data_7D5E # _entry.id 7D5E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7D5E pdb_00007d5e 10.2210/pdb7d5e/pdb WWPDB D_1300017853 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7D5E _pdbx_database_status.recvd_initial_deposition_date 2020-09-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Das, P.' 1 ? 'Maity, A.' 2 ? 'Ngo, K.H.' 3 ? 'Winnerdy, F.R.' 4 ? 'Bakalar, B.' 5 ? 'Mechulam, Y.' 6 ? 'Schmitt, E.' 7 ? 'Phan, A.T.' 8 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 49 _citation.language ? _citation.page_first 1724 _citation.page_last 1736 _citation.title 'Bulges in left-handed G-quadruplexes.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaa1259 _citation.pdbx_database_id_PubMed 33503265 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Das, P.' 1 ? primary 'Ngo, K.H.' 2 ? primary 'Winnerdy, F.R.' 3 ? primary 'Maity, A.' 4 ? primary 'Bakalar, B.' 5 ? primary 'Mechulam, Y.' 6 ? primary 'Schmitt, E.' 7 ? primary 'Phan, A.T.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 91.280 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7D5E _cell.details ? _cell.formula_units_Z ? _cell.length_a 29.100 _cell.length_a_esd ? _cell.length_b 39.810 _cell.length_b_esd ? _cell.length_c 54.970 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 2xBulge-LHG4motif 8872.649 2 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 7 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 4 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 208 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DG)(DT)(DG)(DT)(DG)(DT)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DG) (DG)(DT)(DG)(DG)(DT)(DG)(DT)(DT) ; _entity_poly.pdbx_seq_one_letter_code_can GGTGTGTGTGTGGTGTGGTGGTGGTGTT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DT n 1 4 DG n 1 5 DT n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DT n 1 10 DG n 1 11 DT n 1 12 DG n 1 13 DG n 1 14 DT n 1 15 DG n 1 16 DT n 1 17 DG n 1 18 DG n 1 19 DT n 1 20 DG n 1 21 DG n 1 22 DT n 1 23 DG n 1 24 DG n 1 25 DT n 1 26 DG n 1 27 DT n 1 28 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 28 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7D5E _struct_ref.pdbx_db_accession 7D5E _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7D5E A 1 ? 28 ? 7D5E 1 ? 28 ? 1 28 2 1 7D5E B 1 ? 28 ? 7D5E 1 ? 28 ? 1 28 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7D5E _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.79 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 31.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M potassium chloride, 0.04 M sodium cacodylate trihydrate pH 7.0, 60% v/v -2-methyl-2,4-pentanediol and 0.012 M spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-06-30 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate 11.81 _reflns.entry_id 7D5E _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.296 _reflns.d_resolution_low 29.0930 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 31051 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.67 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.0 _reflns.pdbx_Rmerge_I_obs 0.164 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.86 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.180 _reflns.pdbx_Rpim_I_all 0.073 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.296 _reflns_shell.d_res_low 1.342 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2861 _reflns_shell.percent_possible_all 90.68 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.203 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.345 _reflns_shell.pdbx_Rpim_I_all 0.589 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.732 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 110.110 _refine.B_iso_mean 17.2102 _refine.B_iso_min 8.660 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7D5E _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.2960 _refine.ls_d_res_low 29.0930 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 29721 _refine.ls_number_reflns_R_free 1433 _refine.ls_number_reflns_R_work 28288 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.6700 _refine.ls_percent_reflns_R_free 4.8200 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1853 _refine.ls_R_factor_R_free 0.2141 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1837 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4U5M _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.2600 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.2960 _refine_hist.d_res_low 29.0930 _refine_hist.number_atoms_solvent 208 _refine_hist.number_atoms_total 1450 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 56 _refine_hist.pdbx_B_iso_mean_ligand 35.14 _refine_hist.pdbx_B_iso_mean_solvent 26.78 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1178 _refine_hist.pdbx_number_atoms_ligand 64 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 1372 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.038 ? 2096 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.046 ? 222 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.012 ? 56 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 35.932 ? 596 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.2961 1.3424 . . 135 2707 91.0000 . . . 0.3539 0.0000 0.3202 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3424 1.3962 . . 141 2884 97.0000 . . . 0.3343 0.0000 0.2843 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3962 1.4597 . . 152 2904 97.0000 . . . 0.2863 0.0000 0.2636 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4597 1.5366 . . 123 2914 97.0000 . . . 0.3138 0.0000 0.2286 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5366 1.6329 . . 136 2819 96.0000 . . . 0.2692 0.0000 0.2047 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6329 1.7590 . . 146 2850 95.0000 . . . 0.2151 0.0000 0.1648 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7590 1.9360 . . 156 2830 95.0000 . . . 