HEADER PROTEIN BINDING 17-SEP-20 7D2Z TITLE STRUCTURE OF SYBODY SR31 IN COMPLEX WITH THE SARS-COV-2 S RECEPTOR TITLE 2 BINDING DOMAIN (RBD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SR31 AGAINST SARS-COV-2 RBD, NON NEUTRALIZING; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPIKE PROTEIN S1; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RECEPTOR BINDING DOMAIN (RBD); COMPND 9 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 8 2; SOURCE 9 ORGANISM_COMMON: 2019-NCOV; SOURCE 10 ORGANISM_TAXID: 2697049; SOURCE 11 GENE: S, 2; SOURCE 12 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: HI5 KEYWDS CORONAVIRUS, COVID-19, NANOBODY, NEUTRALIZING ANTIBODY, RECEPTOR KEYWDS 2 BINDING PROTEIN, SARS-COV-2, S PROTEIN, SYNTHETIC ANTIBODY, VHH., KEYWDS 3 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.LI,H.CAI,H.YAO,W.QIN,D.LI REVDAT 3 29-NOV-23 7D2Z 1 REMARK REVDAT 2 01-SEP-21 7D2Z 1 JRNL REVDAT 1 17-FEB-21 7D2Z 0 JRNL AUTH H.YAO,H.CAI,T.LI,B.ZHOU,W.QIN,D.LAVILLETTE,D.LI JRNL TITL A HIGH-AFFINITY RBD-TARGETING NANOBODY IMPROVES FUSION JRNL TITL 2 PARTNER'S POTENCY AGAINST SARS-COV-2. JRNL REF PLOS PATHOG. V. 17 09328 2021 JRNL REFN ESSN 1553-7374 JRNL PMID 33657135 JRNL DOI 10.1371/JOURNAL.PPAT.1009328 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6200 - 4.4900 1.00 3008 145 0.1512 0.1757 REMARK 3 2 4.4900 - 3.5700 1.00 2812 186 0.1581 0.1843 REMARK 3 3 3.5700 - 3.1200 1.00 2875 149 0.1909 0.2102 REMARK 3 4 3.1200 - 2.8400 1.00 2825 156 0.2116 0.2263 REMARK 3 5 2.8400 - 2.6400 1.00 2789 145 0.2128 0.2684 REMARK 3 6 2.6400 - 2.4800 1.00 2877 121 0.2111 0.2327 REMARK 3 7 2.4800 - 2.3600 1.00 2795 139 0.2004 0.2042 REMARK 3 8 2.3600 - 2.2500 1.00 2778 154 0.1887 0.2185 REMARK 3 9 2.2500 - 2.1700 1.00 2820 142 0.2041 0.2631 REMARK 3 10 2.1700 - 2.0900 1.00 2790 147 0.2193 0.2577 REMARK 3 11 2.0900 - 2.0300 1.00 2803 145 0.2396 0.2938 REMARK 3 12 2.0300 - 1.9700 1.00 2794 109 0.2538 0.2525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.206 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.095 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2803 REMARK 3 ANGLE : 0.868 3785 REMARK 3 CHIRALITY : 0.054 420 REMARK 3 PLANARITY : 0.005 476 REMARK 3 DIHEDRAL : 14.112 448 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300016918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35708 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 19.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.80 REMARK 200 R MERGE (I) : 0.09070 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.42500 REMARK 200 FOR SHELL : 1.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6M0J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M SODIUM FORMATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.71500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.43000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.43000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.71500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A 115 REMARK 465 GLY A 116 REMARK 465 ARG A 117 REMARK 465 ALA A 