HEADER PROTEIN BINDING 18-SEP-20 7D3D TITLE CRYSTAL STRUCTURE OF SPOP BOUND WITH A PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECKLE-TYPE POZ PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 28-166; COMPND 5 SYNONYM: HIB HOMOLOG 1,ROADKILL HOMOLOG 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GLU-VAL-SER-ILE-ILE-GLN-GLY-ALA-ASP-SER-THR-THR; COMPND 9 CHAIN: a, b; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPOP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CCRCC, E3 LIGASE ADAPTOR SPOP, UBIQUITINATION, SBC MOTIF(F-PS-S/T- KEYWDS 2 S/T;F IS NONPOLAR, P IS POLAR), PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.-G.YANG,J.H.GAN REVDAT 3 29-NOV-23 7D3D 1 REMARK REVDAT 2 09-JUN-21 7D3D 1 JRNL REVDAT 1 18-NOV-20 7D3D 0 JRNL AUTH Z.WANG,H.ZHANG,B.CHEN,T.OUYANG,T.ZHENG,R.ZHOU,Z.DONG, JRNL AUTH 2 Y.HUANG,T.ZHANG,H.JIANG,J.GAN,C.LUO,C.-G.YANG JRNL TITL A PEPTIDE BINDER OF E3 LIGASE ADAPTOR SPOP DISRUPTS JRNL TITL 2 ONCOGENIC SPOP-PROTEIN INTERACTIONS IN KIDNEY CANCER CELLS. JRNL REF CHIN.J.CHEM. V. 39 271 2021 JRNL REFN ISSN 1001-604X JRNL DOI 10.1002/CJOC.202000462 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 47732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2576 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2660 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 363 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.153 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2473 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2305 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3340 ; 1.404 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5356 ; 0.867 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 6.881 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;38.052 ;24.259 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 453 ;10.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.172 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2739 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 530 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4778 ; 1.313 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 43 ;25.559 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5046 ; 6.197 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 8.149 60.760 17.625 REMARK 3 T TENSOR REMARK 3 T11: 0.0134 T22: 0.0081 REMARK 3 T33: 0.0055 T12: -0.0029 REMARK 3 T13: 0.0059 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.3715 L22: 0.5308 REMARK 3 L33: 0.6832 L12: -0.2180 REMARK 3 L13: 0.0790 L23: 0.2888 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: -0.0154 S13: -0.0131 REMARK 3 S21: 0.0176 S22: -0.0081 S23: -0.0058 REMARK 3 S31: 0.0296 S32: -0.0194 S33: 0.0033 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 166 REMARK 3 ORIGIN FOR THE GROUP (A): -11.089 60.499 -3.724 REMARK 3 T TENSOR REMARK 3 T11: 0.0325 T22: 0.0109 REMARK 3 T33: 0.0071 T12: 0.0114 REMARK 3 T13: -0.0079 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.0099 L22: 0.6684 REMARK 3 L33: 0.4708 L12: -0.2268 REMARK 3 L13: -0.1164 L23: -0.0938 REMARK 3 S TENSOR REMARK 3 S11: 0.0935 S12: -0.0027 S13: -0.0093 REMARK 3 S21: -0.0657 S22: -0.0539 S23: 0.0571 REMARK 3 S31: 0.0556 S32: 0.0091 S33: -0.0396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7D3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9735 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50483 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 49.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3IVV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM ACETATE TRIHYDRATE, PH REMARK 280 7.0, 20%(W/V) POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.59800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.09000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.27750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.09000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.59800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.27750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, a REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, b REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 28 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 LYS A 66 CE NZ REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 ARG B 45 CD NE CZ NH1 NH2 REMARK 470 GLU B 47 OE1 OE2 REMARK 470 LYS B 53 CD CE NZ REMARK 470 ASN B 62 CG OD1 ND2 REMARK 470 LYS B 64 CE NZ REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 LYS B 101 CD CE NZ REMARK 470 GLN B 165 CG CD OE1 NE2 REMARK 470 ASP B 166 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 114 -145.83 -105.35 REMARK 500 LYS A 135 55.40 -110.62 REMARK 500 LYS B 135 57.31 -110.