0.1905 0.0000 0.1643 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9360 2.2160 . . 162 2838 95.0000 . . . 0.2280 0.0000 0.1752 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2160 2.7916 . . 132 2795 93.0000 . . . 0.2367 0.0000 0.1829 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7916 29.0930 . . 150 2747 90.0000 . . . 0.1506 0.0000 0.1472 . . . . . . . . . . . # _struct.entry_id 7D5E _struct.title 'Left-handed G-quadruplex containing two bulges' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7D5E _struct_keywords.text 'G-quadruplex, Bulge, DNA, Left-handed' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 3 ? N N N 4 ? O N N 5 ? P N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 E K . K ? ? A DG 1 A K 103 1_555 ? ? ? ? ? ? ? 2.911 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? A DG 2 A K 101 1_555 ? ? ? ? ? ? ? 2.832 ? ? metalc3 metalc ? ? A DG 2 O6 ? ? ? 1_555 E K . K ? ? A DG 2 A K 103 1_555 ? ? ? ? ? ? ? 2.811 ? ? metalc4 metalc ? ? A DG 4 O6 ? ? ? 1_555 E K . K ? ? A DG 4 A K 103 1_555 ? ? ? ? ? ? ? 2.692 ? ? metalc5 metalc ? ? A DG 6 O6 ? ? ? 1_555 C K . K ? ? A DG 6 A K 101 1_555 ? ? ? ? ? ? ? 2.836 ? ? metalc6 metalc ? ? A DG 6 O6 ? ? ? 1_555 E K . K ? ? A DG 6 A K 103 1_555 ? ? ? ? ? ? ? 2.981 ? ? metalc7 metalc ? ? A DG 8 O6 ? ? ? 1_555 E K . K ? ? A DG 8 A K 103 1_555 ? ? ? ? ? ? ? 2.740 ? ? metalc8 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 101 1_555 ? ? ? ? ? ? ? 2.790 ? ? metalc9 metalc ? ? A DG 10 O6 ? ? ? 1_555 E K . K ? ? A DG 10 A K 103 1_555 ? ? ? ? ? ? ? 2.888 ? ? metalc10 metalc ? ? A DG 12 O6 ? ? ? 1_555 E K . K ? ? A DG 12 A K 103 1_555 ? ? ? ? ? ? ? 2.836 ? ? metalc11 metalc ? ? A DG 13 O6 ? ? ? 1_555 C K . K ? ? A DG 13 A K 101 1_555 ? ? ? ? ? ? ? 2.836 ? ? metalc12 metalc ? ? A DG 13 O6 ? ? ? 1_555 E K . K ? ? A DG 13 A K 103 1_555 ? ? ? ? ? ? ? 2.824 ? ? metalc13 metalc ? ? A DG 15 O6 ? ? ? 1_555 C K . K ? ? A DG 15 A K 101 1_555 ? ? ? ? ? ? ? 2.760 ? ? metalc14 metalc ? ? A DG 15 O6 ? ? ? 1_555 D K . K ? ? A DG 15 A K 102 1_555 ? ? ? ? ? ? ? 2.803 ? ? metalc15 metalc ? ? A DG 17 O6 ? ? ? 1_555 D K . K ? ? A DG 17 A K 102 1_555 ? ? ? ? ? ? ? 2.938 ? ? metalc16 metalc ? ? A DG 18 O6 ? ? ? 1_555 C K . K ? ? A DG 18 A K 101 1_555 ? ? ? ? ? ? ? 2.867 ? ? metalc17 metalc ? ? A DG 18 O6 ? ? ? 1_555 D K . K ? ? A DG 18 A K 102 1_555 ? ? ? ? ? ? ? 2.889 ? ? metalc18 metalc ? ? A DG 20 O6 ? ? ? 1_555 D K . K ? ? A DG 20 A K 102 1_555 ? ? ? ? ? ? ? 2.818 ? ? metalc19 metalc ? ? A DG 21 O6 ? ? ? 1_555 C K . K ? ? A DG 21 A K 101 1_555 ? ? ? ? ? ? ? 2.795 ? ? metalc20 metalc ? ? A DG 21 O6 ? ? ? 1_555 D K . K ? ? A DG 21 A K 102 1_555 ? ? ? ? ? ? ? 2.982 ? ? metalc21 metalc ? ? A DG 23 O6 ? ? ? 1_555 D K . K ? ? A DG 23 A K 102 1_555 ? ? ? ? ? ? ? 2.781 ? ? metalc22 metalc ? ? A DG 24 O6 ? ? ? 1_555 C K . K ? ? A DG 24 A K 101 1_555 ? ? ? ? ? ? ? 2.854 ? ? metalc23 metalc ? ? A DG 24 O6 ? ? ? 1_555 D K . K ? ? A DG 24 A K 102 1_555 ? ? ? ? ? ? ? 2.955 ? ? metalc24 metalc ? ? A DG 26 O6 ? ? ? 1_555 D K . K ? ? A DG 26 A K 102 1_555 ? ? ? ? ? ? ? 2.722 ? ? metalc25 metalc ? ? O HOH . O ? ? ? 1_455 N NA . NA ? ? A HOH 239 B NA 107 1_555 ? ? ? ? ? ? ? 2.853 ? ? metalc26 metalc ? ? O HOH . O ? ? ? 2_547 N NA . NA ? ? A HOH 272 B NA 107 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc27 metalc ? ? B DG 1 O6 ? ? ? 1_555 J K . K ? ? B DG 1 B K 103 1_555 ? ? ? ? ? ? ? 2.823 ? ? metalc28 metalc ? ? B DG 2 O6 ? ? ? 1_555 H K . K ? ? B DG 2 B K 101 1_555 ? ? ? ? ? ? ? 2.804 ? ? metalc29 metalc ? ? B DG 2 O6 ? ? ? 1_555 J K . K ? ? B DG 2 B K 103 1_555 ? ? ? ? ? ? ? 2.881 ? ? metalc30 metalc ? ? B DG 4 O6 ? ? ? 1_555 J K . K ? ? B DG 4 B K 103 1_555 ? ? ? ? ? ? ? 2.664 ? ? metalc31 metalc ? ? B DG 6 O6 ? ? ? 1_555 H K . K ? ? B DG 6 B K 101 1_555 ? ? ? ? ? ? ? 2.849 ? ? metalc32 metalc ? ? B DG 6 O6 ? ? ? 1_555 J K . K ? ? B DG 6 B K 103 1_555 ? ? ? ? ? ? ? 2.989 ? ? metalc33 metalc ? ? B DG 8 O6 ? ? ? 1_555 J K . K ? ? B DG 8 B K 103 1_555 ? ? ? ? ? ? ? 2.725 ? ? metalc34 metalc ? ? B DT 9 "O5'" ? ? ? 1_555 N NA . NA ? ? B DT 9 B NA 107 1_555 ? ? ? ? ? ? ? 3.125 ? ? metalc35 metalc ? ? B DT 9 "O4'" ? ? ? 1_555 N NA . NA ? ? B DT 9 B NA 107 1_555 ? ? ? ? ? ? ? 2.733 ? ? metalc36 metalc ? ? B DT 9 O2 ? ? ? 1_555 N NA . NA ? ? B DT 9 B NA 107 1_555 ? ? ? ? ? ? ? 3.078 ? ? metalc37 metalc ? ? B DG 10 O6 ? ? ? 1_555 H K . K ? ? B DG 10 B K 101 1_555 ? ? ? ? ? ? ? 2.769 ? ? metalc38 metalc ? ? B DG 10 O6 ? ? ? 1_555 J K . K ? ? B DG 10 B K 103 1_555 ? ? ? ? ? ? ? 2.894 ? ? metalc39 metalc ? ? B DG 12 O6 ? ? ? 1_555 J K . K ? ? B DG 12 B K 103 1_555 ? ? ? ? ? ? ? 2.776 ? ? metalc40 metalc ? ? B DG 13 O6 ? ? ? 1_555 H K . K ? ? B DG 13 B K 101 1_555 ? ? ? ? ? ? ? 2.884 ? ? metalc41 metalc ? ? B DG 13 O6 ? ? ? 1_555 J K . K ? ? B DG 13 B K 103 1_555 ? ? ? ? ? ? ? 2.875 ? ? metalc42 metalc ? ? B DG 15 O6 ? ? ? 1_555 H K . K ? ? B DG 15 B K 101 1_555 ? ? ? ? ? ? ? 2.769 ? ? metalc43 metalc ? ? B DG 15 O6 ? ? ? 1_555 I K . K ? ? B DG 15 B K 102 1_555 ? ? ? ? ? ? ? 2.737 ? ? metalc44 metalc ? ? B DG 17 O6 ? ? ? 1_555 I K . K ? ? B DG 17 B K 102 1_555 ? ? ? ? ? ? ? 2.906 ? ? metalc45 metalc ? ? B DG 18 O6 ? ? ? 1_555 H K . K ? ? B DG 18 B K 101 1_555 ? ? ? ? ? ? ? 2.933 ? ? metalc46 metalc ? ? B DG 18 O6 ? ? ? 1_555 I K . K ? ? B DG 18 B K 102 1_555 ? ? ? ? ? ? ? 2.852 ? ? metalc47 metalc ? ? B DG 20 O6 ? ? ? 1_555 I K . K ? ? B DG 20 B K 102 1_555 ? ? ? ? ? ? ? 2.871 ? ? metalc48 metalc ? ? B DG 21 O6 ? ? ? 1_555 H K . K ? ? B DG 21 B K 101 1_555 ? ? ? ? ? ? ? 2.835 ? ? metalc49 metalc ? ? B DG 21 O6 ? ? ? 1_555 I K . K ? ? B DG 21 B K 102 1_555 ? ? ? ? ? ? ? 2.955 ? ? metalc50 metalc ? ? B DG 23 O6 ? ? ? 1_555 I K . K ? ? B DG 23 B K 102 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc51 metalc ? ? B DG 24 O6 ? ? ? 1_555 H K . K ? ? B DG 24 B K 101 1_555 ? ? ? ? ? ? ? 2.866 ? ? metalc52 metalc ? ? B DG 24 O6 ? ? ? 1_555 I K . K ? ? B DG 24 B K 102 1_555 ? ? ? ? ? ? ? 2.947 ? ? metalc53 metalc ? ? B DG 26 O6 ? ? ? 