HEADER SIGNALING PROTEIN 28-SEP-20 7D62 TITLE PGPG-SPECIFIC PHOSPHODIESTERASE - PGGH FROM VIBRIO CHOLRAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PGGH; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39315 SOURCE 3 / EL TOR INABA N16961); SOURCE 4 ORGANISM_TAXID: 243277; SOURCE 5 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 6 GENE: VC_A0593; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PGPG, PHOSPHODIESTERASE, NANORNASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.-C.HA,Y.JANG REVDAT 2 27-MAR-24 7D62 1 REMARK REVDAT 1 28-OCT-20 7D62 0 JRNL AUTH J.-W.LEE,K.HEO,Y.JANG,N.-C.HA,Y.-J.SEOK JRNL TITL A PGPG-SPECIFIC PHOSPHODIESTERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: 000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 43968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.550 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2500 - 4.5700 1.00 3520 167 0.1689 0.1992 REMARK 3 2 4.5700 - 3.6300 1.00 3373 161 0.1575 0.2054 REMARK 3 3 3.6300 - 3.1700 1.00 3336 160 0.1959 0.2260 REMARK 3 4 3.1700 - 2.8800 1.00 3317 157 0.2138 0.2550 REMARK 3 5 2.8800 - 2.6700 1.00 3289 157 0.2145 0.2503 REMARK 3 6 2.6700 - 2.5200 1.00 3287 157 0.1998 0.2750 REMARK 3 7 2.5200 - 2.3900 1.00 3282 157 0.2001 0.2524 REMARK 3 8 2.3900 - 2.2900 1.00 3253 155 0.1929 0.2273 REMARK 3 9 2.2900 - 2.2000 0.99 3220 152 0.2050 0.2480 REMARK 3 10 2.2000 - 2.1200 0.97 3163 152 0.2139 0.2625 REMARK 3 11 2.1200 - 2.0600 0.89 2908 139 0.2082 0.2774 REMARK 3 12 2.0600 - 2.0000 0.77 2492 118 0.2553 0.2890 REMARK 3 13 2.0000 - 1.9400 0.63 2034 97 0.2890 0.3791 REMARK 3 14 1.9400 - 1.9000 0.46 1494 71 0.3234 0.3327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4816 REMARK 3 ANGLE : 0.948 6516 REMARK 3 CHIRALITY : 0.057 721 REMARK 3 PLANARITY : 0.005 841 REMARK 3 DIHEDRAL : 5.699 633 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6950 94.7126 17.7945 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: 0.0853 REMARK 3 T33: 0.1120 T12: -0.0011 REMARK 3 T13: 0.0169 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.3336 L22: 2.5946 REMARK 3 L33: 2.2357 L12: 0.4971 REMARK 3 L13: 0.2908 L23: -0.3664 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: -0.0417 S13: 0.2248 REMARK 3 S21: 0.2146 S22: 0.0366 S23: 0.1925 REMARK 3 S31: -0.4331 S32: 0.0045 S33: -0.0268 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7379 87.7647 17.8823 REMARK 3 T TENSOR REMARK 3 T11: 0.1073 T22: 0.1532 REMARK 3 T33: 0.0811 T12: -0.0377 REMARK 3 T13: -0.0482 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.0262 L22: 3.1098 REMARK 3 L33: 2.4296 L12: -0.7773 REMARK 3 L13: 0.2337 L23: -0.1898 REMARK 3 S TENSOR REMARK 3 S11: 0.1112 S12: 0.0333 S13: 0.2316 REMARK 3 S21: 0.0447 S22: -0.0573 S23: -0.4775 REMARK 3 S31: -0.1241 S32: 0.3951 S33: 0.0164 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1331 79.3524 11.