 -60.69 REMARK 500 1 ASP A 8 35.01 -142.70 REMARK 500 1 THR A 21 178.21 -54.69 REMARK 500 1 ASP A 22 44.77 -88.49 REMARK 500 1 LEU A 30 160.03 60.94 REMARK 500 1 LYS A 34 150.84 64.59 REMARK 500 1 CYS A 56 -71.53 -62.30 REMARK 500 1 ILE A 73 66.60 -118.20 REMARK 500 1 THR A 79 -168.78 49.68 REMARK 500 1 ASP A 83 -178.46 57.52 REMARK 500 1 LYS A 84 87.82 52.21 REMARK 500 1 SER A 86 -58.99 -125.46 REMARK 500 1 ALA A 87 -170.29 61.00 REMARK 500 1 GLN A 88 165.37 62.20 REMARK 500 1 GLU A 108 162.56 -48.93 REMARK 500 1 CYS A 120 84.15 -68.49 REMARK 500 1 VAL A 121 32.89 -95.18 REMARK 500 1 GLN A 135 156.48 64.34 REMARK 500 1 LEU A 144 69.22 -116.76 REMARK 500 1 ALA A 149 179.48 65.59 REMARK 500 1 THR A 150 34.58 -155.25 REMARK 500 1 PHE A 151 -49.60 -150.55 REMARK 500 1 SER A 153 36.82 -179.56 REMARK 500 1 ILE A 155 132.75 -173.38 REMARK 500 1 GLN A 156 -73.06 -100.37 REMARK 500 1 ALA A 165 -170.22 62.96 REMARK 500 2 THR A 3 86.54 52.07 REMARK 500 2 ASN A 5 -39.99 -169.62 REMARK 500 2 GLU A 7 117.47 -175.41 REMARK 500 2 ASP A 22 36.38 -95.84 REMARK 500 2 LYS A 29 -41.58 -152.40 REMARK 500 2 LEU A 30 157.98 61.40 REMARK 500 2 LYS A 33 86.99 -157.49 REMARK 500 2 LYS A 34 70.85 55.82 REMARK 500 2 ILE A 73 73.29 -112.03 REMARK 500 2 THR A 79 -162.67 50.38 REMARK 500 2 GLU A 85 56.76 -154.22 REMARK 500 2 SER A 86 -172.70 58.16 REMARK 500 2 ALA A 87 -41.07 -168.35 REMARK 500 2 GLN A 88 -69.72 71.52 REMARK 500 2 ILE A 91 95.05 57.37 REMARK 500 2 GLU A 108 165.64 -47.60 REMARK 500 2 GLN A 135 41.36 -93.20 REMARK 500 2 CYS A 136 34.70 -151.43 REMARK 500 2 LEU A 144 76.07 -115.63 REMARK 500 2 ARG A 147 -70.11 -149.51 REMARK 500 2 THR A 150 47.50 -177.00 REMARK 500 2 PHE A 151 103.64 -52.06 REMARK 500 2 ALA A 152 147.35 -178.41 REMARK 500 REMARK 500 THIS ENTRY HAS 473 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36385 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF GAUSSIA LICIFERASE BY NMR DBREF 7D2O A 1 168 UNP Q9BLZ2 Q9BLZ2_9MAXI 18 185 SEQADV 7D2O THR A -1 UNP Q9BLZ2 EXPRESSION TAG SEQADV 7D2O GLY A 0 UNP Q9BLZ2 EXPRESSION TAG SEQADV 7D2O ALA A 100 UNP Q9BLZ2 GLU 117 ENGINEERED MUTATION SEQADV 7D2O ARG A 103 UNP Q9BLZ2 GLY 120 ENGINEERED MUTATION SEQADV 7D2O ILE A 169 UNP Q9BLZ2 EXPRESSION TAG SEQADV 7D2O GLU A 170 UNP Q9BLZ2 EXPRESSION TAG SEQADV 7D2O GLY A 171 UNP Q9BLZ2 EXPRESSION TAG SEQADV 7D2O ARG A 172 UNP Q9BLZ2 EXPRESSION TAG SEQRES 1 A 174 THR GLY LYS PRO THR GLU ASN ASN GLU ASP PHE ASN ILE SEQRES 2 A 174 VAL ALA VAL ALA SER ASN PHE ALA THR THR ASP LEU ASP SEQRES 3 A 174 ALA ASP ARG GLY LYS LEU PRO GLY LYS LYS LEU PRO LEU SEQRES 4 A 174 GLU VAL LEU LYS GLU MET GLU ALA ASN ALA ARG LYS ALA SEQRES 5 A 174 GLY CYS THR ARG GLY CYS LEU ILE CYS LEU SER HIS ILE SEQRES 6 A 174 LYS CYS THR PRO LYS MET LYS LYS PHE ILE PRO GLY ARG SEQRES 7 A 174 CYS HIS THR TYR GLU GLY ASP LYS GLU SER ALA GLN GLY SEQRES 8 A 174 GLY ILE GLY GLU ALA ILE VAL ASP ILE PRO ALA ILE PRO SEQRES 9 A 174 ARG PHE LYS ASP LEU GLU PRO MET GLU GLN PHE ILE ALA SEQRES 10 A 174 GLN VAL ASP LEU CYS VAL ASP CYS THR THR GLY CYS LEU SEQRES 11 A 174 LYS GLY LEU ALA ASN VAL GLN CYS SER ASP LEU LEU LYS SEQRES 12 A 174 LYS TRP LEU PRO GLN ARG CYS ALA THR PHE ALA SER LYS SEQRES 13 A 174 ILE GLN GLY GLN VAL ASP LYS ILE LYS GLY ALA GLY GLY SEQRES 14 A 174 ASP ILE GLU GLY ARG HELIX 1 AA1 ILE A 11 ALA A 19 1 9 HELIX 2 AA2 LEU A 23 GLY A 28 1 6 HELIX 3 AA3 PRO A 36 GLY A 51 1 16 HELIX 4 AA4 THR A 53 HIS A 62 1 10 HELIX 5 AA5 THR A 66 ILE A 73 1 8 HELIX 6 AA6 PRO A 102 LEU A 107 5 6 HELIX 7 AA7 GLU A 108 CYS A 120 1 13 HELIX 8 AA8 THR A 124 ASN A 133 1 10 HELIX 9 AA9 SER A 137 LEU A 144 1 8 SSBOND 1 CYS A 52 CYS A 127 1555 1555 2.16 SSBOND 2 CYS A 56 CYS A 123 1555 1555 2.02 SSBOND 3 CYS A 59 CYS A 120 1555 1555 1.96 SSBOND 4 CYS A 65 CYS A 77 1555 1555 1.97 SSBOND 5 CYS A 136 CYS A 148 1555 1555 1.98 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1