1_555 I K . K ? ? B DG 26 B K 102 1_555 ? ? ? ? ? ? ? 2.800 ? ? metalc54 metalc ? ? K K . K ? ? ? 1_555 P HOH . O ? ? B K 104 B HOH 244 2_556 ? ? ? ? ? ? ? 2.958 ? ? metalc55 metalc ? ? K K . K ? ? ? 1_555 P HOH . O ? ? B K 104 B HOH 260 1_655 ? ? ? ? ? ? ? 3.197 ? ? metalc56 metalc ? ? K K . K ? ? ? 1_555 P HOH . O ? ? B K 104 B HOH 269 1_555 ? ? ? ? ? ? ? 3.098 ? ? metalc57 metalc ? ? N NA . NA ? ? ? 1_555 P HOH . O ? ? B NA 107 B HOH 207 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc58 metalc ? ? N NA . NA ? ? ? 1_555 P HOH . O ? ? B NA 107 B HOH 235 1_555 ? ? ? ? ? ? ? 2.946 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 4 O6 ? ? A DG 1 A DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 4 N7 ? ? A DG 1 A DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 12 N2 ? ? A DG 1 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 12 N1 ? ? A DG 1 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 6 O6 ? ? A DG 2 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 6 N7 ? ? A DG 2 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 13 N2 ? ? A DG 2 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 13 N1 ? ? A DG 2 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 12 O6 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 12 N7 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 10 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 10 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 15 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 15 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 15 N7 ? ? ? 1_555 A DG 24 N2 ? ? A DG 15 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DG 24 N1 ? ? A DG 15 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 17 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 17 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 17 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 17 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 17 N7 ? ? ? 1_555 A DG 26 N2 ? ? A DG 17 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 17 O6 ? ? ? 1_555 A DG 26 N1 ? ? A DG 17 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 18 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 18 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 18 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 18 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 20 N1 ? ? ? 1_555 A DG 23 O6 ? ? A DG 20 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 20 N2 ? ? ? 1_555 A DG 23 N7 ? ? A DG 20 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 21 N1 ? ? ? 1_555 A DG 24 O6 ? ? A DG 21 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 21 N2 ? ? ? 1_555 A DG 24 N7 ? ? A DG 21 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 23 N1 ? ? ? 1_555 A DG 26 O6 ? ? A DG 23 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 23 N2 ? ? ? 1_555 A DG 26 N7 ? ? A DG 23 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? B DG 1 N1 ? ? ? 1_555 B DG 4 O6 ? ? B DG 1 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? B DG 1 N2 ? ? ? 1_555 B DG 4 N7 ? ? B DG 1 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? B DG 1 N7 ? ? ? 1_555 B DG 12 N2 ? ? B DG 1 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DG 12 N1 ? ? B DG 1 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DG 6 O6 ? ? B DG 2 B DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DG 6 N7 ? ? B DG 2 B DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? B DG 2 N7 ? ? ? 1_555 B DG 13 N2 ? ? B DG 2 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? B DG 2 O6 ? ? ? 1_555 B DG 13 N1 ? ? B DG 2 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DG 8 O6 ? ? B DG 4 B DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DG 8 N7 ? ? B DG 4 B DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog43 hydrog ? ? B DG 6 N1 ? ? ? 1_555 B DG 10 O6 ? ? B DG 6 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? B DG 6 N2 ? ? ? 1_555 B DG 10 N7 ? ? B DG 6 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog45 hydrog ? ? B DG 8 N1 ? ? ? 1_555 B DG 12 O6 ? ? B DG 8 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog46 hydrog ? ? B DG 8 N2 ? ? ? 1_555 B DG 12 N7 ? ? B DG 8 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog47 hydrog ? ? B DG 10 N1 ? ? ? 1_555 B DG 13 O6 ? ? B DG 10 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog48 hydrog ? ? B DG 10 N2 ? ? ? 1_555 B DG 13 N7 ? ? B DG 10 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog49 hydrog ? ? B DG 15 N1 ? ? ? 1_555 B DG 18 O6 ? ? B DG 15 B DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog50 hydrog ? ? B DG 15 N2 ? ? ? 1_555 B DG 18 N7 ? ? B DG 15 B DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog51 hydrog ? ? B DG 15 N7 ? ? ? 1_555 B DG 24 N2 ? ? B DG 15 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog52 hydrog ? ? B DG 15 O6 ? ? ? 1_555 B DG 24 N1 ? ? B DG 15 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog53 hydrog ? ? B DG 17 N1 ? ? ? 1_555 B DG 20 O6 ? ? B DG 17 B DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog54 hydrog ? ? B DG 17 N2 ? ? ? 1_555 B DG 20 N7 ? ? B DG 17 B DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog55 hydrog ? ? B DG 17 N7 ? ? ? 1_555 B DG 26 N2 ? ? B DG 17 B DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog56 hydrog ? ? B DG 17 O6 ? ? ? 1_555 B DG 26 N1 ? ? B DG 17 B DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog57 hydrog ? ? B DG 18 N1 ? ? ? 1_555 B DG 21 O6 ? ? B DG 18 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog58 hydrog ? ? B DG 18 N2 ? ? ? 1_555 B DG 21 N7 ? ? B DG 18 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog59 hydrog ? ? B DG 20 N1 ? ? ? 1_555 B DG 23 O6 ? ? B DG 20 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog60 hydrog ? ? B DG 20 N2 ? ? ? 1_555 B DG 23 N7 ? ? B DG 20 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog61 hydrog ? ? B DG 21 N1 ? ? ? 