data_7D31 # _entry.id 7D31 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7D31 pdb_00007d31 10.2210/pdb7d31/pdb WWPDB D_1300018657 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7D31 _pdbx_database_status.recvd_initial_deposition_date 2020-09-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, H.H.' 1 ? 'Gao, Y.Q.' 2 ? 'Sheng, J.' 3 ? 'Gan, J.H.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 460 _citation.page_last 460 _citation.title 'Structure-guided development of Pb 2+ -binding DNA aptamers.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41598-021-04243-2 _citation.pdbx_database_id_PubMed 35013452 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, H.' 1 ? primary 'Gao, Y.' 2 ? primary 'Mathivanan, J.' 3 ? primary 'Shen, F.' 4 ? primary 'Chen, X.' 5 ? primary 'Li, Y.' 6 ? primary 'Shao, Z.' 7 ? primary 'Zhang, Y.' 8 ? primary 'Shao, Q.' 9 ? primary 'Sheng, J.' 10 ? primary 'Gan, J.' 11 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7D31 _cell.details ? _cell.formula_units_Z ? _cell.length_a 40.017 _cell.length_a_esd ? _cell.length_b 40.017 _cell.length_b_esd ? _cell.length_c 99.896 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3') ; 4743.051 2 ? ? ? ? 2 non-polymer syn 'LEAD (II) ION' 207.200 2 ? ? ? ? 3 water nat water 18.015 57 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGTTGGTGTGGTTGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DT n 1 10 DG n 1 11 DG n 1 12 DT n 1 13 DT n 1 14 DG n 1 15 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 15 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7D31 _struct_ref.pdbx_db_accession 7D31 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7D31 A 1 ? 15 ? 7D31 1 ? 15 ? 1 15 2 1 7D31 B 1 ? 15 ? 7D31 1 ? 15 ? 1 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 PB non-polymer . 'LEAD (II) ION' ? 'Pb 2' 207.200 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7D31 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.65 _exptl_crystal.description Block _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10% v/v MPD, 40 mM sodium cacodylate pH 7.0, 12 mM spermine tetra-HCl, and 80 mM sodium chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-12-25 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator Mirror _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 12.900 _reflns.entry_id 7D31 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.396 _reflns.d_resolution_low 30.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16599 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 14.400 _reflns.pdbx_Rmerge_I_obs 0.109 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.600 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 2.689 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.113 _reflns.pdbx_Rpim_I_all 0.028 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.400 1.450 ? ? ? ? ? ? 1469 89.600 ? ? ? ? 0.381 ? ? ? ? ? ? ? ? 3.800 ? 0.839 ? ? 0.436 0.203 ? 1 1 0.767 ? ? 1.450 1.510 ? ? ? ? ? ? 1621 98.500 ? ? ? ? 0.374 ? ? ? ? ? ? ? ? 6.000 ? 1.077 ? ? 0.407 0.153 ? 2 1 0.896 ? ? 1.510 1.580 ? ? ? ? ? ? 1658 99.600 ? ? ? ? 0.307 ? ? ? ? ? ? ? ? 10.000 ? 1.456 ? ? 0.323 0.097 ? 3 1 0.975 ? ? 1.580 1.660 ? ? ? ? ? ? 1668 99.900 ? ? ? ? 0.232 ? ? ? ? ? ? ? ? 16.100 ? 1.917 ? ? 0.240 0.057 ? 4 1 0.990 ? ? 1.660 1.760 ? ? ? ? ? ? 1654 100.000 ? ? ? ? 0.183 ? ? ? ? ? ? ? ? 17.200 ? 2.242 ? ? 0.188 0.043 ? 5 1 0.994 ? ? 1.760 1.900 ? ? ? ? ? ? 1677 99.900 ? ? ? ? 0.155 ? ? ? ? ? ? ? ? 17.400 ? 2.464 ? ? 0.160 0.037 ? 6 1 0.994 ? ? 1.900 2.090 ? ? ? ? ? ? 1685 99.900 ? ? ? ? 0.126 ? ? ? ? ? ? ? ? 19.100 ? 2.714 ? ? 0.130 0.029 ? 7 1 0.996 ? ? 2.090 2.390 ? ? ? ? ? ? 1695 99.600 ? ? ? ? 0.108 ? ? ? ? ? ? ? ? 19.400 ? 3.129 ? ? 0.111 0.025 ? 8 1 0.997 ? ? 2.390 3.020 ? ? ? ? ? ? 1706 98.600 ? ? ? ? 0.093 ? ? ? ? ? ? ? ? 18.900 ? 3.613 ? ? 0.095 0.022 ? 9 1 0.997 ? ? 3.020 30.000 ? ? ? ? ? ? 1766 93.500 ? ? ? ? 0.078 ? ? ? ? ? ? ? ? 14.100 ? 4.144 ? ? 0.081 0.023 ? 