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1377 REMARK 3 T33: 0.1191 T12: -0.0157 REMARK 3 T13: 0.0080 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.7958 L22: 0.8130 REMARK 3 L33: 4.1664 L12: 0.4123 REMARK 3 L13: 1.8323 L23: 1.0884 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: -0.3167 S13: 0.0387 REMARK 3 S21: 0.1960 S22: -0.0683 S23: 0.0729 REMARK 3 S31: -0.0712 S32: -0.3656 S33: 0.0045 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6535 80.8375 -9.4872 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: 0.1267 REMARK 3 T33: 0.0826 T12: 0.0228 REMARK 3 T13: -0.0242 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 0.7237 L22: 2.2346 REMARK 3 L33: 1.1809 L12: -0.1228 REMARK 3 L13: 0.4235 L23: -1.1435 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: 0.0361 S13: -0.0372 REMARK 3 S21: -0.0354 S22: 0.0492 S23: 0.1164 REMARK 3 S31: 0.0288 S32: -0.1075 S33: -0.0333 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6956 79.5113 -10.8539 REMARK 3 T TENSOR REMARK 3 T11: 0.0495 T22: 0.2599 REMARK 3 T33: 0.3518 T12: 0.0053 REMARK 3 T13: -0.0318 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 1.1886 L22: 3.8983 REMARK 3 L33: 3.9516 L12: 1.3121 REMARK 3 L13: -1.0903 L23: -2.7492 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: 0.1311 S13: 0.1880 REMARK 3 S21: -0.0499 S22: -0.0656 S23: -0.5880 REMARK 3 S31: -0.0094 S32: 0.6199 S33: 0.2567 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5835 84.1188 -18.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.0610 T22: 0.2007 REMARK 3 T33: 0.1197 T12: 0.0124 REMARK 3 T13: 0.0271 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.6191 L22: 3.1628 REMARK 3 L33: 2.0051 L12: -0.4146 REMARK 3 L13: 0.8540 L23: -0.1958 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: 0.3150 S13: 0.0211 REMARK 3 S21: -0.3532 S22: -0.1657 S23: -0.4154 REMARK 3 S31: 0.0780 S32: 0.1255 S33: 0.0794 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2676 94.3634 -26.9570 REMARK 3 T TENSOR REMARK 3 T11: 0.3785 T22: 0.3518 REMARK 3 T33: 0.2087 T12: -0.0575 REMARK 3 T13: -0.1090 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.5660 L22: 3.4928 REMARK 3 L33: 4.2080 L12: 0.5326 REMARK 3 L13: -0.5774 L23: 0.7012 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: 0.4419 S13: 0.0167 REMARK 3 S21: -0.6970 S22: 0.1055 S23: 0.3012 REMARK 3 S31: 0.1600 S32: -0.0364 S33: -0.0658 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7800 97.0974 -8.7500 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.1303 REMARK 3 T33: 0.2725 T12: 0.0262 REMARK 3 T13: 0.0511 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.5915 L22: 4.9853 REMARK 3 L33: 2.1369 L12: 1.6735 REMARK 3 L13: -0.3107 L23: 0.1871 REMARK 3 S TENSOR REMARK 3 S11: -0.0749 S12: 0.0925 S13: -0.3072 REMARK 3 S21: 0.2395 S22: 0.0825 S23: 0.1087 REMARK 3 S31: 0.2375 S32: -0.0840 S33: -0.0016 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8291 104.7505 -6.3386 REMARK 3 T TENSOR REMARK 3 T11: 0.1688 T22: 0.0828 REMARK 3 T33: 0.0915 T12: 0.0050 REMARK 3 T13: -0.0250 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.4550 L22: 1.1770 REMARK 3 L33: 0.3256 L12: -0.3153 REMARK 3 L13: 0.0213 L23: 0.2318 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: -0.0413 S13: 0.1569 REMARK 3 S21: 0.1560 S22: -0.0259 S23: -0.0609 REMARK 3 S31: -0.0627 S32: 0.0804 S33: -0.0186 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V712 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48026 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX (1.11.1_2575) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MANGANESE CHLORIDE, TRIS-HCL (PH REMARK 280 8.5), 12% (V/V) PEG 4000, 2 MM TRIS(2-CARBOXYETHYL) PHOSPHINE REMARK 280 (TCEP), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.18350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.18350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 546 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 GLN A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 SER A 71 REMARK 465 GLU A 72 REMARK 465 THR A 73 REMARK 465 LEU A 74 REMARK 465 ARG A 75 REMARK 465 ASN A 76 REMARK 465 LYS A 77 REMARK 465 GLY A 78 REMARK 465 GLU A 79 REMARK 465 ARG A 151 REMARK 465 PHE A 152 REMARK 465 HIS A 153 REMARK 465 MET B -13 REMARK 465 GLY B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 SER B -3 REMARK 465 GLN B -2 REMARK 465 ASP B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 HIS B 70 REMARK 465 SER B 71 REMARK 465 GLU B 72 REMARK 465 THR B 73 REMARK 465 LEU B 74 REMARK 465 ARG B 75 REMARK 465 ASN B 76 REMARK 465 LYS B 77 REMARK 465 GLY B 78 REMARK 465 GLU B 79 REMARK 465 ARG B 80 REMARK 465 PRO B 81 REMARK 465 ASN B 82 REMARK 465 GLY B 120 REMARK 465 ASP B 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 172 -15.90 -149.57 REMARK 500 GLN A 210 -112.42 53.52 REMARK 500 HIS A 282 -169.61 -127.30 REMARK 500 HIS B 68 10.26 -150.23 REMARK 500 GLN B 124 41.22 -92.02 REMARK 500 GLN B 210 -111.31 49.42 REMARK 500 HIS B 282 -164.37 -123.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 55 OD1 REMARK 620 2 HIS A 68 NE2 96.0 REMARK 620 3 HIS A 69 NE2 93.9 87.2 REMARK 620 4 ASP A 121 OD2 170.7 91.8 91.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 55 OD1 REMARK 620 2 HIS B 68 NE2 93.6 REMARK 620 3 HIS B 69 NE2 81.1 83.4 REMARK 620 N 1 2 DBREF 7D62 A 1 310 UNP Q9KLZ6 Q9KLZ6_VIBCH 1 310 DBREF 7D62 B 1 310 UNP Q9KLZ6 Q9KLZ6_VIBCH 1 310 SEQADV 7D62 MET A -13 UNP Q9KLZ6 INITIATING METHIONINE SEQADV 7D62 GLY A -12 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 SER A -11 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 SER A -10 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 HIS A -9 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 HIS A -8 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 HIS A -7 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 HIS A -6 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 HIS A -5 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 HIS A -4 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 SER A -3 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 GLN A -2 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 ASP A -1 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 PRO A 0 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 MET B -13 UNP Q9KLZ6 INITIATING METHIONINE SEQADV 7D62 GLY B -12 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 SER B -11 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 SER B -10 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 HIS B -9 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 HIS B -8 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 HIS B -7 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 HIS B -6 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 HIS B -5 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 HIS B -4 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 SER B -3 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 GLN B -2 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 ASP B -1 UNP Q9KLZ6 EXPRESSION TAG SEQADV 7D62 PRO B 0 UNP Q9KLZ6 EXPRESSION TAG SEQRES 1 A 324 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 324 PRO MET SER SER LEU LYS TYR ARG LEU VAL THR ARG SER SEQRES 3 A 324 ASP PHE ASP GLY LEU VAL CYS ALA VAL LEU LEU LYS SER SEQRES 4 A 324 ILE GLU LEU ILE ASP ASP ILE GLN PHE VAL HIS PRO LYS SEQRES 5 A 324 ASP MET GLN ASP GLY LYS VAL PRO ILE THR GLU ARG ASP SEQRES 6 A 324 ILE ILE THR ASN LEU PRO TYR VAL ALA ASN ALA HIS LEU SEQRES 7 A 324 VAL PHE ASP HIS HIS HIS SER GLU THR LEU ARG ASN LYS SEQRES 8 A 324 GLY GLU ARG PRO ASN HIS ILE ILE ASN PRO ASN ALA PRO SEQRES 9 A 324 SER ALA ALA ARG VAL VAL TRP GLU HIS TYR GLY GLY THR SEQRES 10 A 324 LYS THR PHE PRO PHE GLU TRP VAL GLU MET MET GLU ALA SEQRES 11 A 324 VAL ASP LYS GLY ASP SER ALA GLN PHE THR ARG ASP GLU SEQRES 12 A 324 VAL LEU ASP SER THR GLY TRP ASN LEU LEU ASN PHE LEU SEQRES 13 A 324 MET ASP ALA ARG THR GLY LEU GLY ARG PHE HIS ASN PHE SEQRES 14 A 324 ARG ILE SER ASN TYR ASN LEU MET MET ALA LEU ILE ASP SEQRES 15 A 324 HIS CYS THR HIS ALA SER ILE ASP GLU ILE LEU GLN LEU SEQRES 16 A 324 PRO ASP VAL LYS GLU ARG VAL GLU LEU TYR ARG LYS HIS SEQRES 17 A 324 GLU THR LEU PHE LYS GLU GLN ILE GLN ARG CYS GLY LYS SEQRES 18 A 324 VAL TYR GLN ASN LEU VAL LEU LEU ASP LEU THR GLU GLU SEQRES 19 A 324 GLU THR ILE TYR ALA GLY ASN ARG PHE ILE ILE TYR ALA SEQRES 20 A 324 LEU TYR PRO GLN CYS ASN ILE SER ILE HIS LYS MET TRP SEQRES 21 A 324 GLY PHE GLN LYS GLN ASN ILE VAL PHE ALA THR GLY LYS SEQRES 22 A 324 SER ILE PHE ASP ARG SER SER ARG THR ASN ILE GLY GLU SEQRES 23 A 324 LEU MET LEU LYS TYR GLY GLY GLY GLY HIS ALA ALA ALA SEQRES 24 A 324 GLY THR CYS GLN ILE ALA ILE GLU ASP ALA ASP ARG VAL SEQRES 25 A 324 GLU LYS ALA LEU ILE THR GLN ILE ASN ALA ASP GLY SEQRES 1 B 324 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 324 PRO MET SER SER LEU LYS TYR ARG LEU VAL THR ARG SER SEQRES 3 B 324 ASP PHE ASP GLY LEU VAL CYS ALA VAL LEU LEU LYS SER SEQRES 4 B 324 ILE GLU LEU ILE ASP ASP ILE GLN PHE VAL HIS PRO LYS SEQRES 5 B 324 ASP MET GLN ASP GLY LYS VAL PRO ILE THR GLU ARG ASP SEQRES 6 B 324 ILE ILE THR ASN LEU PRO TYR VAL ALA ASN ALA HIS LEU SEQRES 7 B 324 VAL PHE ASP HIS HIS HIS SER GLU THR LEU ARG ASN LYS SEQRES 8 B 324 GLY GLU ARG PRO ASN HIS ILE ILE ASN PRO ASN ALA PRO SEQRES 9 B 324 SER ALA ALA ARG VAL VAL TRP GLU HIS TYR GLY GLY THR SEQRES 10 B 324 LYS THR PHE PRO PHE GLU TRP VAL GLU MET MET GLU ALA SEQRES 11 B 324 VAL ASP LYS GLY ASP SER ALA GLN PHE THR ARG ASP GLU SEQRES 12 B 324 VAL LEU ASP SER THR GLY TRP ASN LEU LEU ASN PHE LEU SEQRES 13 B 324 MET ASP ALA ARG THR GLY LEU GLY ARG PHE HIS ASN PHE SEQRES 14 B 324 ARG ILE SER ASN TYR ASN LEU MET MET ALA LEU ILE ASP SEQRES 15 B 324 HIS CYS THR HIS ALA SER ILE ASP GLU ILE LEU GLN LEU SEQRES 16 B 324 PRO ASP VAL LYS GLU ARG VAL GLU LEU TYR ARG LYS HIS SEQRES 17 B 324 GLU THR LEU PHE LYS GLU GLN ILE GLN ARG CYS GLY LYS SEQRES 18 B 324 VAL TYR GLN ASN LEU VAL LEU LEU ASP LEU THR GLU GLU SEQRES 19 B 324 GLU THR ILE TYR ALA GLY ASN ARG PHE ILE ILE TYR ALA SEQRES 20 B 324 LEU TYR PRO GLN CYS ASN ILE SER ILE HIS LYS MET TRP SEQRES 21 B 324 GLY PHE GLN LYS GLN ASN ILE VAL PHE ALA THR GLY LYS SEQRES 22 B 324 SER ILE PHE ASP ARG SER SER ARG THR ASN ILE GLY GLU SEQRES 23 B 324 LEU MET LEU LYS TYR GLY GLY GLY GLY HIS ALA ALA ALA SEQRES 24 B 324 GLY THR CYS GLN ILE ALA ILE GLU ASP ALA ASP ARG VAL SEQRES 25 B 324 GLU LYS ALA LEU ILE THR GLN ILE ASN ALA ASP GLY HET MN A 401 1 HET SO4 A 402 5 HET SO4 A 403 5 HET MN B 401 1 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION FORMUL 3 MN 2(MN 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *74(H2 O) HELIX 1 AA1 ASP A 13 ILE A 26 1 14 HELIX 2 AA2 HIS A 36 ASP A 42 1 7 HELIX 3 AA3 SER A 91 TYR A 100 1 10 HELIX 4 AA4 GLY A 101 THR A 105 5 5 HELIX 5 AA5 PRO A 107 GLU A 109 5 3 HELIX 6 AA6 TRP A 110 ASP A 118 1 9 HELIX 7 AA7 THR A 126 LEU A 131 1 6 HELIX 8 AA8 THR A 134 ASP A 144 1 11 HELIX 9 AA9 ALA A 145 GLY A 148 5 4 HELIX 10 AB1 SER A 158 THR A 171 1 14 HELIX 11 AB2 SER A 174 GLN A 180 1 7 HELIX 12 AB3 LEU A 181 CYS A 205 1 25 HELIX 13 AB4 PHE A 229 TYR A 235 1 7 HELIX 14 AB5 PHE A 248 GLN A 251 5 4 HELIX 15 AB6 ASN A 269 LYS A 276 1 8 HELIX 16 AB7 ALA A 291 GLU A 293 5 3 HELIX 17 AB8 ASP A 294 GLY A 310 1 17 HELIX 18 AB9 ASP B 13 ILE B 26 1 14 HELIX 19 AC1 HIS B 36 GLY B 43 1 8 HELIX 20 AC2 SER B 91 TYR B 100 1 10 HELIX 21 AC3 GLY B 101 THR B 105 5 5 HELIX 22 AC4 GLU B 109 ASP B 118 1 10 HELIX 23 AC5 THR B 126 LEU B 131 1 6 HELIX 24 AC6 THR B 134 ASP B 144 1 11 HELIX 25 AC7 ALA B 145 GLY B 148 5 4 HELIX 26 AC8 SER B 158 CYS B 170 1 13 HELIX 27 AC9 SER B 174 LEU B 179 1 6 HELIX 28 AD1 LEU B 181 CYS B 205 1 25 HELIX 29 AD2 PHE B 229 TYR B 235 1 7 HELIX 30 AD3 PHE B 248 GLN B 251 5 4 HELIX 31 AD4 ASN B 269 TYR B 277 1 9 HELIX 32 AD5 ALA B 291 GLU B 293 5 3 HELIX 33 AD6 ASP B 294 GLY B 310 1 17 SHEET 1 AA1 5 ILE A 29 PHE A 34 0 SHEET 2 AA1 5 TYR A 6 THR A 10 1 N LEU A 8 O ASP A 31 SHEET 3 AA1 5 ASP A 51 THR A 54 1 O ILE A 52 N ARG A 7 SHEET 4 AA1 5 LEU A 64 ASP A 67 1 O PHE A 66 N ILE A 53 SHEET 5 AA1 5 HIS A 83 ILE A 85 1 O ILE A 84 N VAL A 65 SHEET 1 AA2 6 GLY A 206 TYR A 209 0 SHEET 2 AA2 6 LEU A 212 ASP A 216 -1 O LEU A 212 N TYR A 209 SHEET 3 AA2 6 ILE A 240 TRP A 246 1 O ILE A 242 N LEU A 215 SHEET 4 AA2 6 ILE A 253 LYS A 259 -1 O VAL A 254 N MET A 245 SHEET 5 AA2 6 ALA A 285 ILE A 290 -1 O ILE A 290 N ILE A 253 SHEET 6 AA2 6 GLY A 280 HIS A 282 -1 N HIS A 282 O ALA A 285 SHEET 1 AA3 5 ILE B 29 PHE B 34 0 SHEET 2 AA3 5 TYR B 6 THR B 10 1 N LEU B 8 O GLN B 33 SHEET 3 AA3 5 ASP B 51 THR B 54 1 O ILE B 52 N VAL B 9 SHEET 4 AA3 5 LEU B 64 ASP B 67 1 O PHE B 66 N ILE B 53 SHEET 5 AA3 5 ILE B 84 ILE B 85 1 O ILE B 84 N VAL B 65 SHEET 1 AA4 6 GLY B 206 TYR B 209 0 SHEET 2 AA4 6 LEU B 212 ASP B 216 -1 O LEU B 212 N TYR B 209 SHEET 3 AA4 6 ILE B 240 TRP B 246 1 O ILE B 242 N LEU B 215 SHEET 4 AA4 6 ILE B 253 LYS B 259 -1 O VAL B 254 N MET B 245 SHEET 5 AA4 6 ALA B 285 ILE B 290 -1 O ILE B 290 N ILE B 253 SHEET 6 AA4 6 GLY B 280 GLY B 281 -1 N GLY B 280 O THR B 287 LINK OD1 ASN A 55 MN MN A 401 1555 1555 2.27 LINK NE2 HIS A 68 MN MN A 401 1555 1555 2.16 LINK NE2 HIS A 69 MN MN A 401 1555 1555 2.38 LINK OD2 ASP A 121 MN MN A 401 1555 1555 2.26 LINK OD1 ASN B 55 MN MN B 401 1555 1555 2.27 LINK NE2 HIS B 68 MN MN B 401 1555 1555 2.28 LINK NE2 HIS B 69 MN MN B 401 1555 1555 2.60 CRYST1 68.367 148.830 58.845 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014627 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006719 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016994 0.00000