1_555 B DG 24 O6 ? ? B DG 21 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog62 hydrog ? ? B DG 21 N2 ? ? ? 1_555 B DG 24 N7 ? ? B DG 21 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog63 hydrog ? ? B DG 23 N1 ? ? ? 1_555 B DG 26 O6 ? ? B DG 23 B DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog64 hydrog ? ? B DG 23 N2 ? ? ? 1_555 B DG 26 N7 ? ? B DG 23 B DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 7D5E _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.034364 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000771 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025119 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018196 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C K N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DT 16 16 16 DT DT A . n A 1 17 DG 17 17 17 DG DG A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DT 19 19 19 DT DT A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DT 22 22 22 DT DT A . n A 1 23 DG 23 23 23 DG DG A . n A 1 24 DG 24 24 24 DG DG A . n A 1 25 DT 25 25 25 DT DT A . n A 1 26 DG 26 26 26 DG DG A . n A 1 27 DT 27 27 27 DT DT A . n A 1 28 DT 28 28 28 DT DT A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DT 3 3 3 DT DT B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DT 5 5 5 DT DT B . n B 1 6 DG 6 6 6 DG DG B . n B 1 7 DT 7 7 7 DT DT B . n B 1 8 DG 8 8 8 DG DG B . n B 1 9 DT 9 9 9 DT DT B . n B 1 10 DG 10 10 10 DG DG B . n B 1 11 DT 11 11 11 DT DT B . n B 1 12 DG 12 12 12 DG DG B . n B 1 13 DG 13 13 13 DG DG B . n B 1 14 DT 14 14 14 DT DT B . n B 1 15 DG 15 15 15 DG DG B . n B 1 16 DT 16 16 16 DT DT B . n B 1 17 DG 17 17 17 DG DG B . n B 1 18 DG 18 18 18 DG DG B . n B 1 19 DT 19 19 19 DT DT B . n B 1 20 DG 20 20 20 DG DG B . n B 1 21 DG 21 21 21 DG DG B . n B 1 22 DT 22 22 22 DT DT B . n B 1 23 DG 23 23 23 DG DG B . n B 1 24 DG 24 24 24 DG DG B . n B 1 25 DT 25 25 25 DT DT B . n B 1 26 DG 26 26 26 DG DG B . n B 1 27 DT 27 27 27 DT DT B . n B 1 28 DT 28 28 28 DT DT B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 101 41 K K A . D 2 K 1 102 42 K K A . E 2 K 1 103 43 K K A . F 3 SPM 1 104 4 SPM SPM A . G 3 SPM 1 105 1 SPM SPM A . H 2 K 1 101 41 K K B . I 2 K 1 102 42 K K B . J 2 K 1 103 43 K K B . K 2 K 1 104 44 K K B . L 3 SPM 1 105 2 SPM SPM B . M 3 SPM 1 106 3 SPM SPM B . N 4 NA 1 107 1 NA NA B . O 5 HOH 1 201 261 HOH HOH A . O 5 HOH 2 202 53 HOH HOH A . O 5 HOH 3 203 282 HOH HOH A . O 5 HOH 4 204 79 HOH HOH A . O 5 HOH 5 205 164 HOH HOH A . O 5 HOH 6 206 44 HOH HOH A . O 5 HOH 7 207 99 HOH HOH A . O 5 HOH 8 208 38 HOH HOH A . O 5 HOH 9 209 55 HOH HOH A . O 5 HOH 10 210 64 HOH HOH A . O 5 HOH 11 211 140 HOH HOH A . O 5 HOH 12 212 132 HOH HOH A . O 5 HOH 13 213 161 HOH HOH A . O 5 HOH 14 214 33 HOH HOH A . O 5 HOH 15 215 5 HOH HOH A . O 5 HOH 16 216 248 HOH HOH A . O 5 HOH 17 217 40 HOH HOH A . O 5 HOH 18 218 174 HOH HOH A . O 5 HOH 19 219 27 HOH HOH A . O 5 HOH 20 220 100 HOH HOH A . O 5 HOH 21 221 158 HOH HOH A . O 5 HOH 22 222 77 HOH HOH A . O 5 HOH 23 223 168 HOH HOH A . O 5 HOH 24 224 184 HOH HOH A . O 5 HOH 25 225 242 HOH HOH A . O 5 HOH 26 226 130 HOH HOH A . O 5 HOH 27 227 197 HOH HOH A . O 5 HOH 28 228 13 HOH HOH A . O 5 HOH 29 229 110 HOH HOH A . O 5 HOH 30 230 25 HOH HOH A . O 5 HOH 31 231 82 HOH HOH A . O 5 HOH 32 232 47 HOH HOH A . O 5 HOH 33 233 162 HOH HOH A . O 5 HOH 34 234 175 HOH HOH A . O 5 HOH 35 235 195 HOH HOH A . O 5 HOH 36 236 141 HOH HOH A . O 5 HOH 37 237 113 HOH HOH A . O 5 HOH 38 238 109 HOH HOH A . O 5 HOH 39 239 286 HOH HOH A . O 5 HOH 40 240 204 HOH HOH A . O 5 HOH 41 241 88 HOH HOH A . O 5 HOH 42 242 35 HOH HOH A . O 5 HOH 43 243 156 HOH HOH A . O 5 HOH 44 244 215 HOH HOH A . O 5 HOH 45 245 48 HOH HOH A . O 5 HOH 46 246 84 HOH HOH A . O 5 HOH 47 247 257 HOH HOH A . O 5 HOH 48 248 260 HOH HOH A . O 5 HOH 49 249 285 HOH HOH A . O 5 HOH 50 250 62 HOH HOH A . O 5 HOH 51 251 4 HOH HOH A . O 5 HOH 52 252 29 HOH HOH A . O 5 HOH 53 253 256 HOH HOH A . O 5 HOH 54 254 103 HOH HOH A . O 5 HOH 55 255 147 HOH HOH A . O 5 HOH 56 256 31 HOH HOH A . O 5 HOH 57 257 89 HOH HOH A . O 5 HOH 58 258 262 HOH HOH A . O 5 HOH 59 259 17 HOH HOH A . O 5 HOH 60 260 186 HOH HOH A . O 5 HOH 61 261 61 HOH HOH A . O 5 HOH 62 262 253 HOH HOH A . O 5 HOH 63 263 251 HOH HOH A . O 5 HOH 64 264 12 HOH HOH A . O 5 HOH 65 265 263 HOH HOH A . O 5 HOH 66 266 188 HOH HOH A . O 5 HOH 67 267 18 HOH HOH A . O 5 HOH 68 268 51 HOH HOH A . O 5 HOH 69 269 250 HOH HOH A . O 5 HOH 70 270 276 HOH HOH A . O 5 HOH 71 271 14 HOH HOH A . O 5 HOH 72 272 49 HOH HOH A . O 5 HOH 73 273 187 HOH HOH A . O 5 HOH 74 274 123 HOH HOH A . O 5 HOH 75 275 23 HOH HOH A . O 5 HOH 76 276 85 HOH HOH A . O 5 HOH 77 277 67 HOH HOH A . O 5 HOH 78 278 9 HOH HOH A . O 5 HOH 79 279 70 HOH HOH A . O 5 HOH 80 280 93 HOH HOH A . O 5 HOH 81 281 189 HOH HOH A . O 5 HOH 82 282 30 HOH HOH A . O 5 HOH 83 283 284 HOH HOH A . O 5 HOH 84 284 176 HOH HOH A . O 5 HOH 85 285 225 HOH HOH A . O 5 HOH 86 286 111 HOH HOH A . O 5 HOH 87 287 114 HOH HOH A . O 5 HOH 88 288 180 HOH HOH A . O 5 HOH 89 289 157 HOH HOH A . O 5 HOH 90 290 36 HOH HOH A . O 5 HOH 91 291 179 HOH HOH A . O 5 HOH 92 292 241 HOH HOH A . O 5 HOH 93 293 252 HOH HOH A . O 5 HOH 94 294 177 HOH HOH A . O 5 HOH 95 295 117 HOH HOH A . O 5 HOH 96 296 151 HOH HOH A . O 5 HOH 97 297 264 HOH HOH A . O 5 HOH 98 298 271 HOH HOH A . O 5 HOH 99 299 169 HOH HOH A . P 5 HOH 1 201 94 HOH HOH B . P 5 HOH 2 202 136 HOH HOH B . P 5 HOH 3 203 98 HOH HOH B . P 5 HOH 4 204 274 HOH HOH B . P 5 HOH 5 205 69 HOH HOH B . P 5 HOH 6 206 73 HOH HOH B . P 5 HOH 7 207 56 HOH HOH B . P 5 HOH 8 208 206 HOH HOH B . P 5 HOH 9 209 281 HOH HOH B . P 5 HOH 10 210 212 HOH HOH B . P 5 HOH 11 211 15 HOH HOH B . P 5 HOH 12 212 230 HOH HOH B . P 5 HOH 13 213 91 HOH HOH B . P 5 HOH 14 214 178 HOH HOH B . P 5 HOH 15 215 129 HOH HOH B . P 5 HOH 16 216 135 HOH HOH B . P 5 HOH 17 217 124 HOH HOH B . P 5 HOH 18 218 185 HOH HOH B . P 5 HOH 19 219 65 HOH HOH B . P 5 HOH 