10 1 0.997 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 33.150 _refine.B_iso_mean 18.9052 _refine.B_iso_min 11.470 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7D31 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.3960 _refine.ls_d_res_low 27.2250 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16540 _refine.ls_number_reflns_R_free 811 _refine.ls_number_reflns_R_work 15729 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.9400 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1274 _refine.ls_R_factor_R_free 0.1482 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1263 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.410 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 13.5000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0900 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.3960 _refine_hist.d_res_low 27.2250 _refine_hist.number_atoms_solvent 57 _refine_hist.number_atoms_total 689 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 30 _refine_hist.pdbx_B_iso_mean_ligand 15.53 _refine_hist.pdbx_B_iso_mean_solvent 23.28 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 630 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 706 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.997 ? 1094 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.047 ? 118 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 30 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 32.866 ? 292 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ens_id 'X-RAY DIFFRACTION' 1 ? ? ? ? ? 1 TORSIONAL ? A 292 4.842 ? 1 'X-RAY DIFFRACTION' 2 ? ? ? ? ? 2 TORSIONAL ? B 292 4.842 ? 1 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.3963 1.4838 . . 128 2432 93.0000 . . . 0.2100 0.0000 0.1669 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4838 1.5983 . . 130 2609 100.0000 . . . 0.1409 0.0000 0.1058 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5983 1.7592 . . 127 2630 100.0000 . . . 0.1118 0.0000 0.0843 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7592 2.0136 . . 139 2654 100.0000 . . . 0.1155 0.0000 0.0955 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0136 2.5367 . . 145 2673 100.0000 . . . 0.1434 0.0000 0.1279 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5367 27.225 . . 142 2731 95.0000 . . . 0.1657 0.0000 0.1454 . . . . . . . . . . . # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 'chain A' 1 2 'chain B' # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 ? A 1 A 15 'chain A' ? ? ? ? ? ? ? ? 1 2 1 ? B 1 B 15 'chain B' ? ? ? ? ? ? ? ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 7D31 _struct.title 'The TBA-Pb2+ complex in P41212 space group' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7D31 _struct_keywords.text 'Quadruplex, Pb2+-binding, DNA aptamer, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 C PB . PB ? ? A DG 1 A PB 101 1_555 ? ? ? ? ? ? ? 2.602 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 1_555 C PB . PB ? ? A DG 2 A PB 101 1_555 ? ? ? ? ? ? ? 2.647 ? ? metalc3 metalc ? ? A DG 5 O6 ? ? ? 1_555 C PB . PB ? ? A DG 5 A PB 101 1_555 ? ? ? ? ? ? ? 2.594 ? ? metalc4 metalc ? ? A DG 6 O6 ? ? ? 1_555 C PB . PB ? ? A DG 6 A PB 101 1_555 ? ? ? ? ? ? ? 2.749 ? ? metalc5 metalc ? ? A DG 10 O6 ? ? ? 1_555 C PB . PB ? ? A DG 10 A PB 101 1_555 ? ? ? ? ? ? ? 2.588 ? ? metalc6 metalc ? ? A DG 11 O6 ? ? ? 1_555 C PB . PB ? ? A DG 11 A PB 101 1_555 ? ? ? ? ? ? ? 2.659 ? ? metalc7 metalc ? ? A DG 14 O6 ? ? ? 1_555 C PB . PB ? ? A DG 14 A PB 101 1_555 ? ? ? ? ? ? ? 2.606 ? ? metalc8 metalc ? ? A DG 15 O6 ? ? ? 1_555 C PB . PB ? ? A DG 15 A PB 101 1_555 ? ? ? ? ? ? ? 2.721 ? ? metalc9 metalc ? ? B DG 1 O6 ? ? ? 1_555 D PB . PB ? ? B DG 1 B PB 101 1_555 ? ? ? ? ? ? ? 2.556 ? ? metalc10 metalc ? ? B DG 2 O6 ? ? ? 1_555 D PB . PB ? ? B DG 2 B PB 101 1_555 ? ? ? ? ? ? ? 2.703 ? ? metalc11 metalc ? ? B DG 5 O6 ? ? ? 1_555 D PB . PB ? ? B DG 5 B PB 101 1_555 ? ? ? ? ? ? ? 2.599 ? ? metalc12 metalc ? ? B DG 6 O6 ? ? ? 1_555 D PB . PB ? ? B DG 6 B PB 101 1_555 ? ? ? ? ? ? ? 2.764 ? ? metalc13 metalc ? ? B DG 10 O6 ? ? ? 1_555 D PB . PB ? ? B DG 10 B PB 101 1_555 ? ? ? ? ? ? ? 2.652 ? ? metalc14 metalc ? ? B DG 11 O6 ? ? ? 1_555 D PB . PB ? ? B DG 11 B PB 101 1_555 ? ? ? ? ? ? ? 2.602 ? ? metalc15 metalc ? ? B DG 14 O6 ? ? ? 1_555 D PB . PB ? ? B DG 14 B PB 101 1_555 ? ? ? ? ? ? ? 2.590 ? ? metalc16 metalc ? ? B DG 15 O6 ? ? ? 1_555 D PB . PB ? ? B DG 15 B PB 101 1_555 ? ? ? ? ? ? ? 