118 REMARK 465 GLY A 119 REMARK 465 GLU A 120 REMARK 465 GLN A 121 REMARK 465 LYS A 122 REMARK 465 LEU A 123 REMARK 465 ILE A 124 REMARK 465 SER A 125 REMARK 465 GLU A 126 REMARK 465 GLU A 127 REMARK 465 ASP A 128 REMARK 465 LEU A 129 REMARK 465 ASN A 130 REMARK 465 SER A 131 REMARK 465 ALA A 132 REMARK 465 VAL A 133 REMARK 465 ASP A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 ALA B 327 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 337 46.79 -91.36 REMARK 500 ALA B 352 42.71 -107.87 REMARK 500 ASN B 422 -54.84 -123.19 REMARK 500 ASP B 428 31.22 -98.25 REMARK 500 CYS B 525 -173.33 -173.95 REMARK 500 REMARK 500 REMARK: NULL DBREF 7D2Z A -3 140 PDB 7D2Z 7D2Z -3 140 DBREF 7D2Z B 330 531 UNP P0DTC2 SPIKE_SARS2 330 531 SEQADV 7D2Z ALA B 327 UNP P0DTC2 EXPRESSION TAG SEQADV 7D2Z GLY B 328 UNP P0DTC2 EXPRESSION TAG SEQADV 7D2Z SER B 329 UNP P0DTC2 EXPRESSION TAG SEQADV 7D2Z GLY B 532 UNP P0DTC2 EXPRESSION TAG SEQADV 7D2Z THR B 533 UNP P0DTC2 EXPRESSION TAG SEQADV 7D2Z LEU B 534 UNP P0DTC2 EXPRESSION TAG SEQADV 7D2Z GLU B 535 UNP P0DTC2 EXPRESSION TAG SEQADV 7D2Z VAL B 536 UNP P0DTC2 EXPRESSION TAG SEQADV 7D2Z LEU B 537 UNP P0DTC2 EXPRESSION TAG SEQADV 7D2Z PHE B 538 UNP P0DTC2 EXPRESSION TAG SEQADV 7D2Z GLN B 539 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 144 GLY SER SER SER GLN VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 A 144 GLY LEU VAL GLN ALA GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 A 144 ALA ALA SER GLY PHE PRO VAL TRP GLN GLY GLU MET ALA SEQRES 4 A 144 TRP TYR ARG GLN ALA PRO GLY LYS GLU ARG GLU TRP VAL SEQRES 5 A 144 ALA ALA ILE SER SER MET GLY TYR LYS THR TYR TYR ALA SEQRES 6 A 144 ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SEQRES 7 A 144 ALA LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS SEQRES 8 A 144 PRO GLU ASP THR ALA VAL TYR TYR CYS ALA VAL MET VAL SEQRES 9 A 144 GLY PHE TRP TYR ALA GLY GLN GLY THR GLN VAL THR VAL SEQRES 10 A 144 SER ALA GLY ARG ALA GLY GLU GLN LYS LEU ILE SER GLU SEQRES 11 A 144 GLU ASP LEU ASN SER ALA VAL ASP HIS HIS HIS HIS HIS SEQRES 12 A 144 HIS SEQRES 1 B 213 ALA GLY SER PRO ASN ILE THR ASN LEU CYS PRO PHE GLY SEQRES 2 B 213 GLU VAL PHE ASN ALA THR ARG PHE ALA SER VAL TYR ALA SEQRES 3 B 213 TRP ASN ARG LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SEQRES 4 B 213 SER VAL LEU TYR ASN SER ALA SER PHE SER THR PHE LYS SEQRES 5 B 213 CYS TYR GLY VAL SER PRO THR LYS LEU ASN ASP LEU CYS SEQRES 6 B 213 PHE THR ASN VAL TYR ALA ASP SER PHE VAL ILE ARG GLY SEQRES 7 B 213 ASP GLU VAL ARG GLN ILE ALA PRO GLY GLN THR GLY LYS SEQRES 8 B 213 ILE ALA ASP TYR ASN TYR LYS LEU PRO ASP ASP PHE THR SEQRES 9 B 213 GLY CYS VAL ILE ALA TRP ASN SER ASN ASN LEU ASP SER SEQRES 10 B 213 LYS VAL GLY GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE SEQRES 11 B 213 ARG LYS SER ASN LEU LYS PRO PHE GLU ARG ASP ILE SER SEQRES 12 B 213 THR GLU ILE TYR GLN ALA GLY SER THR PRO CYS ASN GLY SEQRES 13 B 213 VAL GLU GLY PHE ASN CYS TYR PHE PRO LEU GLN SER TYR SEQRES 14 B 213 GLY PHE GLN PRO THR ASN GLY VAL GLY TYR GLN PRO TYR SEQRES 15 B 213 ARG