HEADER DNA BINDING PROTEIN/DNA 20-SEP-20 7D3T TITLE CRYSTAL STRUCTURE OF OSPHR2 IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PHOSPHATE STARVATION RESPONSE 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: OSPHR2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*GP*CP*TP*TP*GP*AP*GP*GP*AP*TP*AP*TP*CP*CP*GP*A)-3'); COMPND 9 CHAIN: E, G; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(P*CP*TP*CP*GP*GP*AP*TP*AP*TP*CP*CP*TP*CP*AP*AP*G)-3'); COMPND 14 CHAIN: F, H; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. INDICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39946; SOURCE 5 GENE: PHR2, OSI_25821; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS PROTEIN PHOSPHATE STARVATION RESPONSE 2, MYB, DNA BINDING PROTEIN, KEYWDS 2 DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.Y.GUAN,Z.F.ZHANG,Z.LIU REVDAT 3 29-NOV-23 7D3T 1 REMARK REVDAT 2 04-MAY-22 7D3T 1 JRNL REVDAT 1 06-OCT-21 7D3T 0 JRNL AUTH Z.GUAN,Q.ZHANG,Z.ZHANG,J.ZUO,J.CHEN,R.LIU,J.SAVARIN, JRNL AUTH 2 L.BROGER,P.CHENG,Q.WANG,K.PEI,D.ZHANG,T.ZOU,J.YAN,P.YIN, JRNL AUTH 3 M.HOTHORN,Z.LIU JRNL TITL MECHANISTIC INSIGHTS INTO THE REGULATION OF PLANT PHOSPHATE JRNL TITL 2 HOMEOSTASIS BY THE RICE SPX2 - PHR2 COMPLEX. JRNL REF NAT COMMUN V. 13 1581 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35332155 JRNL DOI 10.1038/S41467-022-29275-8 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 45458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0000 - 6.7900 0.94 2691 128 0.1469 0.1544 REMARK 3 2 6.7900 - 5.3900 0.94 2675 132 0.1907 0.2037 REMARK 3 3 5.3900 - 4.7100 0.95 2733 157 0.1665 0.2057 REMARK 3 4 4.7100 - 4.2800 0.96 2744 130 0.1694 0.2233 REMARK 3 5 4.2800 - 3.9700 0.95 2706 132 0.1800 0.2493 REMARK 3 6 3.9700 - 3.7400 0.96 2724 127 0.1966 0.2930 REMARK 3 7 3.7400 - 3.5500 0.97 2777 151 0.2015 0.2629 REMARK 3 8 3.5500 - 3.4000 0.94 2614 159 0.2297 0.3268 REMARK 3 9 3.4000 - 3.2700 0.93 2666 139 0.2586 0.2698 REMARK 3 10 3.2700 - 3.1500 0.93 2643 143 0.2804 0.3309 REMARK 3 11 3.1500 - 3.0500 0.93 2630 118 0.3101 0.3802 REMARK 3 12 3.0500 - 2.9700 0.95 2699 170 0.3215 0.3278 REMARK 3 13 2.9700 - 2.8900 0.96 2728 170 0.3701 0.3762 REMARK 3 14 2.8900 - 2.8200 0.96 2725 148 0.4038 0.4714 REMARK 3 15 2.8200 - 2.7500 0.96 2748 161 0.4185 0.4493 REMARK 3 16 2.7500 - 2.7000 0.93 2666 124 0.4230 0.4567 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.453 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3480 REMARK 3 ANGLE : 1.377 4963 REMARK 3 CHIRALITY : 0.058 551 REMARK 3 PLANARITY : 0.010 400 REMARK 3 DIHEDRAL : 30.507 898 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 12.0781 31.1982 22.4409 REMARK 3 T TENSOR REMARK 3 T11: 0.7251 T22: 0.3054 REMARK 3 T33: 0.6281 T12: 0.0331 REMARK 3 T13: 0.1261 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 1.1575 L22: 1.3634 REMARK 3 L33: 1.4118 L12: 0.2930 REMARK 3 L13: -0.3977 L23: -0.3410 REMARK 3 S TENSOR REMARK 3 S11: -0.1248 S12: 0.1713 S13: -0.0271 REMARK 3 S21: -0.3684 