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 351 DISTANCE = 5.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 DBREF 7D3D A 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 7D3D a 91 102 PDB 7D3D 7D3D 91 102 DBREF 7D3D B 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 7D3D b 91 102 PDB 7D3D 7D3D 91 102 SEQRES 1 A 139 LYS VAL VAL LYS PHE SER TYR MET TRP THR ILE ASN ASN SEQRES 2 A 139 PHE SER PHE CYS ARG GLU GLU MET GLY GLU VAL ILE LYS SEQRES 3 A 139 SER SER THR PHE SER SER GLY ALA ASN ASP LYS LEU LYS SEQRES 4 A 139 TRP CYS LEU ARG VAL ASN PRO LYS GLY LEU ASP GLU GLU SEQRES 5 A 139 SER LYS ASP TYR LEU SER LEU TYR LEU LEU LEU VAL SER SEQRES 6 A 139 CYS PRO LYS SER GLU VAL ARG ALA LYS PHE LYS PHE SER SEQRES 7 A 139 ILE LEU ASN ALA LYS GLY GLU GLU THR LYS ALA MET GLU SEQRES 8 A 139 SER GLN ARG ALA TYR ARG PHE VAL GLN GLY LYS ASP TRP SEQRES 9 A 139 GLY PHE LYS LYS PHE ILE ARG ARG ASP PHE LEU LEU ASP SEQRES 10 A 139 GLU ALA ASN GLY LEU LEU PRO ASP ASP LYS LEU THR LEU SEQRES 11 A 139 PHE CYS GLU VAL SER VAL VAL GLN ASP SEQRES 1 a 12 GLU VAL SER ILE ILE GLN GLY ALA ASP SER THR THR SEQRES 1 B 139 LYS VAL VAL LYS PHE SER TYR MET TRP THR ILE ASN ASN SEQRES 2 B 139 PHE SER PHE CYS ARG GLU GLU MET GLY GLU VAL ILE LYS SEQRES 3 B 139 SER SER THR PHE SER SER GLY ALA ASN ASP LYS LEU LYS SEQRES 4 B 139 TRP CYS LEU ARG VAL ASN PRO LYS GLY LEU ASP GLU GLU SEQRES 5 B 139 SER LYS ASP TYR LEU SER LEU TYR LEU LEU LEU VAL SER SEQRES 6 B 139 CYS PRO LYS SER GLU VAL ARG ALA LYS PHE LYS PHE SER SEQRES 7 B 139 ILE LEU ASN ALA LYS GLY GLU GLU THR LYS ALA MET GLU SEQRES 8 B 139 SER GLN ARG ALA TYR ARG PHE VAL GLN GLY LYS ASP TRP SEQRES 9 B 139 GLY PHE LYS LYS PHE ILE ARG ARG ASP PHE LEU LEU ASP SEQRES 10 B 139 GLU ALA ASN GLY LEU LEU PRO ASP ASP LYS LEU THR LEU SEQRES 11 B 139 PHE CYS GLU VAL SER VAL VAL GLN ASP SEQRES 1 b 12 GLU VAL SER ILE ILE GLN GLY ALA ASP SER THR THR HET GOL A 201 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *363(H2 O) HELIX 1 AA1 ASN A 40 CYS A 44 5 5 HELIX 2 AA2 ASP A 77 LYS A 81 5 5 HELIX 3 AA3 ARG A 139 ASP A 144 1 6 HELIX 4 AA4 GLU A 145 GLY A 148 5 4 HELIX 5 AA5 LEU A 150 LYS A 154 5 5 HELIX 6 AA6 ASN B 40 CYS B 44 5 5 HELIX 7 AA7 GLY B 60 LYS B 64 5 5 HELIX 8 AA8 ASP B 77 LYS B 81 5 5 HELIX 9 AA9 ARG B 139 ASP B 144 1 6 HELIX 10 AB1 GLU B 145 GLY B 148 5 4 HELIX 11 AB2 LEU B 150 LYS B 154 5 5 SHEET 1 AA1 4 VAL A 29 ILE A 38 0 SHEET 2 AA1 4 LEU A 155 VAL A 164 -1 O LEU A 155 N ILE A 38 SHEET 3 AA1 4 VAL A 98 LEU A 107 -1 N SER A 105 O PHE A 158 SHEET 4 AA1 4 TYR A 123 PHE A 125 -1 O PHE A 125 N VAL A 98 SHEET 1 AA2 5 VAL A 29 ILE A 38 0 SHEET 2 AA2 5 LEU A 155 VAL A 164 -1 O LEU A 155 N ILE A 38 SHEET 3 AA2 5 VAL A 98 LEU A 107 -1 N SER A 105 O PHE A 158 SHEET 4 AA2 5 GLU A 113 SER A 119 -1 O SER A 119 N PHE A 102 SHEET 5 AA2 5 SER a 93 GLN a 96 1 O ILE a 94 N GLU A 118 SHEET 1 AA3 4 ILE A 52 LYS A 53 0 SHEET 2 AA3 4 LYS A 66 ASN A 72 -1 O VAL A 71 N ILE A 52 SHEET 3 AA3 4 TYR A 83 SER A 92 -1 O LEU A 89 N CYS A 68 SHEET 4 AA3 4 ASP A 130 ARG A 138 -1 O TRP A 131 N LEU A 88 SHEET 1 AA4 4 VAL B 30 ILE B 38 0 SHEET 2 AA4 4 LEU B 155 GLN B 165 -1 O LEU B 155 N ILE B 38 SHEET 3 AA4 4 VAL B 98 LEU B 107 -1 N SER B 105 O PHE B 158 SHEET 4 AA4 4 TYR B 123 PHE B 125 -1 O PHE B 125 N VAL B 98 SHEET 1 AA5 5 VAL B 30 ILE B 38 0 SHEET 2 AA5 5 LEU B 155 GLN B 165 -1 O LEU B 155 N ILE B 38 SHEET 3 AA5 5 VAL B 98 LEU B 107 -1 N SER B 105 O PHE B 158 SHEET 4 AA5 5 GLU B 113 SER B 119 -1 O SER B 119 N PHE B 102 SHEET 5 AA5 5 ILE b 94 GLN b 96 1 O ILE b 94 N GLU B 118 SHEET 1 AA6 3 ILE B 52 LYS B 53 0 SHEET 2 AA6 3 LEU B 65 ASN B 72 -1 O VAL B 71 N ILE B 52 SHEET 3 AA6 3 PHE B 57 SER B 59 -1 N PHE B 57 O TRP B 67 SHEET 1 AA7 4 ILE B 52 LYS B 53 0 SHEET 2 AA7 4 LEU B 65 ASN B 72 -1 O VAL B 71 N ILE B 52 SHEET 3 AA7 4 TYR B 83 SER B 92 -1 O LEU B 89 N CYS B 68 SHEET 4 AA7 4 ASP B 130 ARG B 138 -1 O TRP B 131 N LEU B 88 SITE 1 AC1 6 PHE A 102 LYS A 103 GLU A 160 VAL A 161 SITE 2 AC1 6 SER A 162 HOH A 302 CRYST1 51.196 58.555 94.180 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019533 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010618 0.00000