VAL VAL VAL LEU SER PHE GLU LEU LEU HIS ALA PRO SEQRES 16 B 213 ALA THR VAL CYS GLY PRO LYS LYS SER THR GLY THR LEU SEQRES 17 B 213 GLU VAL LEU PHE GLN HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET FUC C 6 10 HET FUC C 7 10 HET FMT A 601 3 HET FMT A 602 3 HET GOL A 603 6 HET ACT A 604 4 HET FMT A 605 3 HET ACT B 701 4 HET FMT B 702 3 HET FMT B 703 3 HET FMT B 704 3 HET FMT B 705 3 HET FMT B 706 3 HET GOL B 707 6 HET GOL B 708 6 HET GOL B 709 6 HET FMT B 710 3 HET FMT B 711 3 HET GOL B 712 6 HET FMT B 713 3 HET FMT B 714 3 HET FMT B 715 3 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 4 FMT 13(C H2 O2) FORMUL 6 GOL 5(C3 H8 O3) FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 24 HOH *166(H2 O) HELIX 1 AA1 PRO A 28 GLY A 32 5 5 HELIX 2 AA2 ASP A 62 LYS A 65 5 4 HELIX 3 AA3 LYS A 87 THR A 91 5 5 HELIX 4 AA4 ASN B 331 LEU B 335 5 5 HELIX 5 AA5 PRO B 337 ALA B 344 1 8 HELIX 6 AA6 SER B 349 TRP B 353 5 5 HELIX 7 AA7 SER B 383 ASP B 389 5 7 HELIX 8 AA8 ASP B 405 ILE B 410 5 6 HELIX 9 AA9 GLY B 416 ASN B 422 1 7 HELIX 10 AB1 SER B 438 SER B 443 1 6 HELIX 11 AB2 GLY B 502 TYR B 505 5 4 HELIX 12 AB3 GLY B 532 GLN B 539 5 8 SHEET 1 AA1 6 SER A -1 GLN A 1 0 SHEET 2 AA1 6 THR B 376 TYR B 380 -1 O CYS B 379 N SER A 0 SHEET 3 AA1 6 GLY B 431 ASN B 437 -1 O GLY B 431 N TYR B 380 SHEET 4 AA1 6 PRO B 507 LEU B 517 -1 O VAL B 511 N ILE B 434 SHEET 5 AA1 6 THR B 393 ARG B 403 -1 N ASP B 398 O VAL B 512 SHEET 6 AA1 6 ASN B 354 ILE B 358 -1 N ILE B 358 O VAL B 395 SHEET 1 AA2 4 GLN A 3 SER A 7 0 SHEET 2 AA2 4 LEU A 18 SER A 25 -1 O SER A 25 N GLN A 3 SHEET 3 AA2 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA2 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 AA3 6 GLY A 10 VAL A 12 0 SHEET 2 AA3 6 THR A 109 VAL A 113 1 O THR A 112 N VAL A 12 SHEET 3 AA3 6 ALA A 92 MET A 99 -1 N TYR A 94 O THR A 109 SHEET 4 AA3 6 MET A 34 GLN A 39 -1 N TYR A 37 O TYR A 95 SHEET 5 AA3 6 ARG A 45 ILE A 51 -1 O ALA A 49 N TRP A 36 SHEET 6 AA3 6 THR A 58 TYR A 60 -1 O TYR A 59 N ALA A 50 SHEET 1 AA4 5 GLY A 10 VAL A 12 0 SHEET 2 AA4 5 THR A 109 VAL A 113 1 O THR A 112 N VAL A 12 SHEET 3 AA4 5 ALA A 92 MET A 99 -1 N TYR A 94 O THR A 109 SHEET 4 AA4 5 TRP A 103 ALA A 105 -1 O TYR A 104 N VAL A 98 SHEET 5 AA4 5 LEU B 368 TYR B 369 1 O TYR B 369 N ALA A 105 SHEET 1 AA5 2 LEU B 452 ARG B 454 0 SHEET 2 AA5 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA6 2 TYR B 473 GLN B 474 0 SHEET 2 AA6 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.03 SSBOND 2 CYS B 336 CYS B 361 1555 1555 2.03 SSBOND 3 CYS B 379 CYS B 432 1555 1555 2.05 SSBOND 4 CYS B 391 CYS B 525 1555 1555 2.05 SSBOND 5 CYS B 480 CYS B 488 1555 1555 2.04 LINK ND2 ASN B 343 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O3 NAG C 1 C1 FUC C 6 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 7 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.45 CRYST1 92.393 92.393 101.145 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010823 0.006249 0.000000 0.00000 SCALE2 0.000000 0.012498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009887 0.00000