S22: 0.0808 S23: 0.1698 REMARK 3 S31: 0.1219 S32: -0.1060 S33: 0.0907 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97854 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45458 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KVO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM MALONATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.41200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 180 REMARK 465 ASP A 181 REMARK 465 PHE A 182 REMARK 465 MET A 183 REMARK 465 ASN A 184 REMARK 465 TYR A 185 REMARK 465 ASP A 186 REMARK 465 TRP A 187 REMARK 465 LYS A 188 REMARK 465 ASP A 189 REMARK 465 ILE A 190 REMARK 465 ASP A 191 REMARK 465 ASN A 192 REMARK 465 THR A 193 REMARK 465 ALA A 194 REMARK 465 CYS A 195 REMARK 465 THR A 196 REMARK 465 GLU A 197 REMARK 465 THR A 198 REMARK 465 GLN A 199 REMARK 465 PRO A 200 REMARK 465 GLN A 201 REMARK 465 VAL A 202 REMARK 465 GLY A 203 REMARK 465 PRO A 204 REMARK 465 ALA A 205 REMARK 465 ALA A 206 REMARK 465 GLN A 207 REMARK 465 SER A 208 REMARK 465 SER A 209 REMARK 465 VAL A 210 REMARK 465 ALA A 211 REMARK 465 VAL A 212 REMARK 465 HIS A 213 REMARK 465 GLN A 214 REMARK 465 SER A 215 REMARK 465 ALA A 216 REMARK 465 ALA A 217 REMARK 465 GLN A 218 REMARK 465 GLN A 219 REMARK 465 SER A 220 REMARK 465 VAL A 221 REMARK 465 SER A 222 REMARK 465 SER A 223 REMARK 465 GLN A 224 REMARK 465 SER A 225 REMARK 465 GLY A 226 REMARK 465 GLU A 227 REMARK 465 PRO A 228 REMARK 465 SER A 229 REMARK 465 ALA A 230 REMARK 465 VAL A 231 REMARK 465 ALA A 232 REMARK 465 ILE A 233 REMARK 465 PRO A 234 REMARK 465 SER A 235 REMARK 465 PRO A 236 REMARK 465 SER A 237 REMARK 465 GLY A 238 REMARK 465 ALA A 239 REMARK 465 SER A 240 REMARK 465 ASN A 241 REMARK 465 THR A 242 REMARK 465 SER A 243 REMARK 465 ASN A 244 REMARK 465 SER A 245 REMARK 465 LYS A 246 REMARK 465 GLU A 306 REMARK 465 LEU A 307 REMARK 465 SER A 308 REMARK 465 GLU A 309 REMARK 465 GLY A 310 REMARK 465 SER A 311 REMARK 465 SER A 312 REMARK 465 GLU A 313 REMARK 465 LEU A 314 REMARK 465 GLU A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 ASN B 180 REMARK 465 ASP B 181 REMARK 465 PHE B 182 REMARK 465 MET B 183 REMARK 465 ASN B 184 REMARK 465 TYR B 185 REMARK 465 ASP B 186 REMARK 465 TRP B 187 REMARK 465 LYS B 188 REMARK 465 ASP B 189 REMARK 465 ILE B 190 REMARK 465 ASP B 191 REMARK 465 ASN B 192 REMARK 465 THR B 193 REMARK 465 ALA B 194 REMARK 465 CYS B 195 REMARK 465 THR B 196 REMARK 465 GLU B 197 REMARK 465 THR B 198 REMARK 465 GLN B 199 REMARK 465 PRO B 200 REMARK 465 GLN B 201 REMARK 465 VAL B 202 REMARK 465 GLY B 203 REMARK 465 PRO B 204 REMARK 465 ALA B 205 REMARK 465 ALA B 206 REMARK 465 GLN B 207 REMARK 465 SER B 208 REMARK 465 SER B 209 REMARK 465 VAL B 210 REMARK 465 ALA B 211 REMARK 465 VAL B 212 REMARK 465 HIS B 213 REMARK 465 GLN B 214 REMARK 465 SER B 215 REMARK 465 ALA B 216 REMARK 465 ALA B 217 REMARK 465 GLN B 218 REMARK 465 GLN B 219 REMARK 465 SER B 220 REMARK 465 VAL B 221 REMARK 465 SER B 222 REMARK 465 SER B 223 REMARK 465 GLN B 224 REMARK 465 SER B 225 REMARK 465 GLY B 226 REMARK 465 GLU B 227 REMARK 465 PRO B 228 REMARK 465 SER B 229 REMARK 465 ALA B 230 REMARK 465 VAL B 231 REMARK 465 ALA B 232 REMARK 465 ILE B 233 REMARK 465 PRO B 234 REMARK 465 SER B 235 REMARK 465 PRO B 236 REMARK 465 SER B 237 REMARK 465 GLY B 238 REMARK 465 ALA B 239 REMARK 465 SER B 240 REMARK 465 ASN B 241 REMARK 465 THR B 242 REMARK 465 SER B 243 REMARK 465 ASN B 244 REMARK 465 SER B 245 REMARK 465 LYS B 246 REMARK 465 GLU B 306 REMARK 465 LEU B 307 REMARK 465 SER B 308 REMARK 465 GLU B 309 REMARK 465 GLY B 310 REMARK 465 SER B 311 REMARK 465 SER B 312 REMARK 465 GLU B 313 REMARK 465 LEU B 314 REMARK 465 GLU B 315 REMARK 465 HIS B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 465 HIS B 319 REMARK 465 HIS B 320 REMARK 465 HIS B 321 REMARK 465 HIS B 322 REMARK 465 HIS B 323 REMARK 465 ASN C 180 REMARK 465 ASP C 181 REMARK 465 PHE C 182 REMARK 465 MET C 183 REMARK 465 ASN C 184 REMARK 465 TYR C 185 REMARK 465 ASP C 186 REMARK 465 TRP C 187 REMARK 465 LYS C 188 REMARK 465 ASP C 189 REMARK 465 ILE C 190 REMARK 465 ASP C 191 REMARK 465 ASN C 192 REMARK 465 THR C 193 REMARK 465 ALA C 194 REMARK 465 CYS C 195 REMARK 465 THR C 196 REMARK 465 GLU C 197 REMARK 465 THR C 198 REMARK 465 GLN C 199 REMARK 465 PRO C 200 REMARK 465 GLN C 201 REMARK 465 VAL C 202 REMARK 465 GLY C 203 REMARK 465 PRO C 204 REMARK 465 ALA C 205 REMARK 465 ALA C 206 REMARK 465 GLN C 207 REMARK 465 SER C 208 REMARK 465 SER C 209 REMARK 465 VAL C 210 REMARK 465 ALA C 211 REMARK 465 VAL C 212 REMARK 465 HIS C 213 REMARK 465 GLN C 214 REMARK 465 SER C 215 REMARK 465 ALA C 216 REMARK 465 ALA C 217 REMARK 465 GLN C 218 REMARK 465 GLN C 219 REMARK 465 SER C 220 REMARK 465 VAL C 221 REMARK 465 SER C 222 REMARK 465 SER C 223 REMARK 465 GLN C 224 REMARK 465 SER C 225 REMARK 465 GLY C 226 REMARK 465 GLU C 227 REMARK 465 PRO C 228 REMARK 465 SER C 229 REMARK 465 ALA C 230 REMARK 465 VAL C 231 REMARK 465 ALA C 232 REMARK 465 ILE C 233 REMARK 465 PRO C 234 REMARK 465 SER C 235 REMARK 465 PRO C 236 REMARK 465 SER C 237 REMARK 465 GLY C 238 REMARK 465 ALA C 239 REMARK 465 SER C 240 REMARK 465 ASN C 241 REMARK 465 THR C 242 REMARK 465 SER C 243 REMARK 465 ASN C 244 REMARK 465 SER C 245 REMARK 465 LYS C 246 REMARK 465 GLU C 306 REMARK 465 LEU C 307 REMARK 465 SER C 308 REMARK 465 GLU C 309 REMARK 465 GLY C 310 REMARK 465 SER C 311 REMARK 465 SER C 312 REMARK 465 GLU C 313 REMARK 465 LEU C 314 REMARK 465 GLU C 315 REMARK 465 HIS C 316 REMARK 465 HIS C 317 REMARK 465 HIS C 318 REMARK 465 HIS C 319 REMARK 465 HIS C 320 REMARK 465 HIS C 321 REMARK 465 HIS C 322 REMARK 465 HIS C 323 REMARK 465 ASN D 180 REMARK 465 ASP D 181 REMARK 465 PHE D 182 REMARK 465 MET D 183 REMARK 465 ASN D 184 REMARK 465 TYR D 185 REMARK 465 ASP D 186 REMARK 465 TRP D 187 REMARK 465 LYS D 188 REMARK 465 ASP D 189 REMARK 465 ILE D 190 REMARK 465 ASP D 191 REMARK 465 ASN D 192 REMARK 465 THR D 193 REMARK 465 ALA D 194 REMARK 465 CYS D 195 REMARK 465 THR D 196 REMARK 465 GLU D 197 REMARK 465 THR D 198 REMARK 465 GLN D 199 REMARK 465 PRO D 200 REMARK 465 GLN D 201 REMARK 465 VAL D 202 REMARK 465 GLY D 203 REMARK 465 PRO D 204 REMARK 465 ALA D 205 REMARK 465 ALA D 206 REMARK 465 GLN D 207 REMARK 465 SER D 208 REMARK 465 SER D 209 REMARK 465 VAL D 210 REMARK 465 ALA D 211 REMARK 465 VAL D 212 REMARK 465 HIS D 213 REMARK 465 GLN D 214 REMARK 465 SER D 215 REMARK 465 ALA D 216 REMARK 465 ALA D 217 REMARK 465 GLN D 218 REMARK 465 GLN D 219 REMARK 465 SER D 220 REMARK 465 VAL D 221 REMARK 465 SER D 222 REMARK 465 SER D 223 REMARK 465 GLN D 224 REMARK 465 SER D 225 REMARK 465 GLY D 226 REMARK 465 GLU D 227 REMARK 465 PRO D 228 REMARK 465 SER D 229 REMARK 465 ALA D 230 REMARK 465 VAL D 231 REMARK 465 ALA D 232 REMARK 465 ILE D 233 REMARK 465 PRO D 234 REMARK 465 SER D 235 REMARK 465 PRO D 236 REMARK 465 SER D 237 REMARK 465 GLY D 238 REMARK 465 ALA D 239 REMARK 465 SER D 240 REMARK 465 ASN D 241 REMARK 465 THR D 242 REMARK 465 SER D 243 REMARK 465 ASN D 244 REMARK 465 SER D 245 REMARK 465 LYS D 246 REMARK 465 GLU D 309 REMARK 465 GLY D 310 REMARK 465 SER D 311 REMARK 465 SER D 312 REMARK 465 GLU D 313 REMARK 465 LEU D 314 REMARK 465 GLU D 315 REMARK 465 HIS D 316 REMARK 465 HIS D 317 REMARK 465 HIS D 318 REMARK 465 HIS D 319 REMARK 465 HIS D 320 REMARK 465 HIS D 321 REMARK 465 HIS D 322 REMARK 465 HIS D 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS A 279 NZ LYS D 279 2646 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG E 5 O3' DG E 5 C3' -0.056 REMARK 500 DA E 11 O3' DA E 11 C3' -0.060 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS D 279 CD - CE - NZ ANGL. DEV. = -23.1 DEGREES REMARK 500 LEU D 280 CB - CG - CD2 ANGL. DEV. = -11.6 DEGREES REMARK 500 DC F 13 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT G 4 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 250 113.10 -163.52 REMARK 500 THR A 252 155.35 -44.01 REMARK 500 ASP A 261 -53.68 -29.18 REMARK 500 THR D 252 122.57 -25.36 REMARK 500 LYS D 282 74.06 48.22 REMARK 500 REMARK 500 REMARK: NULL DBREF 7D3T A 180 313 UNP B8B5N8 PHR2_ORYSI 180 313 DBREF 7D3T B 180 313 UNP B8B5N8 PHR2_ORYSI 180 313 DBREF 7D3T C 180 313 UNP B8B5N8 PHR2_ORYSI 180 313 DBREF 7D3T D 180 313 UNP B8B5N8 PHR2_ORYSI 180 313 DBREF 7D3T E 1 16 PDB 7D3T 7D3T 1 16 DBREF 7D3T F 1 16 PDB 7D3T 7D3T 1 16 DBREF 7D3T G 1 16 PDB 7D3T 7D3T 1 16 DBREF 7D3T H 1 16 PDB 7D3T 7D3T 1 16 SEQADV 7D3T LEU A 314 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T GLU A 315 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS A 316 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS A 317 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS A 318 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS A 319 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS A 320 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS A 321 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS A 322 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS A 323 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T LEU B 314 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T GLU B 315 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS B 316 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS B 317 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS B 318 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS B 319 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS B 320 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS B 321 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS B 322 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS B 323 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T LEU C 314 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T GLU C 315 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS C 316 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS C 317 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS C 318 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS C 319 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS C 320 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS C 321 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS C 322 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS C 323 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T LEU D 314 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T GLU D 315 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS D 316 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS D 317 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS D 318 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS D 319 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS D 320 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS D 321 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS D 322 UNP B8B5N8 EXPRESSION TAG SEQADV 7D3T HIS D 323 UNP B8B5N8 EXPRESSION TAG SEQRES 1 A 144 ASN ASP PHE MET ASN TYR ASP TRP LYS ASP ILE ASP ASN SEQRES 2 A 144 THR ALA CYS THR GLU THR GLN PRO GLN VAL GLY PRO ALA SEQRES 3 A 144 ALA GLN SER SER VAL ALA VAL HIS GLN SER ALA ALA GLN SEQRES 4 A 144 GLN SER VAL SER SER GLN SER GLY GLU PRO SER ALA VAL SEQRES 5 A 144 ALA ILE PRO SER PRO SER GLY ALA SER ASN THR SER ASN SEQRES 6 A 144 SER LYS THR ARG MET ARG TRP THR PRO GLU LEU HIS GLU SEQRES 7 A 144 ARG PHE VAL ASP ALA VAL ASN LEU LEU GLY GLY SER GLU SEQRES 8 A 144 LYS ALA THR PRO LYS GLY VAL LEU LYS LEU MET LYS ALA SEQRES 9 A 144 ASP ASN LEU THR ILE TYR HIS VAL LYS SER HIS LEU GLN SEQRES 10 A 144 LYS TYR ARG THR ALA ARG TYR ARG PRO GLU LEU SER GLU SEQRES 11 A 144 GLY SER SER GLU LEU GLU HIS HIS HIS HIS HIS HIS HIS SEQRES 12 A 144 HIS SEQRES 1 B 144 ASN ASP PHE MET ASN TYR ASP TRP LYS ASP ILE ASP ASN SEQRES 2 B 144 THR ALA CYS THR GLU THR GLN PRO GLN VAL GLY PRO ALA SEQRES 3 B 144 ALA GLN SER SER VAL ALA VAL HIS GLN SER ALA ALA GLN SEQRES 4 B 144 GLN SER VAL SER SER GLN SER GLY GLU PRO SER ALA VAL SEQRES 5 B 144 ALA ILE PRO SER PRO SER GLY ALA SER ASN THR SER ASN SEQRES 6 B 144 SER LYS