20 220 160 HOH HOH B . P 5 HOH 21 221 237 HOH HOH B . P 5 HOH 22 222 37 HOH HOH B . P 5 HOH 23 223 78 HOH HOH B . P 5 HOH 24 224 112 HOH HOH B . P 5 HOH 25 225 66 HOH HOH B . P 5 HOH 26 226 54 HOH HOH B . P 5 HOH 27 227 234 HOH HOH B . P 5 HOH 28 228 3 HOH HOH B . P 5 HOH 29 229 97 HOH HOH B . P 5 HOH 30 230 142 HOH HOH B . P 5 HOH 31 231 258 HOH HOH B . P 5 HOH 32 232 19 HOH HOH B . P 5 HOH 33 233 24 HOH HOH B . P 5 HOH 34 234 173 HOH HOH B . P 5 HOH 35 235 71 HOH HOH B . P 5 HOH 36 236 235 HOH HOH B . P 5 HOH 37 237 115 HOH HOH B . P 5 HOH 38 238 52 HOH HOH B . P 5 HOH 39 239 266 HOH HOH B . P 5 HOH 40 240 34 HOH HOH B . P 5 HOH 41 241 240 HOH HOH B . P 5 HOH 42 242 90 HOH HOH B . P 5 HOH 43 243 134 HOH HOH B . P 5 HOH 44 244 57 HOH HOH B . P 5 HOH 45 245 259 HOH HOH B . P 5 HOH 46 246 2 HOH HOH B . P 5 HOH 47 247 39 HOH HOH B . P 5 HOH 48 248 232 HOH HOH B . P 5 HOH 49 249 128 HOH HOH B . P 5 HOH 50 250 122 HOH HOH B . P 5 HOH 51 251 181 HOH HOH B . P 5 HOH 52 252 7 HOH HOH B . P 5 HOH 53 253 268 HOH HOH B . P 5 HOH 54 254 28 HOH HOH B . P 5 HOH 55 255 32 HOH HOH B . P 5 HOH 56 256 125 HOH HOH B . P 5 HOH 57 257 80 HOH HOH B . P 5 HOH 58 258 279 HOH HOH B . P 5 HOH 59 259 59 HOH HOH B . P 5 HOH 60 260 8 HOH HOH B . P 5 HOH 61 261 102 HOH HOH B . P 5 HOH 62 262 46 HOH HOH B . P 5 HOH 63 263 280 HOH HOH B . P 5 HOH 64 264 16 HOH HOH B . P 5 HOH 65 265 121 HOH HOH B . P 5 HOH 66 266 96 HOH HOH B . P 5 HOH 67 267 76 HOH HOH B . P 5 HOH 68 268 127 HOH HOH B . P 5 HOH 69 269 290 HOH HOH B . P 5 HOH 70 270 200 HOH HOH B . P 5 HOH 71 271 86 HOH HOH B . P 5 HOH 72 272 294 HOH HOH B . P 5 HOH 73 273 83 HOH HOH B . P 5 HOH 74 274 41 HOH HOH B . P 5 HOH 75 275 145 HOH HOH B . P 5 HOH 76 276 6 HOH HOH B . P 5 HOH 77 277 267 HOH HOH B . P 5 HOH 78 278 239 HOH HOH B . P 5 HOH 79 279 43 HOH HOH B . P 5 HOH 80 280 244 HOH HOH B . P 5 HOH 81 281 292 HOH HOH B . P 5 HOH 82 282 243 HOH HOH B . P 5 HOH 83 283 170 HOH HOH B . P 5 HOH 84 284 22 HOH HOH B . P 5 HOH 85 285 269 HOH HOH B . P 5 HOH 86 286 26 HOH HOH B . P 5 HOH 87 287 172 HOH HOH B . P 5 HOH 88 288 293 HOH HOH B . P 5 HOH 89 289 233 HOH HOH B . P 5 HOH 90 290 236 HOH HOH B . P 5 HOH 91 291 68 HOH HOH B . P 5 HOH 92 292 126 HOH HOH B . P 5 HOH 93 293 74 HOH HOH B . P 5 HOH 94 294 118 HOH HOH B . P 5 HOH 95 295 295 HOH HOH B . P 5 HOH 96 296 20 HOH HOH B . P 5 HOH 97 297 119 HOH HOH B . P 5 HOH 98 298 154 HOH HOH B . P 5 HOH 99 299 81 HOH HOH B . P 5 HOH 100 300 150 HOH HOH B . P 5 HOH 101 301 92 HOH HOH B . P 5 HOH 102 302 153 HOH HOH B . P 5 HOH 103 303 146 HOH HOH B . P 5 HOH 104 304 287 HOH HOH B . P 5 HOH 105 305 50 HOH HOH B . P 5 HOH 106 306 101 HOH HOH B . P 5 HOH 107 307 120 HOH HOH B . P 5 HOH 108 308 42 HOH HOH B . P 5 HOH 109 309 166 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,O 2 1 B,H,I,J,K,L,M,N,P # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 4250 ? 2 'ABSA (A^2)' 120 ? 2 MORE -9 ? 2 'SSA (A^2)' 4220 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 1_555 84.4 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 72.1 ? 3 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 86.5 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 136.5 ? 5 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 66.5 ? 6 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 74.4 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 108.0 ? 8 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 152.3 ? 9 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 74.6 ? 10 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 88.6 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 156.7 ? 12 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 102.2 ? 13 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 130.1 ? 14 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 65.3 ? 15 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 76.4 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 68.9 ? 17 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 135.8 ? 18 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 115.7 ? 19 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 153.1 ? 20 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 71.7 ? 21 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 91.8 ? 22 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 95.5 ? 23 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 68.9 ? 24 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 153.6 ? 25 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 102.7 ? 26 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 131.8 ? 27 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 67.1 ? 28 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 79.0 ? 29 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 68.3 ? 30 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 104.2 ? 31 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 68.5 ? 32 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 68.4 ? 33 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 106.2 ? 34 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 68.2 ? 35 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 91.4 ? 36 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 153.1 ? 37 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 136.2 ? 38 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 80.7 ? 39 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 152.1 ? 40 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 137.2 ? 41 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 82.0 ? 42 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 89.7 ? 43 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 67.3 ? 44 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 139.1 ? 45 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 82.8 ? 46 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 90.5 ? 47 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 150.6 ? 