2.729 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 6 O6 ? ? A DG 1 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 6 N7 ? ? A DG 1 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 15 N2 ? ? A DG 1 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 15 N1 ? ? A DG 1 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 5 N2 ? ? A DG 2 A DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 5 N1 ? ? A DG 2 A DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 2 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 2 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DT 13 O4 ? ? A DT 3 B DT 13 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog10 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DT 13 N3 ? ? A DT 3 B DT 13 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog11 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DT 12 O4 ? ? A DT 4 B DT 12 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog12 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DT 12 N3 ? ? A DT 4 B DT 12 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog13 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 11 N2 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 11 N1 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 10 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 10 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 11 N7 ? ? ? 1_555 A DG 14 N2 ? ? A DG 11 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 11 O6 ? ? ? 1_555 A DG 14 N1 ? ? A DG 11 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DT 4 O4 ? ? A DT 12 B DT 4 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog22 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DT 4 N3 ? ? A DT 12 B DT 4 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog23 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DT 3 O4 ? ? A DT 13 B DT 3 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog24 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DT 3 N3 ? ? A DT 13 B DT 3 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog25 hydrog ? ? B DG 1 N1 ? ? ? 1_555 B DG 6 O6 ? ? B DG 1 B DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? B DG 1 N2 ? ? ? 1_555 B DG 6 N7 ? ? B DG 1 B DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B DG 1 N7 ? ? ? 1_555 B DG 15 N2 ? ? B DG 1 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DG 15 N1 ? ? B DG 1 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B DG 2 N7 ? ? ? 1_555 B DG 5 N2 ? ? B DG 2 B DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? B DG 2 O6 ? ? ? 1_555 B DG 5 N1 ? ? B DG 2 B DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DG 14 O6 ? ? B DG 2 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DG 14 N7 ? ? B DG 2 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? B DG 5 N7 ? ? ? 1_555 B DG 11 N2 ? ? B DG 5 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? B DG 5 O6 ? ? ? 1_555 B DG 11 N1 ? ? B DG 5 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? B DG 6 N1 ? ? ? 1_555 B DG 10 O6 ? ? B DG 6 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? B DG 6 N2 ? ? ? 1_555 B DG 10 N7 ? ? B DG 6 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? B DG 10 N1 ? ? ? 1_555 B DG 15 O6 ? ? B DG 10 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? B DG 10 N2 ? ? ? 1_555 B DG 15 N7 ? ? B DG 10 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? B DG 11 N7 ? ? ? 1_555 B DG 14 N2 ? ? B DG 11 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? B DG 11 O6 ? ? ? 1_555 B DG 14 N1 ? ? B DG 11 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 7D31 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.024989 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024989 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010010 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P PB # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DT 3 3 3 DT DT B . n B 1 4 DT 4 4 4 DT DT B . n B 1 5 DG 5 5 5 DG DG B . n B 1 6 DG 6 6 6 DG DG B . n B 1 7 DT 7 7 7 DT DT B . n B 1 8 DG 8 8 8 DG DG B . n B 1 9 DT 9 9 9 DT DT B . n B 1 10 DG 10 10 10 DG DG B . n B 1 11 DG 11 11 11 DG DG B . n B 1 12 DT 12 12 12 DT DT B . n B 1 13 DT 13 13 13 DT DT B . n B 1 14 DG 14 14 14 DG DG B . n B 1 15 DG 15 15 15 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PB 1 101 1 PB PB A . D 2 PB 1 101 2 PB PB B . E 3 HOH 1 201 12 HOH HOH A . E 3 HOH 2 202 48 HOH HOH A . E 3 HOH 3 203 27 HOH HOH