THR ARG MET ARG TRP THR PRO GLU LEU HIS GLU SEQRES 7 B 144 ARG PHE VAL ASP ALA VAL ASN LEU LEU GLY GLY SER GLU SEQRES 8 B 144 LYS ALA THR PRO LYS GLY VAL LEU LYS LEU MET LYS ALA SEQRES 9 B 144 ASP ASN LEU THR ILE TYR HIS VAL LYS SER HIS LEU GLN SEQRES 10 B 144 LYS TYR ARG THR ALA ARG TYR ARG PRO GLU LEU SER GLU SEQRES 11 B 144 GLY SER SER GLU LEU GLU HIS HIS HIS HIS HIS HIS HIS SEQRES 12 B 144 HIS SEQRES 1 C 144 ASN ASP PHE MET ASN TYR ASP TRP LYS ASP ILE ASP ASN SEQRES 2 C 144 THR ALA CYS THR GLU THR GLN PRO GLN VAL GLY PRO ALA SEQRES 3 C 144 ALA GLN SER SER VAL ALA VAL HIS GLN SER ALA ALA GLN SEQRES 4 C 144 GLN SER VAL SER SER GLN SER GLY GLU PRO SER ALA VAL SEQRES 5 C 144 ALA ILE PRO SER PRO SER GLY ALA SER ASN THR SER ASN SEQRES 6 C 144 SER LYS THR ARG MET ARG TRP THR PRO GLU LEU HIS GLU SEQRES 7 C 144 ARG PHE VAL ASP ALA VAL ASN LEU LEU GLY GLY SER GLU SEQRES 8 C 144 LYS ALA THR PRO LYS GLY VAL LEU LYS LEU MET LYS ALA SEQRES 9 C 144 ASP ASN LEU THR ILE TYR HIS VAL LYS SER HIS LEU GLN SEQRES 10 C 144 LYS TYR ARG THR ALA ARG TYR ARG PRO GLU LEU SER GLU SEQRES 11 C 144 GLY SER SER GLU LEU GLU HIS HIS HIS HIS HIS HIS HIS SEQRES 12 C 144 HIS SEQRES 1 D 144 ASN ASP PHE MET ASN TYR ASP TRP LYS ASP ILE ASP ASN SEQRES 2 D 144 THR ALA CYS THR GLU THR GLN PRO GLN VAL GLY PRO ALA SEQRES 3 D 144 ALA GLN SER SER VAL ALA VAL HIS GLN SER ALA ALA GLN SEQRES 4 D 144 GLN SER VAL SER SER GLN SER GLY GLU PRO SER ALA VAL SEQRES 5 D 144 ALA ILE PRO SER PRO SER GLY ALA SER ASN THR SER ASN SEQRES 6 D 144 SER LYS THR ARG MET ARG TRP THR PRO GLU LEU HIS GLU SEQRES 7 D 144 ARG PHE VAL ASP ALA VAL ASN LEU LEU GLY GLY SER GLU SEQRES 8 D 144 LYS ALA THR PRO LYS GLY VAL LEU LYS LEU MET LYS ALA SEQRES 9 D 144 ASP ASN LEU THR ILE TYR HIS VAL LYS SER HIS LEU GLN SEQRES 10 D 144 LYS TYR ARG THR ALA ARG TYR ARG PRO GLU LEU SER GLU SEQRES 11 D 144 GLY SER SER GLU LEU GLU HIS HIS HIS HIS HIS HIS HIS SEQRES 12 D 144 HIS SEQRES 1 E 16 DG DC DT DT DG DA DG DG DA DT DA DT DC SEQRES 2 E 16 DC DG DA SEQRES 1 F 16 DC DT DC DG DG DA DT DA DT DC DC DT DC SEQRES 2 F 16 DA DA DG SEQRES 1 G 16 DG DC DT DT DG DA DG DG DA DT DA DT DC SEQRES 2 G 16 DC DG DA SEQRES 1 H 16 DC DT DC DG DG DA DT DA DT DC DC DT DC SEQRES 2 H 16 DA DA DG FORMUL 9 HOH *9(H2 O) HELIX 1 AA1 THR A 252 LEU A 266 1 15 HELIX 2 AA2 GLY A 267 ALA A 272 1 6 HELIX 3 AA3 THR A 273 LYS A 282 1 10 HELIX 4 AA4 THR A 287 THR A 300 1 14 HELIX 5 AA5 THR B 252 LEU B 266 1 15 HELIX 6 AA6 THR B 273 LYS B 282 1 10 HELIX 7 AA7 THR B 287 THR B 300 1 14 HELIX 8 AA8 THR C 252 LEU C 266 1 15 HELIX 9 AA9 THR C 273 LEU C 280 1 8 HELIX 10 AB1 THR C 287 ALA C 301 1 15 HELIX 11 AB2 THR D 252 LEU D 266 1 15 HELIX 12 AB3 THR D 273 LYS D 282 1 10 HELIX 13 AB4 THR D 287 TYR D 298 1 12 HELIX 14 AB5 TYR D 303 LEU D 307 5 5 CRYST1 57.414 100.824 79.351 90.00 102.46 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017417 0.000000 0.003847 0.00000 SCALE2 0.000000 0.009918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012906 0.00000