HEADER PROTEIN BINDING 17-SEP-20 7D2Y TITLE COMPLEX OF TWO RRM DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EMBRYONIC DEVELOPMENTAL PROTEIN TOFU-6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 21U-RNA BIOGENESIS FOULED UP PROTEIN 6,MATERNAL EFFECT COMPND 5 LETHAL PROTEIN 47; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RRM2; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: TOFU-6, MEL-47, EEED8.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 9 ORGANISM_TAXID: 6239; SOURCE 10 GENE: PID-3, CELE_Y23H5A.3, Y23H5A.3; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RRM DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,S.LIAO,C.XU REVDAT 3 29-NOV-23 7D2Y 1 REMARK REVDAT 2 06-OCT-21 7D2Y 1 JRNL REVDAT 1 25-AUG-21 7D2Y 0 JRNL AUTH X.WANG,C.ZENG,S.LIAO,Z.ZHU,J.ZHANG,X.TU,X.YAO,X.FENG, JRNL AUTH 2 S.GUANG,C.XU JRNL TITL MOLECULAR BASIS FOR PICS-MEDIATED PIRNA BIOGENESIS AND CELL JRNL TITL 2 DIVISION. JRNL REF NAT COMMUN V. 12 5595 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34552083 JRNL DOI 10.1038/S41467-021-25896-7 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 27391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.3600 - 7.2075 0.92 1249 140 0.1638 0.1664 REMARK 3 2 7.2075 - 5.7489 0.94 1275 145 0.1957 0.2191 REMARK 3 3 5.7489 - 5.0305 0.99 1340 145 0.1944 0.2254 REMARK 3 4 5.0305 - 4.5743 1.00 1358 151 0.1681 0.2301 REMARK 3 5 4.5743 - 4.2485 1.00 1340 151 0.1639 0.2071 REMARK 3 6 4.2485 - 3.9993 1.00 1370 144 0.1682 0.2039 REMARK 3 7 3.9993 - 3.7999 1.00 1336 153 0.1712 0.2444 REMARK 3 8 3.7999 - 3.6352 1.00 1367 150 0.1856 0.2455 REMARK 3 9 3.6352 - 3.4957 1.00 1354 152 0.1881 0.2259 REMARK 3 10 3.4957 - 3.3754 1.00 1342 143 0.2038 0.2543 REMARK 3 11 3.3754 - 3.2702 1.00 1363 151 0.2295 0.2498 REMARK 3 12 3.2702 - 3.1769 1.00 1360 146 0.2142 0.2467 REMARK 3 13 3.1769 - 3.0935 1.00 1336 149 0.2236 0.2654 REMARK 3 14 3.0935 - 3.0182 1.00 1372 151 0.2193 0.2697 REMARK 3 15 3.0182 - 2.9497 0.93 1235 139 0.2308 0.2614 REMARK 3 16 2.9497 - 2.8870 0.85 1157 134 0.2319 0.3013 REMARK 3 17 2.8870 - 2.8294 0.75 1026 113 0.2414 0.3748 REMARK 3 18 2.8294 - 2.7761 0.66 884 104 0.2803 0.3231 REMARK 3 19 2.7761 - 2.7266 0.60 808 89 0.2893 0.3387 REMARK 3 20 2.7266 - 2.6804 0.57 781 88 0.2925 0.2730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 8 THROUGH 92) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4333 -24.9345 23.4790 REMARK 3 T TENSOR REMARK 3 T11: 0.6830 T22: 0.3447 REMARK 3 T33: 0.4578 T12: -0.2884 REMARK 3 T13: -0.1731 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.1428 L22: 1.1574 REMARK 3 L33: 1.5148 L12: 0.5940 REMARK 3 L13: -0.0074 L23: -0.2514 REMARK 3 S TENSOR REMARK 3 S11: -0.1350 S12: 0.0238 S13: 0.3941 REMARK 3 S21: 0.1958 S22: -0.0640 S23: 0.0323 REMARK 3 S31: -0.5060 S32: 0.3752 S33: 0.0807 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 7 THROUGH 91) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0820 -35.6659 -18.2384 REMARK 3 T TENSOR REMARK 3 T11: 0.4868 T22: 1.0011 REMARK 3 T33: 0.5405 T12: -0.2405 REMARK 3 T13: -0.2227 T23: 0.3280 REMARK 3 L TENSOR REMARK 3 L11: 0.4230 L22: 0.0302 REMARK 3 L33: 1.2294 L12: 0.1024 REMARK 3 L13: -0.3716 L23: -0.0182 REMARK 3 S TENSOR REMARK 3 S11: -0.1750 S12: 0.7811 S13: 0.3781 REMARK 3 S21: -0.3682 S22: 0.1353 S23: 0.2085 REMARK 3 S31: -0.2362 S32: -0.1443 S33: 0.0828 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 200 THROUGH 281) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9511 -37.0890 13.6450 REMARK 3 T TENSOR REMARK 3 T11: 0.1475 T22: 0.2465 REMARK 3 T33: 0.2784 T12: -0.0598 REMARK 3 T13: -0.0177 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.8058 L22: 1.3044 REMARK 3 L33: 2.1589 L12: 0.2042 REMARK 3 L13: 0.0025 L23: -0.2695 REMARK 3 S TENSOR REMARK 3 S11: -0.1394 S12: 0.1685 S13: 0.3912 REMARK 3 S21: 0.1379 S22: 0.0165 S23: 0.2858 REMARK 3 S31: -0.3355 S32: -0.0601 S33: 0.1100 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 201 THROUGH 281) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3386 -40.0828 -5.8640 REMARK 3 T TENSOR REMARK 3 T11: 0.1950 T22: 0.6945 REMARK 3 T33: 0.2371 T12: -0.2844 REMARK 3 T13: 0.0055 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 0.9210 L22: 0.5106 REMARK 3 L33: 1.0737 L12: 0.2588 REMARK 3 L13: -0.2544 L23: -0.3343 REMARK 3 S TENSOR REMARK 3 S11: -0.1382 S12: 0.4664 S13: 0.1861 REMARK 3 S21: -0.1671 S22: 0.1038 S23: 0.0235 REMARK 3 S31: -0.1659 S32: 0.2117 S33: 0.1133 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27391 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 37.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.0390 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.16100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7D1L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5, 2.0M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.44533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.72267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.44533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.72267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.44533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 46.72267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.44533 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.72267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 GLY B 46 REMARK 465 GLN B 47 REMARK 465 SER B 48 REMARK 465 ASN B 49 REMARK 465 ASP B 50 REMARK 465 GLY B 51 REMARK 465 GLN B 52 REMARK 465 ASN B 92 REMARK 465 GLU C 282 REMARK 465 ASP D 200 REMARK 465 GLU D 282 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CD CE NZ REMARK 470 SER A 48 OG REMARK 470 ASP A 50 CG OD1 OD2 REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 ASP B 75 CG OD1 OD2 REMARK 470 LYS B 86 CG CD CE NZ REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 LYS C 260 CD CE NZ REMARK 470 LYS C 266 CD CE NZ REMARK 470 GLN D 201 CG CD OE1 NE2 REMARK 470 LYS D 260 CG CD CE NZ REMARK 470 GLN D 268 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 82 10.83 82.52 REMARK 500 ASN B 19 38.71 80.58 REMARK 500 ASP B 75 40.12 36.77 REMARK 500 THR C 234 -149.89 -115.04 REMARK 500 ASP C 262 -177.74 -172.97 REMARK 500 GLN D 237 27.03 -142.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 301 DBREF 7D2Y A 1 92 UNP Q09293 TOFU6_CAEEL 1 92 DBREF 7D2Y B 1 92 UNP Q09293 TOFU6_CAEEL 1 92 DBREF 7D2Y C 200 282 UNP O76616 O76616_CAEEL 200 282 DBREF 7D2Y D 200 282 UNP O76616 O76616_CAEEL 200 282 SEQRES 1 A 92 MET ALA SER SER SER THR ALA TYR TYR LEU LYS ASP ALA SEQRES 2 A 92 GLY PHE HIS ILE ARG ASN ILE PRO LYS ALA TRP ASN ASP SEQRES 3 A 92 TRP ASN LEU PHE HIS VAL PHE GLN ASN PHE GLY LYS VAL SEQRES 4 A 92 SER TYR CYS ARG VAL VAL GLY GLN SER ASN ASP GLY GLN SEQRES 5 A 92 VAL GLN LEU GLY PHE VAL ASN MET MET SER VAL ALA ASP SEQRES 6 A 92 ALA ASP GLU VAL ARG LYS ASN LEU ASN ASP GLY ASN LEU SEQRES 7 A 92 ILE GLY GLU ASN PHE THR LEU LYS VAL THR ASP HIS LYS SEQRES 8 A 92 ASN SEQRES 1 B 92 MET ALA SER SER SER THR ALA TYR TYR LEU LYS ASP ALA SEQRES 2 B 92 GLY PHE HIS ILE ARG ASN ILE PRO LYS ALA TRP ASN ASP SEQRES 3 B 92 TRP ASN LEU PHE HIS VAL PHE GLN ASN PHE GLY LYS VAL SEQRES 4 B 92 SER TYR CYS ARG VAL VAL GLY GLN SER ASN ASP GLY GLN SEQRES 5 B 92 VAL GLN LEU GLY PHE VAL ASN MET MET SER VAL ALA ASP SEQRES 6 B 92 ALA ASP GLU VAL ARG LYS ASN LEU ASN ASP GLY ASN LEU SEQRES 7 B 92 ILE GLY GLU ASN PHE THR LEU LYS VAL THR ASP HIS LYS SEQRES 8 B 92 ASN SEQRES 1 C 83 ASP GLN GLU ASN MET LEU LYS ILE SER GLY TYR PRO GLY SEQRES 2 C 83 MET LEU ASN THR PHE GLY ILE ALA GLN LEU LEU THR PRO SEQRES 3 C 83 TYR ARG VAL ASN GLY ILE THR ILE THR GLY ALA GLN SER SEQRES 4 C 83 ALA VAL VAL ALA LEU GLU ASN LYS PHE GLN VAL TYR GLN SEQRES 5 C 83 ALA VAL GLN ASP PHE ASN GLY LYS LYS LEU ASP ARG ASN SEQRES 6 C 83 HIS LYS LEU GLN VAL SER SER LEU VAL VAL SER SER PRO SEQRES 7 C 83 ALA VAL PRO LEU GLU SEQRES 1 D 83 ASP GLN GLU ASN MET LEU LYS ILE SER GLY TYR PRO GLY SEQRES 2 D 83 MET LEU ASN THR PHE GLY ILE ALA GLN LEU LEU THR PRO SEQRES 3 D 83 TYR ARG VAL ASN GLY ILE THR ILE THR GLY ALA GLN SER SEQRES 4 D 83 ALA VAL VAL ALA LEU GLU ASN LYS PHE GLN VAL TYR GLN SEQRES 5 D 83 ALA VAL GLN ASP PHE ASN GLY LYS LYS LEU ASP ARG ASN SEQRES 6 D 83 HIS LYS LEU GLN VAL SER SER LEU VAL VAL SER SER PRO SEQRES 7 D 83 ALA VAL PRO LEU GLU HET SO4 C 301 5 HET SO4 D 301 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *38(H2 O) HELIX 1 AA1 ASN A 25 ASN A 35 1 11 HELIX 2 AA2 SER A 62 ASN A 72 1 11 HELIX 3 AA3 ASN B 25 ASN B 35 1 11 HELIX 4 AA4 SER B 62 ASN B 72 1 11 HELIX 5 AA5 ASP C 200 GLU C 202 5 3 HELIX 6 AA6 ASN C 215 LEU C 223 1 9 HELIX 7 AA7 ASN C 245 ASN C 257 1 13 HELIX 8 AA8 ASN D 215 LEU D 223 1 9 HELIX 9 AA9 ASN D 245 ASN D 257 1 13 SHEET 1 AA1 5 VAL A 39 SER A 48 0 SHEET 2 AA1 5 VAL A 53 MET A 60 -1 O ASN A 59 N TYR A 41 SHEET 3 AA1 5 GLY A 14 PRO A 21 -1 N ILE A 17 O GLY A 56 SHEET 4 AA1 5 PHE A 83 ASP A 89 -1 O THR A 88 N HIS A 16 SHEET 5 AA1 5 ASN A 77 GLY A 80 -1 N LEU A 78 O LEU A 85 SHEET 1 AA2 5 VAL B 39 VAL B 44 0 SHEET 2 AA2 5 GLN B 54 MET B 60 -1 O ASN B 59 N SER B 40 SHEET 3 AA2 5 GLY B 14 ILE B 20 -1 N ILE B 17 O GLY B 56 SHEET 4 AA2 5 THR B 84 ASP B 89 -1 O THR B 88 N HIS B 16 SHEET 5 AA2 5 ASN B 77 ILE B 79 -1 N LEU B 78 O LEU B 85 SHEET 1 AA3 4 VAL C 228 ILE C 233 0 SHEET 2 AA3 4 SER C 238 LEU C 243 -1 O ALA C 242 N GLY C 230 SHEET 3 AA3 4 MET C 204 SER C 208 -1 N LEU C 205 O VAL C 241 SHEET 4 AA3 4 GLN C 268 SER C 270 -1 O SER C 270 N LYS C 206 SHEET 1 AA4 2 LYS C 260 ASP C 262 0 SHEET 2 AA4 2 HIS C 265 LYS C 266 -1 O HIS C 265 N LEU C 261 SHEET 1 AA5 4 VAL D 228 ILE D 233 0 SHEET 2 AA5 4 SER D 238 LEU D 243 -1 O ALA D 242 N ASN D 229 SHEET 3 AA5 4 MET D 204 SER D 208 -1 N ILE D 207 O ALA D 239 SHEET 4 AA5 4 GLN D 268 SER D 270 -1 O SER D 270 N LYS D 206 SHEET 1 AA6 2 LYS D 260 ASP D 262 0 SHEET 2 AA6 2 HIS D 265 LYS D 266 -1 O HIS D 265 N LEU D 261 CISPEP 1 THR C 224 PRO C 225 0 6.89 CISPEP 2 THR D 224 PRO D 225 0 7.30 SITE 1 AC1 5 LYS B 11 HOH B 101 PRO C 211 GLY C 212 SITE 2 AC1 5 HIS C 265 SITE 1 AC2 4 HOH A 107 PRO D 211 GLY D 212 HIS D 265 CRYST1 116.961 116.961 140.168 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008550 0.004936 0.000000 0.00000 SCALE2 0.000000 0.009873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007134 0.00000