48 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 104.1 ? 49 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 66.7 ? 50 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 82.0 ? 51 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 91.3 ? 52 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 153.9 ? 53 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 135.9 ? 54 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 67.6 ? 55 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 104.6 ? 56 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 70.0 ? 57 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 97.4 ? 58 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 66.4 ? 59 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 83.2 ? 60 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 156.6 ? 61 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 68.7 ? 62 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 92.5 ? 63 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 98.4 ? 64 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 133.4 ? 65 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 64.0 ? 66 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 80.1 ? 67 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 132.1 ? 68 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 106.8 ? 69 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 155.1 ? 70 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 71.2 ? 71 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 94.0 ? 72 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 65.7 ? 73 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 157.8 ? 74 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 101.5 ? 75 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 131.9 ? 76 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 66.2 ? 77 O6 ? A DG 23 ? A DG 23 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 77.9 ? 78 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 75.8 ? 79 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 71.9 ? 80 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 131.1 ? 81 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 115.0 ? 82 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 154.7 ? 83 O6 ? A DG 23 ? A DG 23 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 73.7 ? 84 O6 ? A DG 24 ? A DG 24 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 26 ? A DG 26 ? 1_555 89.3 ? 85 O ? O HOH . ? A HOH 239 ? 1_455 NA ? N NA . ? B NA 107 ? 1_555 O ? O HOH . ? A HOH 272 ? 2_547 108.4 ? 86 O ? O HOH . ? A HOH 239 ? 1_455 NA ? N NA . ? B NA 107 ? 1_555 "O5'" ? B DT 9 ? B DT 9 ? 1_555 153.0 ? 87 O ? O HOH . ? A HOH 272 ? 2_547 NA ? N NA . ? B NA 107 ? 1_555 "O5'" ? B DT 9 ? B DT 9 ? 1_555 75.0 ? 88 O ? O HOH . ? A HOH 239 ? 1_455 NA ? N NA . ? B NA 107 ? 1_555 "O4'" ? B DT 9 ? B DT 9 ? 1_555 150.5 ? 89 O ? O HOH . ? A HOH 272 ? 2_547 NA ? N NA . ? B NA 107 ? 1_555 "O4'" ? B DT 9 ? B DT 9 ? 1_555 77.1 ? 90 "O5'" ? B DT 9 ? B DT 9 ? 1_555 NA ? N NA . ? B NA 107 ? 1_555 "O4'" ? B DT 9 ? B DT 9 ? 1_555 56.4 ? 91 O ? O HOH . ? A HOH 239 ? 1_455 NA ? N NA . ? B NA 107 ? 1_555 O2 ? B DT 9 ? B DT 9 ? 1_555 86.9 ? 92 O ? O HOH . ? A HOH 272 ? 2_547 NA ? N NA . ? B NA 107 ? 1_555 O2 ? B DT 9 ? B DT 9 ? 1_555 77.2 ? 93 "O5'" ? B DT 9 ? B DT 9 ? 1_555 NA ? N NA . ? B NA 107 ? 1_555 O2 ? B DT 9 ? B DT 9 ? 1_555 119.5 ? 94 "O4'" ? B DT 9 ? B DT 9 ? 1_555 NA ? N NA . ? B NA 107 ? 1_555 O2 ? B DT 9 ? B DT 9 ? 1_555 65.6 ? 95 O ? O HOH . ? A HOH 239 ? 1_455 NA ? N NA . ? B NA 107 ? 1_555 O ? P HOH . ? B HOH 207 ? 1_555 78.0 ? 96 O ? O HOH . ? A HOH 272 ? 2_547 NA ? N NA . ? B NA 107 ? 1_555 O ? P HOH . ? B HOH 207 ? 1_555 103.3 ? 97 "O5'" ? B DT 9 ? B DT 9 ? 1_555 NA ? N NA . ? B NA 107 ? 1_555 O ? P HOH . ? B HOH 207 ? 1_555 75.1 ? 98 "O4'" ? B DT 9 ? B DT 9 ? 1_555 NA ? N NA . ? B NA 107 ? 1_555 O ? P HOH . ? B HOH 207 ? 1_555 129.9 ? 99 O2 ? B DT 9 ? B DT 9 ? 1_555 NA ? N NA . ? B NA 107 ? 1_555 O ? P HOH . ? B HOH 207 ? 1_555 164.4 ? 100 O ? O HOH . ? A HOH 239 ? 1_455 NA ? N NA . ? B NA 107 ? 1_555 O ? P HOH . ? B HOH 235 ? 1_555 90.3 ? 101 O ? O HOH . ? A HOH 272 ? 2_547 NA ? N NA . ? B NA 107 ? 1_555 O ? P HOH . ? B HOH 235 ? 1_555 151.9 ? 102 "O5'" ? B DT 9 ? B DT 9 ? 1_555 NA ? N NA . ? B NA 107 ? 1_555 O ? P HOH . ? B HOH 235 ? 1_555 98.0 ? 103 "O4'" ? B DT 9 ? B DT 9 ? 1_555 NA ? N NA . ? B NA 107 ? 1_555 O ? P HOH . ? B HOH 235 ? 1_555 76.5 ? 104 O2 ? B DT 9 ? B DT 9 ? 1_555 NA ? N NA . ? B NA 107 ? 1_555 O ? P HOH . ? B HOH 235 ? 1_555 83.2 ? 105 O ? P HOH . ? B HOH 207 ? 1_555 NA ? N NA . ? B NA 107 ? 1_555 O ? P HOH . ? B HOH 235 ? 1_555 100.9 ? 106 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 83.1 ? 107 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 73.5 ? 108 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 87.7 ? 109 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 134.3 ? 110 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 65.3 ? 111 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 73.2 ? 112 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 112.6 ? 113 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 151.2 ? 114 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 74.8 ? 115 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 87.5 ? 116 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 157.0 ? 117 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 100.6 ? 118 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 129.1 ? 119 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 65.7 ? 120 O6 ? B DG 8 ? B DG 8 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 74.7 ? 121 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 71.2 ? 122 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 135.6 ? 123 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 117.1 ? 124 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 153.6 ? 125 O6 ? B DG 8 ? B DG 8 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 73.2 ? 126 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 91.3 ? 127 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 92.7 ? 128 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 67.4 ? 129 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 153.1 ? 130 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 103.4 ? 131 O6 ? B DG 8 ? B DG 8 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 132.1 ? 132 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 68.5 ? 133 O6 ? B DG 12 ? B DG 12 ? 1_555 K ? J K . ? B K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 78.1 ? 134 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 68.2 ? 135 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 105.7 ? 136 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 69.2 ? 137 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 68.3 ? 138 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 106.8 ? 139 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 70.0 ? 140 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 91.8 ? 141 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 153.3 ? 142 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 135.7 ? 143 O6 ? B DG 13 ? B DG 13 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 15 ? B DG 15 ? 1_555 80.0 ? 144 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 18 ? B DG 18 ? 1_555 151.7 ? 145 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 18 ? B DG 18 ? 1_555 137.8 ? 146 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 18 ? B DG 18 ? 1_555 81.1 ? 147 O6 ? B DG 13 ? B DG 13 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 18 ? B DG 18 ? 1_555 89.4 ? 148 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 18 ? B DG 18 ? 1_555 66.5 ? 149 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 140.0 ? 150 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 84.4 ? 151 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 89.9 ? 152 O6 ? B DG 13 ? B DG 13 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 150.6 ? 153 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 102.4 ? 154 O6 ? B DG 18 ? B DG 18 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 65.8 ? 155 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 82.6 ? 156 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 91.7 ? 157 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 153.3 ? 158 O6 ? B DG 13 ? B DG 13 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 135.4 ? 159 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 67.5 ? 160 O6 ? B DG 18 ? B DG 18 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 103.7 ? 161 O6 ? B DG 21 ? B DG 21 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 69.2 ? 162 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 17 ? B DG 17 ? 1_555 95.0 ? 163 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 18 ? B DG 18 ? 1_555 68.0 ? 164 O6 ? B DG 17 ? B DG 17 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 18 ? B DG 18 ? 1_555 81.3 ? 165 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 20 ? B DG 20 ? 1_555 157.6 ? 166 O6 ? B DG 17 ? B DG 17 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 20 ? B DG 20 ? 1_555 70.4 ? 167 O6 ? B DG 18 ? B DG 18 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 20 ? B DG 20 ? 1_555 92.4 ? 168 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 100.1 ? 169 O6 ? B DG 17 ? B DG 17 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 134.1 ? 170 O6 ? B DG 18 ? B DG 18 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 65.3 ? 171 O6 ? B DG 20 ? B DG 20 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 21 ? B DG 21 ? 1_555 80.2 ? 172 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 23 ? B DG 23 ? 1_555 131.3 ? 173 O6 ? B DG 17 ? B DG 17 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 23 ? B DG 23 ? 1_555 107.9 ? 174 O6 ? B DG 18 ? B DG 18 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 23 ? B DG 23 ? 1_555 155.6 ? 175 O6 ? B DG 20 ? B DG 20 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 23 ? B DG 23 ? 1_555 70.7 ? 176 O6 ? B DG 21 ? B DG 21 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 23 ? B DG 23 ? 1_555 93.8 ? 177 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 66.8 ? 178 O6 ? B DG 17 ? B DG 17 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 156.5 ? 179 O6 ? B DG 18 ? B DG 18 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 103.7 ? 180 O6 ? B DG 20 ? B DG 20 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 131.4 ? 181 O6 ? B DG 21 ? B DG 21 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 66.6 ? 182 O6 ? B DG 23 ? B DG 23 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 24 ? B DG 24 ? 1_555 77.0 ? 183 O6 ? B DG 15 ? B DG 15 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 26 ? B DG 26 ? 1_555 74.9 ? 184 O6 ? B DG 17 ? B DG 17 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 26 ? B DG 26 ? 1_555 70.7 ? 185 O6 ? B DG 18 ? B DG 18 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 26 ? B DG 26 ? 1_555 130.8 ? 186 O6 ? B DG 20 ? B DG 20 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 26 ? B DG 26 ? 1_555 113.8 ? 187 O6 ? B DG 21 ? B DG 21 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 26 ? B DG 26 ? 1_555 155.2 ? 188 O6 ? B DG 23 ? B DG 23 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 26 ? B DG 26 ? 1_555 73.4 ? 189 O6 ? B DG 24 ? B DG 24 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B DG 26 ? B DG 26 ? 1_555 89.6 ? 190 O ? P HOH . ? B HOH 244 ? 2_556 K ? K K . ? B K 104 ? 1_555 O ? P HOH . ? B HOH 260 ? 1_655 104.9 ? 191 O ? P HOH . ? B HOH 244 ? 2_556 K ? K K . ? B K 104 ? 1_555 O ? P HOH . ? B HOH 269 ? 1_555 68.1 ? 192 O ? P HOH . ? B HOH 260 ? 1_655 K ? K K . ? B K 104 ? 1_555 O ? P HOH . ? B HOH 269 ? 1_555 139.