A . E 3 HOH 4 204 34 HOH HOH A . E 3 HOH 5 205 33 HOH HOH A . E 3 HOH 6 206 36 HOH HOH A . E 3 HOH 7 207 53 HOH HOH A . E 3 HOH 8 208 44 HOH HOH A . E 3 HOH 9 209 47 HOH HOH A . E 3 HOH 10 210 38 HOH HOH A . E 3 HOH 11 211 55 HOH HOH A . E 3 HOH 12 212 2 HOH HOH A . E 3 HOH 13 213 25 HOH HOH A . E 3 HOH 14 214 5 HOH HOH A . E 3 HOH 15 215 13 HOH HOH A . E 3 HOH 16 216 8 HOH HOH A . E 3 HOH 17 217 14 HOH HOH A . E 3 HOH 18 218 28 HOH HOH A . E 3 HOH 19 219 18 HOH HOH A . E 3 HOH 20 220 32 HOH HOH A . E 3 HOH 21 221 9 HOH HOH A . E 3 HOH 22 222 4 HOH HOH A . E 3 HOH 23 223 54 HOH HOH A . E 3 HOH 24 224 6 HOH HOH A . E 3 HOH 25 225 46 HOH HOH A . E 3 HOH 26 226 30 HOH HOH A . E 3 HOH 27 227 52 HOH HOH A . F 3 HOH 1 201 50 HOH HOH B . F 3 HOH 2 202 16 HOH HOH B . F 3 HOH 3 203 23 HOH HOH B . F 3 HOH 4 204 39 HOH HOH B . F 3 HOH 5 205 26 HOH HOH B . F 3 HOH 6 206 56 HOH HOH B . F 3 HOH 7 207 45 HOH HOH B . F 3 HOH 8 208 15 HOH HOH B . F 3 HOH 9 209 22 HOH HOH B . F 3 HOH 10 210 35 HOH HOH B . F 3 HOH 11 211 11 HOH HOH B . F 3 HOH 12 212 3 HOH HOH B . F 3 HOH 13 213 40 HOH HOH B . F 3 HOH 14 214 1 HOH HOH B . F 3 HOH 15 215 20 HOH HOH B . F 3 HOH 16 216 10 HOH HOH B . F 3 HOH 17 217 21 HOH HOH B . F 3 HOH 18 218 7 HOH HOH B . F 3 HOH 19 219 29 HOH HOH B . F 3 HOH 20 220 17 HOH HOH B . F 3 HOH 21 221 42 HOH HOH B . F 3 HOH 22 222 24 HOH HOH B . F 3 HOH 23 223 37 HOH HOH B . F 3 HOH 24 224 19 HOH HOH B . F 3 HOH 25 225 43 HOH HOH B . F 3 HOH 26 226 49 HOH HOH B . F 3 HOH 27 227 51 HOH HOH B . F 3 HOH 28 228 41 HOH HOH B . F 3 HOH 29 229 57 HOH HOH B . F 3 HOH 30 230 31 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1460 ? 1 MORE 1 ? 1 'SSA (A^2)' 4540 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 1_555 69.6 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 118.6 ? 3 O6 ? A DG 2 ? A DG 2 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 73.3 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 71.2 ? 5 O6 ? A DG 2 ? A DG 2 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 98.1 ? 6 O6 ? A DG 5 ? A DG 5 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 67.6 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 112.8 ? 8 O6 ? A DG 2 ? A DG 2 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 167.5 ? 9 O6 ? A DG 5 ? A DG 5 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 95.5 ? 10 O6 ? A DG 6 ? A DG 6 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 72.1 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 167.6 ? 12 O6 ? A DG 2 ? A DG 2 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 111.6 ? 13 O6 ? A DG 5 ? A DG 5 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 72.8 ? 14 O6 ? A DG 6 ? A DG 6 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 120.0 ? 15 O6 ? A DG 10 ? A DG 10 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 68.9 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 96.8 ? 17 O6 ? A DG 2 ? A DG 2 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 72.9 ? 18 O6 ? A DG 5 ? A DG 5 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 116.7 ? 19 O6 ? A DG 6 ? A DG 6 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 167.2 ? 20 O6 ? A DG 10 ? A DG 10 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 118.0 ? 21 O6 ? A DG 11 ? A DG 11 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 72.4 ? 22 O6 ? A DG 1 ? A DG 1 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 72.0 ? 23 O6 ? A DG 2 ? A DG 2 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 119.7 ? 24 O6 ? A DG 5 ? A DG 5 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 166.6 ? 25 O6 ? A DG 6 ? A DG 6 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 111.3 ? 26 O6 ? A DG 10 ? A DG 10 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 71.9 ? 27 O6 ? A DG 11 ? A DG 11 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 97.7 ? 28 O6 ? A DG 14 ? A DG 14 ? 1_555 PB ? C PB . ? A PB 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 67.6 ? 29 O6 ? B DG 1 ? B DG 1 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 69.2 ? 30 O6 ? B DG 1 ? B DG 1 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 118.4 ? 31 O6 ? B DG 2 ? B DG 2 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 72.6 ? 32 O6 ? B DG 1 ? B DG 1 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 71.3 ? 33 O6 ? B DG 2 ? B DG 2 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 98.2 ? 34 O6 ? B DG 5 ? B DG 5 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 68.5 ? 35 O6 ? B DG 1 ? B DG 1 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 112.4 ? 36 O6 ? B DG 2 ? B DG 2 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 167.2 ? 37 O6 ? B DG 5 ? B DG 5 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 96.3 ? 38 O6 ? B DG 6 ? B DG 6 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 71.2 ? 39 O6 ? B DG 1 ? B DG 1 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 168.4 ? 40 O6 ? B DG 2 ? B DG 2 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 112.4 ? 41 O6 ? B DG 5 ? B DG 5 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 72.2 ? 42 O6 ? B DG 6 ? B DG 6 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 118.9 ? 43 O6 ? B DG 10 ? B DG 10 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 68.7 ? 44 O6 ? B DG 1 ? B DG 1 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 14 ? B DG 14 ? 1_555 96.2 ? 45 O6 ? B DG 2 ? B DG 2 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 14 ? B DG 14 ? 1_555 73.1 ? 46 O6 ? B DG 5 ? B DG 5 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 14 ? B DG 14 ? 1_555 116.4 ? 47 O6 ? B DG 6 ? B DG 6 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 14 ? B DG 14 ? 1_555 166.9 ? 48 O6 ? B DG 10 ? B DG 10 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 14 ? B DG 14 ? 1_555 118.6 ? 49 O6 ? B DG 11 ? B DG 11 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 14 ? B DG 14 ? 1_555 73.9 ? 50 O6 ? B DG 1 ? B DG 1 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 72.0 ? 51 O6 ? B DG 2 ? B DG 2 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 119.6 ? 52 O6 ? B DG 5 ? B DG 5 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 167.2 ? 53 O6 ? B DG 6 ? B DG 6 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 111.0 ? 54 O6 ? B DG 10 ? B DG 10 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 71.9 ? 55 O6 ? B DG 11 ? B DG 11 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 98.1 ? 56 O6 ? B DG 14 ? B DG 14 ? 1_555 PB ? D PB . ? B PB 101 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 67.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-22 2 'Structure model' 1 1 2022-04-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12_2829 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 5 # _pdbx_entry_details.entry_id 7D31 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.28 108.30 1.98 0.30 N 2 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.11 108.30 2.81 0.30 N 3 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.81 108.30 3.51 0.30 N 4 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.54 108.30 3.24 0.30 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7D31 'double helix' 7D31 'quadruple helix' # _ndb_struct_na_base_pair.model_number 1 _ndb_struct_na_base_pair.i_label_asym_id A _ndb_struct_na_base_pair.i_label_comp_id DG _ndb_struct_na_base_pair.i_label_seq_id 1 _ndb_struct_na_base_pair.i_symmetry 1_555 _ndb_struct_na_base_pair.j_label_asym_id A _ndb_struct_na_base_pair.j_label_comp_id DG _ndb_struct_na_base_pair.j_label_seq_id 6 _ndb_struct_na_base_pair.j_symmetry 1_555 _ndb_struct_na_base_pair.shear 1.451 _ndb_struct_na_base_pair.stretch 3.479 _ndb_struct_na_base_pair.stagger 0.366 _ndb_struct_na_base_pair.buckle -5.954 _ndb_struct_na_base_pair.propeller -6.712 _ndb_struct_na_base_pair.opening -91.870 _ndb_struct_na_base_pair.pair_number 1 _ndb_struct_na_base_pair.pair_name A_DG1:DG6_A _ndb_struct_na_base_pair.i_auth_asym_id A _ndb_struct_na_base_pair.i_auth_seq_id 1 _ndb_struct_na_base_pair.i_PDB_ins_code ? _ndb_struct_na_base_pair.j_auth_asym_id A _ndb_struct_na_base_pair.j_auth_seq_id 6 _ndb_struct_na_base_pair.j_PDB_ins_code ? _ndb_struct_na_base_pair.hbond_type_28 6 _ndb_struct_na_base_pair.hbond_type_12 3 # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology (MoST, China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 2019FY101506 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PB _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PB _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'LEAD (II) ION' PB 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #