HEADER HYDROLASE 26-SEP-20 7D5J TITLE CRYSTAL STRUCTURE OF R220A VARIANT PENA BETA-LACTAMASE FROM TITLE 2 BURKHOLDERIA MULTIVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENA BETA-LACTAMASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: R220A VARIANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MULTIVORANS (STRAIN ATCC 17616 / SOURCE 3 249); SOURCE 4 ORGANISM_TAXID: 395019; SOURCE 5 GENE: PENA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-LACTAMASE, DRUG-RESISTANT, ANTIBIOTICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.NUKAGA,T.HOSHINO,K.M.PAPP-WALLACE REVDAT 4 29-NOV-23 7D5J 1 REMARK REVDAT 3 21-APR-21 7D5J 1 JRNL REVDAT 2 07-APR-21 7D5J 1 JRNL REVDAT 1 17-MAR-21 7D5J 0 JRNL AUTH M.NUKAGA,M.J.YOON,M.A.TARACILIA,T.HOSHINO,S.A.BECKA, JRNL AUTH 2 E.T.ZEISER,J.R.JOHNSON,K.M.PAPP-WALLACE JRNL TITL ASSESSING THE POTENCY OF BETA-LACTAMASE INHIBITORS WITH JRNL TITL 2 DIVERSE INACTIVATION MECHANISMS AGAINST THE PENA1 JRNL TITL 3 CARBAPENEMASE FROM BURKHOLDERIA MULTIVORANS . JRNL REF ACS INFECT DIS. V. 7 826 2021 JRNL REFN ESSN 2373-8227 JRNL PMID 33723985 JRNL DOI 10.1021/ACSINFECDIS.0C00682 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.190 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 113415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2700 - 4.6800 0.99 3750 196 0.1653 0.1798 REMARK 3 2 4.6800 - 3.7100 0.98 3638 192 0.1484 0.1374 REMARK 3 3 3.7100 - 3.2400 0.98 3574 188 0.1545 0.1672 REMARK 3 4 3.2400 - 2.9500 1.00 3696 194 0.1695 0.1662 REMARK 3 5 2.9500 - 2.7400 0.99 3619 191 0.1728 0.1937 REMARK 3 6 2.7400 - 2.5800 0.98 3587 189 0.1773 0.2107 REMARK 3 7 2.5800 - 2.4500 0.99 3615 190 0.1715 0.1762 REMARK 3 8 2.4500 - 2.3400 0.99 3660 192 0.1728 0.1975 REMARK 3 9 2.3400 - 2.2500 0.96 3515 186 0.1812 0.2133 REMARK 3 10 2.2500 - 2.1700 0.96 3492 184 0.1751 0.1926 REMARK 3 11 2.1700 - 2.1000 0.99 3615 190 0.1725 0.2026 REMARK 3 12 2.1000 - 2.0400 0.92 3347 175 0.1931 0.2345 REMARK 3 13 2.0400 - 1.9900 1.00 3678 194 0.1694 0.1667 REMARK 3 14 1.9900 - 1.9400 0.99 3601 190 0.1748 0.2152 REMARK 3 15 1.9400 - 1.9000 0.95 3507 184 0.1918 0.2333 REMARK 3 16 1.9000 - 1.8600 0.99 3635 192 0.1829 0.2070 REMARK 3 17 1.8600 - 1.8200 1.00 3577 188 0.1898 0.2131 REMARK 3 18 1.8200 - 1.7900 1.00 3627 191 0.1790 0.2047 REMARK 3 19 1.7900 - 1.7500 1.00 3633 191 0.1776 0.2137 REMARK 3 20 1.7500 - 1.7200 1.00 3647 191 0.1824 0.2256 REMARK 3 21 1.7200 - 1.7000 1.00 3631 191 0.1855 0.2191 REMARK 3 22 1.7000 - 1.6700 1.00 3643 192 0.1882 0.2360 REMARK 3 23 1.6700 - 1.6500 1.00 3639 192 0.1831 0.2114 REMARK 3 24 1.6500 - 1.6200 1.00 3566 187 0.1840 0.2142 REMARK 3 25 1.6200 - 1.6000 1.00 3684 194 0.1895 0.2509 REMARK 3 26 1.6000 - 1.5800 0.99 3603 190 0.1795 0.1936 REMARK 3 27 1.5800 - 1.5600 1.00 3656 193 0.1909 0.2233 REMARK 3 28 1.5600 - 1.5400 1.00 3588 189 0.1926 0.2211 REMARK 3 29 1.5400 - 1.5200 0.97 3600 189 0.2330 0.2992 REMARK 3 30 1.5200 - 1.5100 0.87 3122 165 0.2653 0.2770 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.136 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.759 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5871 REMARK 3 ANGLE : 0.829 8028 REMARK 3 CHIRALITY : 0.049 945 REMARK 3 PLANARITY : 0.005 1050 REMARK 3 DIHEDRAL : 13.566 2073 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 42.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.18.2_3874 REMARK 200 STARTING MODEL: 3W4Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250MICROL RESERVOIR (25% POLYETHYLENE REMARK 280 GLYCOL 8KDA (PEG 8000), 0.1 M MES AT PH 6.5)), 4MICROL HANGING REMARK 280 DROP (7.5 MG/ML PROTEIN, 12.5% PEG 8000, 0.05M MES AT PH 6.5). REMARK 280 ADDING ACETONE TO THE DROP (FINAL 4%) IMPROVED THE CRYSTAL SIZE REMARK 280 AND SHAPE., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.67150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.57900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.67150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.57900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 455 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 620 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 644 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 645 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 THR A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLN A -7 REMARK 465 ARG A -6 REMARK 465 ARG A -5 REMARK 465 ILE A -4 REMARK 465 LEU A -3 REMARK 465 LEU A -2 REMARK 465 LEU A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 GLY A 11 REMARK 465 ALA A 12 REMARK 465 CYS A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 ARG A 16 REMARK 465 ASP A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 VAL A 20 REMARK 465 SER A 21 REMARK 465 ASP A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 PRO A 26 REMARK 465 VAL A 27 REMARK 465 GLY A 28 REMARK 465 MET B -12 REMARK 465 THR B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLN B -7 REMARK 465 ARG B -6 REMARK 465 ARG B -5 REMARK 465 ILE B -4 REMARK 465 LEU B -3 REMARK 465 LEU B -2 REMARK 465 LEU B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 PRO B 5 REMARK 465 LEU B 6 REMARK 465 ALA B 7 REMARK 465 LEU B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 12 REMARK 465 CYS B 13 REMARK 465 ALA B 14 REMARK 465 ALA B 15 REMARK 465 ARG B 16 REMARK 465 ASP B 17 REMARK 465 ALA B 18 REMARK 465 THR B 19 REMARK 465 VAL B 20 REMARK 465 SER B 21 REMARK 465 ASP B 22 REMARK 465 ALA B 23 REMARK 465 ALA B 24 REMARK 465 SER B 25 REMARK 465 PRO B 26 REMARK 465 VAL B 27 REMARK 465 GLY B 28 REMARK 465 MET C -12 REMARK 465 THR C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLN C -7 REMARK 465 ARG C -6 REMARK 465 ARG C -5 REMARK 465 ILE C -4 REMARK 465 LEU C -3 REMARK 465 LEU C -2 REMARK 465 LEU C -1 REMARK 465 ALA C 0 REMARK 465 ALA C 1 REMARK 465 ALA C 2 REMARK 465 THR C 3 REMARK 465 ALA C 4 REMARK 465 PRO C 5 REMARK 465 LEU C 6 REMARK 465 ALA C 7 REMARK 465 LEU C 8 REMARK 465 SER C 9 REMARK 465 LEU C 10 REMARK 465 GLY C 11 REMARK 465 ALA C 12 REMARK 465 CYS C 13 REMARK 465 ALA C 14 REMARK 465 ALA C 15 REMARK 465 ARG C 16 REMARK 465 ASP C 17 REMARK 465 ALA C 18 REMARK 465 THR C 19 REMARK 465 VAL C 20 REMARK 465 SER C 21 REMARK 465 ASP C 22 REMARK 465 ALA C 23 REMARK 465 ALA C 24 REMARK 465 SER C 25 REMARK 465 PRO C 26 REMARK 465 VAL C 27 REMARK 465 GLY C 28 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 99 NE CZ NH1 NH2 REMARK 470 ARG A 111 NE CZ NH1 NH2 REMARK 470 LYS A 215 CE NZ REMARK 470 LYS A 219 CD CE NZ REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 256 CD NE CZ NH1 NH2 REMARK 470 LYS A 273 CD CE NZ REMARK 470 ARG B 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 99 CD NE CZ NH1 NH2 REMARK 470 ARG B 111 NE CZ NH1 NH2 REMARK 470 LYS B 215 NZ REMARK 470 LYS B 219 CD CE NZ REMARK 470 ARG B 230 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 256 CD NE CZ NH1 NH2 REMARK 470 LYS B 273 CD CE NZ REMARK 470 ARG C 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 99 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 111 NE CZ NH1 NH2 REMARK 470 LYS C 219 CD CE NZ REMARK 470 ARG C 230 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 256 CD NE CZ NH1 NH2 REMARK 470 LYS C 273 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -140.25 48.25 REMARK 500 TYR A 105 79.81 60.60 REMARK 500 ALA A 220 -123.19 -100.57 REMARK 500 CYS B 69 -141.39 49.79 REMARK 500 TYR B 105 79.73 59.40 REMARK 500 ALA B 220 -123.03 -99.31 REMARK 500 CYS C 69 -141.53 48.63 REMARK 500 TYR C 105 80.76 58.34 REMARK 500 ALA C 220 -122.92 -99.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES C 301 DBREF1 7D5J A -12 291 UNP A0A0H3KN52_BURM1 DBREF2 7D5J A A0A0H3KN52 1 302 DBREF1 7D5J B -12 291 UNP A0A0H3KN52_BURM1 DBREF2 7D5J B A0A0H3KN52 1 302 DBREF1 7D5J C -12 291 UNP A0A0H3KN52_BURM1 DBREF2 7D5J C A0A0H3KN52 1 302 SEQADV 7D5J ALA A 220 UNP A0A0H3KN5 ARG 233 VARIANT SEQADV 7D5J ALA B 220 UNP A0A0H3KN5 ARG 233 VARIANT SEQADV 7D5J ALA C 220 UNP A0A0H3KN5 ARG 233 VARIANT SEQRES 1 A 302 MET THR HIS SER SER GLN ARG ARG ILE LEU LEU LEU ALA SEQRES 2 A 302 ALA ALA THR ALA PRO LEU ALA LEU SER LEU GLY ALA CYS SEQRES 3 A 302 ALA ALA ARG ASP ALA THR VAL SER ASP ALA ALA SER PRO SEQRES 4 A 302 VAL GLY ALA ALA PRO ALA SER PHE ALA ALA LEU GLU ARG SEQRES 5 A 302 ALA ALA GLY GLY ARG LEU GLY VAL CYS ALA ILE ASP THR SEQRES 6 A 302 ALA THR GLY ARG ARG ALA LEU HIS ARG ALA ASP GLU ARG SEQRES 7 A 302 PHE PRO PHE CYS SER THR PHE LYS ALA MET LEU GLY ALA SEQRES 8 A 302 ALA VAL LEU ALA GLN SER VAL ALA HIS PRO GLY LEU LEU SEQRES 9 A 302 GLN GLN ARG VAL THR TYR GLY ARG SER ASP LEU VAL ASN SEQRES 10 A 302 TYR SER PRO VAL THR GLU ARG HIS VAL ASP THR GLY MET SEQRES 11 A 302 THR VAL ALA GLU LEU CYS ALA ALA THR ILE GLN TYR SER SEQRES 12 A 302 ASP ASN THR ALA ALA ASN GLU LEU MET LYS ARG ILE GLY SEQRES 13 A 302 GLY PRO ALA ALA VAL THR ALA TYR ALA ARG SER ILE GLY SEQRES 14 A 302 ASP ASP THR PHE ARG LEU ASP ARG TRP GLU THR GLU LEU SEQRES 15 A 302 ASN THR ALA LEU PRO GLY ASP LEU ARG ASP THR THR THR SEQRES 16 A 302 PRO ALA ALA MET ALA ALA ASN LEU ARG VAL LEU VAL LEU SEQRES 17 A 302 GLY ASP ALA LEU PRO PRO ALA GLN ARG ALA GLN LEU ILE SEQRES 18 A 302 GLU TRP LEU ARG GLY ASN LYS VAL GLY ASP LYS ALA ILE SEQRES 19 A 302 ARG ALA GLY VAL PRO THR GLY TRP ARG VAL GLY ASP LYS SEQRES 20 A 302 THR GLY THR GLY ASP TYR GLY THR THR ASN ASP VAL GLY SEQRES 21 A 302 VAL LEU TRP PRO PRO SER ARG ALA PRO ILE VAL LEU ALA SEQRES 22 A 302 VAL TYR TYR THR GLN THR ARG ALA ASP ALA LYS ALA LYS SEQRES 23 A 302 ASP ASP VAL ILE ALA ALA ALA THR ARG ILE ALA SER ALA SEQRES 24 A 302 THR LEU ALA SEQRES 1 B 302 MET THR HIS SER SER GLN ARG ARG ILE LEU LEU LEU ALA SEQRES 2 B 302 ALA ALA THR ALA PRO LEU ALA LEU SER LEU GLY ALA CYS SEQRES 3 B 302 ALA ALA ARG ASP ALA THR VAL SER ASP ALA ALA SER PRO SEQRES 4 B 302 VAL GLY ALA ALA PRO ALA SER PHE ALA ALA LEU GLU ARG SEQRES 5 B 302 ALA ALA GLY GLY ARG LEU GLY VAL CYS ALA ILE ASP THR SEQRES 6 B 302 ALA THR GLY ARG ARG ALA LEU HIS ARG ALA ASP GLU ARG SEQRES 7 B 302 PHE PRO PHE CYS SER THR PHE LYS ALA MET LEU GLY ALA SEQRES 8 B 302 ALA VAL LEU ALA GLN SER VAL ALA HIS PRO GLY LEU LEU SEQRES 9 B 302 GLN GLN ARG VAL THR TYR GLY ARG SER ASP LEU VAL ASN SEQRES 10 B 302 TYR SER PRO VAL THR GLU ARG HIS VAL ASP THR GLY MET SEQRES 11 B 302 THR VAL ALA GLU LEU CYS ALA ALA THR ILE GLN TYR SER SEQRES 12 B 302 ASP ASN THR ALA ALA ASN GLU LEU MET LYS ARG ILE GLY SEQRES 13 B 302 GLY PRO ALA ALA VAL THR ALA TYR ALA ARG SER ILE GLY SEQRES 14 B 302 ASP ASP THR PHE ARG LEU ASP ARG TRP GLU THR GLU LEU SEQRES 15 B 302 ASN THR ALA LEU PRO GLY ASP LEU ARG ASP THR THR THR SEQRES 16 B 302 PRO ALA ALA MET ALA ALA ASN LEU ARG VAL LEU VAL LEU SEQRES 17 B 302 GLY ASP ALA LEU PRO PRO ALA GLN ARG ALA GLN LEU ILE SEQRES 18 B 302 GLU TRP LEU ARG GLY ASN LYS VAL GLY ASP LYS ALA ILE SEQRES 19 B 302 ARG ALA GLY VAL PRO THR GLY TRP ARG VAL GLY ASP LYS SEQRES 20 B 302 THR GLY THR GLY ASP TYR GLY THR THR ASN ASP VAL GLY SEQRES 21 B 302 VAL LEU TRP PRO PRO SER ARG ALA PRO ILE VAL LEU ALA SEQRES 22 B 302 VAL TYR TYR THR GLN THR ARG ALA ASP ALA LYS ALA LYS SEQRES 23 B 302 ASP ASP VAL ILE ALA ALA ALA THR ARG ILE ALA SER ALA SEQRES 24 B 302 THR LEU ALA SEQRES 1 C 302 MET THR HIS SER SER GLN ARG ARG ILE LEU LEU LEU ALA SEQRES 2 C 302 ALA ALA THR ALA PRO LEU ALA LEU SER LEU GLY ALA CYS SEQRES 3 C 302 ALA ALA ARG ASP ALA THR VAL SER ASP ALA ALA SER PRO SEQRES 4 C 302 VAL GLY ALA ALA PRO ALA SER PHE ALA ALA LEU GLU ARG SEQRES 5 C 302 ALA ALA GLY GLY ARG LEU GLY VAL CYS ALA ILE ASP THR SEQRES 6 C 302 ALA THR GLY ARG ARG ALA LEU HIS ARG ALA ASP GLU ARG SEQRES 7 C 302 PHE PRO PHE CYS SER THR PHE LYS ALA MET LEU GLY ALA SEQRES 8 C 302 ALA VAL LEU ALA GLN SER VAL ALA HIS PRO GLY LEU LEU SEQRES 9 C 302 GLN GLN ARG VAL THR TYR GLY ARG SER ASP LEU VAL ASN SEQRES 10 C 302 TYR SER PRO VAL THR GLU ARG HIS VAL ASP THR GLY MET SEQRES 11 C 302 THR VAL ALA GLU LEU CYS ALA ALA THR ILE GLN TYR SER SEQRES 12 C 302 ASP ASN THR ALA ALA ASN GLU LEU MET LYS ARG ILE GLY SEQRES 13 C 302 GLY PRO ALA ALA VAL THR ALA TYR ALA ARG SER ILE GLY SEQRES 14 C 302 ASP ASP THR PHE ARG LEU ASP ARG TRP GLU THR GLU LEU SEQRES 15 C 302 ASN THR ALA LEU PRO GLY ASP LEU ARG ASP THR THR THR SEQRES 16 C 302 PRO ALA ALA MET ALA ALA ASN LEU ARG VAL LEU VAL LEU SEQRES 17 C 302 GLY ASP ALA LEU PRO PRO ALA GLN ARG ALA GLN LEU ILE SEQRES 18 C 302 GLU TRP LEU ARG GLY ASN LYS VAL GLY ASP LYS ALA ILE SEQRES 19 C 302 ARG ALA GLY VAL PRO THR GLY TRP ARG VAL GLY ASP LYS SEQRES 20 C 302 THR GLY THR GLY ASP TYR GLY THR THR ASN ASP VAL GLY SEQRES 21 C 302 VAL LEU TRP PRO PRO SER ARG ALA PRO ILE VAL LEU ALA SEQRES 22 C 302 VAL TYR TYR THR GLN THR ARG ALA ASP ALA LYS ALA LYS SEQRES 23 C 302 ASP ASP VAL ILE ALA ALA ALA THR ARG ILE ALA SER ALA SEQRES 24 C 302 THR LEU ALA HET MES A 301 12 HET MES B 301 12 HET MES C 301 12 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 4 MES 3(C6 H13 N O4 S) FORMUL 7 HOH *714(H2 O) HELIX 1 AA1 SER A 33 GLY A 42 1 10 HELIX 2 AA2 THR A 71 HIS A 87 1 17 HELIX 3 AA3 GLY A 89 GLN A 92 5 4 HELIX 4 AA4 GLY A 98 LEU A 102 5 5 HELIX 5 AA5 VAL A 108 HIS A 112 5 5 HELIX 6 AA6 VAL A 119 TYR A 129 1 11 HELIX 7 AA7 ASP A 131 GLY A 143 1 13 HELIX 8 AA8 GLY A 143 ILE A 155 1 13 HELIX 9 AA9 THR A 167 THR A 171 5 5 HELIX 10 AB1 THR A 182 GLY A 196 1 15 HELIX 11 AB2 PRO A 200 GLY A 213 1 14 HELIX 12 AB3 ALA A 220 VAL A 225 1 6 HELIX 13 AB4 ASP A 277 LEU A 290 1 14 HELIX 14 AB5 SER B 33 GLY B 42 1 10 HELIX 15 AB6 THR B 71 HIS B 87 1 17 HELIX 16 AB7 GLY B 89 GLN B 92 5 4 HELIX 17 AB8 GLY B 98 LEU B 102 5 5 HELIX 18 AB9 VAL B 108 HIS B 112 5 5 HELIX 19 AC1 VAL B 119 TYR B 129 1 11 HELIX 20 AC2 ASP B 131 GLY B 143 1 13 HELIX 21 AC3 GLY B 143 ILE B 155 1 13 HELIX 22 AC4 THR B 167 THR B 171 5 5 HELIX 23 AC5 THR B 182 LEU B 195 1 14 HELIX 24 AC6 PRO B 200 GLY B 213 1 14 HELIX 25 AC7 ALA B 220 VAL B 225 1 6 HELIX 26 AC8 ASP B 277 LEU B 290 1 14 HELIX 27 AC9 SER C 33 GLY C 42 1 10 HELIX 28 AD1 THR C 71 HIS C 87 1 17 HELIX 29 AD2 GLY C 89 GLN C 92 5 4 HELIX 30 AD3 GLY C 98 LEU C 102 5 5 HELIX 31 AD4 VAL C 108 HIS C 112 5 5 HELIX 32 AD5 VAL C 119 TYR C 129 1 11 HELIX 33 AD6 ASP C 131 GLY C 143 1 13 HELIX 34 AD7 GLY C 143 ILE C 155 1 13 HELIX 35 AD8 THR C 167 THR C 171 5 5 HELIX 36 AD9 THR C 182 LEU C 195 1 14 HELIX 37 AE1 PRO C 200 GLY C 213 1 14 HELIX 38 AE2 ALA C 220 VAL C 225 1 6 HELIX 39 AE3 ASP C 277 LEU C 290 1 14 SHEET 1 AA1 5 ARG A 57 HIS A 60 0 SHEET 2 AA1 5 ARG A 44 ASP A 51 -1 N VAL A 47 O HIS A 60 SHEET 3 AA1 5 ILE A 259 THR A 266 -1 O TYR A 264 N GLY A 46 SHEET 4 AA1 5 THR A 243 TRP A 251 -1 N LEU A 250 O ILE A 259 SHEET 5 AA1 5 ARG A 230 GLY A 238 -1 N ARG A 230 O TRP A 251 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AA3 2 ARG A 94 VAL A 95 0 SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N VAL A 95 SHEET 1 AA4 5 ARG B 57 HIS B 60 0 SHEET 2 AA4 5 ARG B 44 ASP B 51 -1 N VAL B 47 O HIS B 60 SHEET 3 AA4 5 ILE B 259 THR B 266 -1 O TYR B 264 N GLY B 46 SHEET 4 AA4 5 THR B 243 TRP B 251 -1 N LEU B 250 O ILE B 259 SHEET 5 AA4 5 ARG B 230 GLY B 238 -1 N GLY B 236 O ASN B 245 SHEET 1 AA5 2 PHE B 66 PRO B 67 0 SHEET 2 AA5 2 THR B 180 THR B 181 -1 O THR B 181 N PHE B 66 SHEET 1 AA6 2 ARG B 94 VAL B 95 0 SHEET 2 AA6 2 MET B 117 THR B 118 -1 O MET B 117 N VAL B 95 SHEET 1 AA7 5 ARG C 57 HIS C 60 0 SHEET 2 AA7 5 ARG C 44 ASP C 51 -1 N VAL C 47 O HIS C 60 SHEET 3 AA7 5 ILE C 259 THR C 266 -1 O TYR C 264 N GLY C 46 SHEET 4 AA7 5 THR C 243 TRP C 251 -1 N LEU C 250 O ILE C 259 SHEET 5 AA7 5 ARG C 230 GLY C 238 -1 N ARG C 230 O TRP C 251 SHEET 1 AA8 2 PHE C 66 PRO C 67 0 SHEET 2 AA8 2 THR C 180 THR C 181 -1 O THR C 181 N PHE C 66 SHEET 1 AA9 2 ARG C 94 VAL C 95 0 SHEET 2 AA9 2 MET C 117 THR C 118 -1 O MET C 117 N VAL C 95 CISPEP 1 GLU A 166 THR A 167 0 -0.98 CISPEP 2 GLU B 166 THR B 167 0 -0.86 CISPEP 3 GLU C 166 THR C 167 0 -1.62 SITE 1 AC1 9 SER A 70 TYR A 105 SER A 130 LYS A 234 SITE 2 AC1 9 THR A 235 GLY A 236 THR A 237 HOH A 476 SITE 3 AC1 9 HOH A 563 SITE 1 AC2 8 SER B 70 TYR B 105 SER B 130 LYS B 234 SITE 2 AC2 8 THR B 235 GLY B 236 THR B 237 HOH B 542 SITE 1 AC3 9 SER C 70 TYR C 105 SER C 130 LYS C 234 SITE 2 AC3 9 THR C 235 GLY C 236 THR C 237 HOH C 540 SITE 3 AC3 9 HOH C 545 CRYST1 123.343 71.158 84.541 90.00 90.05 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008107 0.000000 0.000006 0.00000 SCALE2 0.000000 0.014053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011829 0.00000