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-02-10 2 'Structure model' 1 1 2021-03-03 3 'Structure model' 1 2 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12_2829 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _pdbx_entry_details.entry_id 7D5E _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 282 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 305 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 272 ? ? 1_555 O B HOH 287 ? ? 2_546 2.16 2 1 O B HOH 281 ? ? 1_555 O B HOH 282 ? ? 2_456 2.17 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 K K K N N 77 NA NA NA N N 78 SPM N1 N N N 79 SPM C2 C N N 80 SPM C3 C N N 81 SPM C4 C N N 82 SPM N5 N N N 83 SPM C6 C N N 84 SPM C7 C N N 85 SPM C8 C N N 86 SPM C9 C N N 87 SPM N10 N N N 88 SPM C11 C N N 89 SPM C12 C N N 90 SPM C13 C N N 91 SPM N14 N N N 92 SPM HN11 H N N 93 SPM HN12 H N N 94 SPM H21 H N N 95 SPM H22 H N N 96 SPM H31 H N N 97 SPM H32 H N N 98 SPM H41 H N N 99 SPM H42 H N N 100 SPM HN5 H N N 101 SPM H61 H N N 102 SPM H62 H N N 103 SPM H71 H N N 104 SPM H72 H N N 105 SPM H81 H N N 106 SPM H82 H N N 107 SPM H91 H N N 108 SPM H92 H N N 109 SPM HN0 H N N 110 SPM H111 H N N 111 SPM H112 H N N 112 SPM H121 H N N 113 SPM H122 H N N 114 SPM H131 H N N 115 SPM H132 H N N 116 SPM HN41 H N N 117 SPM HN42 H N N 118 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 SPM N1 C2 sing N N 79 SPM N1 HN11 sing N N 80 SPM N1 HN12 sing N N 81 SPM C2 C3 sing N N 82 SPM C2 H21 sing N N 83 SPM C2 H22 sing N N 84 SPM C3 C4 sing N N 85 SPM C3 H31 sing N N 86 SPM C3 H32 sing N N 87 SPM C4 N5 sing N N 88 SPM C4 H41 sing N N 89 SPM C4 H42 sing N N 90 SPM N5 C6 sing N N 91 SPM N5 HN5 sing N N 92 SPM C6 C7 sing N N 93 SPM C6 H61 sing N N 94 SPM C6 H62 sing N N 95 SPM C7 C8 sing N N 96 SPM C7 H71 sing N N 97 SPM C7 H72 sing N N 98 SPM C8 C9 sing N N 99 SPM C8 H81 sing N N 100 SPM C8 H82 sing N N 101 SPM C9 N10 sing N N 102 SPM C9 H91 sing N N 103 SPM C9 H92 sing N N 104 SPM N10 C11 sing N N 105 SPM N10 HN0 sing N N 106 SPM C11 C12 sing N N 107 SPM C11 H111 sing N N 108 SPM C11 H112 sing N N 109 SPM C12 C13 sing N N 110 SPM C12 H121 sing N N 111 SPM C12 H122 sing N N 112 SPM C13 N14 sing N N 113 SPM C13 H131 sing N N 114 SPM C13 H132 sing N N 115 SPM N14 HN41 sing N N 116 SPM N14 HN42 sing N N 117 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7D5E 'double helix' 7D5E 'parallel strands' 7D5E 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 8 1_555 A DG 12 1_555 1.701 3.327 -0.117 0.961 5.282 -89.781 1 A_DG8:DG12_A A 8 ? A 12 ? 6 3 1 A DG 10 1_555 A DG 13 1_555 1.497 3.508 0.008 -1.243 -1.654 -91.313 2 A_DG10:DG13_A A 10 ? A 13 ? 6 3 1 A DG 6 1_555 A DG 2 1_555 -1.489 -3.525 -0.015 -0.354 0.037 89.711 3 A_DG6:DG2_A A 6 ? A 2 ? 6 3 1 A DG 18 1_555 A DG 21 1_555 1.452 3.548 0.006 -2.535 1.676 -90.065 4 A_DG18:DG21_A A 18 ? A 21 ? 6 3 1 A DG 23 1_555 A DG 20 1_555 -1.649 -3.404 -0.038 9.089 -4.824 89.657 5 A_DG23:DG20_A A 23 ? A 20 ? 6 3 1 A DG 26 1_555 A DG 17 1_555 1.695 3.392 -0.443 -0.849 12.400 -88.744 6 A_DG26:DG17_A A 26 ? A 17 ? 6 3 1 A DG 24 1_555 A DG 15 1_555 1.415 3.680 0.182 -5.700 -0.675 -90.002 7 A_DG24:DG15_A A 24 ? A 15 ? 6 3 1 B DG 1 1_555 B DG 12 1_555 1.651 -3.384 0.007 -3.772 -9.098 -88.323 8 B_DG1:DG12_B B 1 ? B 12 ? 6 3 1 B DG 4 1_555 B DG 8 1_555 -1.688 3.387 0.174 -4.335 -0.895 90.974 9 B_DG4:DG8_B B 4 ? B 8 ? 6 3 1 B DG 13 1_555 B DG 10 1_555 1.574 -3.526 -0.010 -1.148 3.389 -90.940 10 B_DG13:DG10_B B 13 ? B 10 ? 6 3 1 B DG 20 1_555 B DG 23 1_555 1.604 3.478 0.081 -9.606 3.453 -89.205 11 B_DG20:DG23_B B 20 ? B 23 ? 6 3 1 B DG 21 1_555 B DG 24 1_555 1.581 3.559 -0.023 -4.132 4.678 -89.625 12 B_DG21:DG24_B B 21 ? B 24 ? 6 3 1 B DG 18 1_555 B DG 15 1_555 -1.491 -3.529 0.033 1.867 -0.788 91.104 13 B_DG18:DG15_B B 18 ? B 15 ? 6 3 1 B DG 26 1_555 B DG 17 1_555 1.698 3.390 -0.367 -0.284 8.404 -89.003 14 B_DG26:DG17_B B 26 ? B 17 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 8 1_555 A DG 12 1_555 A DG 10 1_555 A DG 13 1_555 -0.448 -0.750 -3.408 2.341 1.015 27.319 -1.318 0.337 -3.459 2.143 -4.943 27.436 1 AA_DG8DG10:DG13DG12_AA A 8 ? A 12 ? A 10 ? A 13 ? 1 A DG 10 1_555 A DG 13 1_555 A DG 6 1_555 A DG 2 1_555 -1.490 -3.611 -0.051 0.432 0.143 179.005 -1.805 0.745 -0.051 0.072 -0.216 179.005 2 AA_DG10DG6:DG2DG13_AA A 10 ? A 13 ? A 6 ? A 2 ? 1 A DG 6 1_555 A DG 2 1_555 A DG 18 1_555 A DG 21 1_555 0.699 -3.409 1.267 178.746 -5.521 -55.464 1.715 0.695 -0.122 2.770 89.685 -178.965 3 AA_DG6DG18:DG21DG2_AA A 6 ? A 2 ? A 18 ? A 21 ? 1 A DG 18 1_555 A DG 21 1_555 A DG 23 1_555 A DG 20 1_555 -0.440 -1.877 3.463 1.382 -4.064 65.043 -1.562 0.470 3.553 -3.775 -1.284 65.169 4 AA_DG18DG23:DG20DG21_AA A 18 ? A 21 ? A 23 ? A 20 ? 1 B DG 1 1_555 B DG 12 1_555 B DG 4 1_555 B DG 8 1_555 -1.666 3.389 0.288 0.679 -1.675 179.026 1.695 0.833 0.288 -0.838 -0.340 179.026 5 BB_DG1DG4:DG8DG12_BB B 1 ? B 12 ? B 4 ? B 8 ? 1 B DG 4 1_555 B DG 8 1_555 B DG 13 1_555 B DG 10 1_555 1.385 -2.998 3.197 1.515 2.176 -117.608 1.730 0.825 3.220 -1.272 0.886 -117.627 6 BB_DG4DG13:DG10DG8_BB B 4 ? B 8 ? B 13 ? B 10 ? 1 B DG 20 1_555 B DG 23 1_555 B DG 21 1_555 B DG 24 1_555 -0.771 -0.511 -3.356 3.378 1.204 25.063 -0.802 0.735 -3.449 2.756 -7.733 25.314 7 BB_DG20DG21:DG24DG23_BB B 20 ? B 23 ? B 21 ? B 24 ? 1 B DG 21 1_555 B DG 24 1_555 B DG 18 1_555 B DG 15 1_555 1.440 3.630 -0.056 -4.441 3.024 -179.424 -1.815 0.720 -0.057 -1.512 -2.221 -179.425 8 BB_DG21DG18:DG15DG24_BB B 21 ? B 24 ? B 18 ? B 15 ? 1 B DG 18 1_555 B DG 15 1_555 B DG 26 1_555 B DG 17 1_555 0.575 1.069 3.339 0.486 -1.830 -24.302 -1.941 1.518 3.397 4.338 1.152 -24.374 9 BB_DG18DG26:DG17DG15_BB B 18 ? B 15 ? B 26 ? B 17 ? # _pdbx_audit_support.funding_organization 'National Research Foundation (NRF, Singapore)' _pdbx_audit_support.country Singapore _pdbx_audit_support.grant_number NRF-NRFI2017-09 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 SPERMINE SPM 4 'SODIUM ION' NA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4U5M _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #