HEADER HYDROLASE 29-SEP-20 7D6A TITLE CRYSTAL STRUCTURE OF ORYZA SATIVA OS4BGLU18 MONOLIGNOL BETA- TITLE 2 GLUCOSIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE 18; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OS4BGLU18; COMPND 5 EC: 3.2.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: BGLU18, OS04G0513900, LOC_OS04G43410, OSJNBA0004N05.26, SOURCE 6 OSJNBB0070J16.3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MONOLIGNOL BETA-GLUCOSIDASE, OS4BGLU18, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BAIYA,S.PENGTHAISONG,J.R.KETUDAT CAIRNS REVDAT 3 29-NOV-23 7D6A 1 REMARK REVDAT 2 10-FEB-21 7D6A 1 JRNL REVDAT 1 13-JAN-21 7D6A 0 JRNL AUTH S.BAIYA,S.PENGTHAISONG,S.KITJARUWANKUL,J.R.KETUDAT CAIRNS JRNL TITL STRUCTURAL ANALYSIS OF RICE OS4BGLU18 MONOLIGNOL JRNL TITL 2 BETA-GLUCOSIDASE. JRNL REF PLOS ONE V. 16 41325 2021 JRNL REFN ESSN 1932-6203 JRNL PMID 33471829 JRNL DOI 10.1371/JOURNAL.PONE.0241325 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 91860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6691 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 340 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7715 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.867 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8117 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7326 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11017 ; 1.379 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16845 ; 0.949 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 966 ; 6.037 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 420 ;32.884 ;23.095 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1236 ;11.526 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 61 ;17.943 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1117 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9247 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2050 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 24 A 500 4 REMARK 3 1 B 24 B 500 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 7293 ; 0.340 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 7293 ; 1.660 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7D6A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300012539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96808 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2RGL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 0.1M MES, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 288 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.06700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.82450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.87950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 103.82450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.06700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.87950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 24 REMARK 465 MET A 25 REMARK 465 LEU A 501 REMARK 465 HIS A 502 REMARK 465 GLU A 503 REMARK 465 ASN A 504 REMARK 465 GLN A 505 REMARK 465 LEU B 501 REMARK 465 HIS B 502 REMARK 465 GLU B 503 REMARK 465 ASN B 504 REMARK 465 GLN B 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 416 CG OD1 OD2 REMARK 470 ASP B 416 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 -54.62 -122.04 REMARK 500 ALA A 80 -128.52 55.18 REMARK 500 TYR A 149 -17.02 75.82 REMARK 500 TYR A 159 15.16 -141.87 REMARK 500 ALA A 161 -113.86 45.96 REMARK 500 ALA A 228 -51.35 -131.71 REMARK 500 GLU A 289 -94.98 -101.91 REMARK 500 LYS A 328 -128.74 56.76 REMARK 500 THR A 380 -9.50 78.74 REMARK 500 ASP A 427 52.94 -114.54 REMARK 500 TRP A 465 -121.77 49.54 REMARK 500 ALA B 80 -127.75 55.29 REMARK 500 TYR B 149 -18.20 79.13 REMARK 500 TYR B 159 18.12 -144.48 REMARK 500 ALA B 161 -111.40 43.81 REMARK 500 GLU B 289 -96.39 -96.77 REMARK 500 LYS B 328 -132.48 56.95 REMARK 500 THR B 380 -8.85 77.48 REMARK 500 ASP B 427 53.42 -116.44 REMARK 500 TRP B 465 -121.95 52.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1083 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B1145 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B1146 DISTANCE = 6.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 53 OE1 REMARK 620 2 HIS A 85 NE2 112.1 REMARK 620 3 ASP B 82 OD1 156.5 89.9 REMARK 620 4 ASP B 82 OD2 106.2 111.9 55.4 REMARK 620 5 HIS B 85 ND1 96.4 112.4 81.9 116.6 REMARK 620 N 1 2 3 4 DBREF 7D6A A 26 505 UNP Q7XSK0 BGL18_ORYSJ 26 505 DBREF 7D6A B 26 505 UNP Q7XSK0 BGL18_ORYSJ 26 505 SEQADV 7D6A ALA A 24 UNP Q7XSK0 EXPRESSION TAG SEQADV 7D6A MET A 25 UNP Q7XSK0 EXPRESSION TAG SEQADV 7D6A ALA B 24 UNP Q7XSK0 EXPRESSION TAG SEQADV 7D6A MET B 25 UNP Q7XSK0 EXPRESSION TAG SEQRES 1 A 482 ALA MET ALA ILE HIS ARG SER ASP PHE PRO ALA SER PHE SEQRES 2 A 482 LEU PHE GLY THR ALA THR SER SER TYR GLN ILE GLU GLY SEQRES 3 A 482 ALA TYR LEU GLU GLY ASN LYS SER LEU SER ASN TRP ASP SEQRES 4 A 482 VAL PHE THR HIS LEU PRO GLY ASN ILE LYS ASP GLY SER SEQRES 5 A 482 ASN GLY ASP ILE ALA ASP ASP HIS TYR HIS ARG TYR GLU SEQRES 6 A 482 GLU ASP VAL GLU LEU MET ASN SER LEU GLY VAL ASN ALA SEQRES 7 A 482 TYR ARG PHE SER ILE SER TRP SER ARG ILE LEU PRO LYS SEQRES 8 A 482 GLY ARG PHE GLY GLY VAL ASN PRO ALA GLY ILE ASP PHE SEQRES 9 A 482 TYR ASN LYS LEU ILE ASP SER ILE LEU LEU LYS GLY ILE SEQRES 10 A 482 GLN PRO PHE VAL THR LEU THR HIS TYR ASP ILE PRO GLN SEQRES 11 A 482 GLU LEU GLU ASP ARG TYR GLY ALA TRP LEU ASN ALA GLU SEQRES 12 A 482 ILE GLN SER ASP PHE GLY HIS PHE ALA ASP VAL CYS PHE SEQRES 13 A 482 GLY ALA PHE GLY ASP ARG VAL LYS TYR TRP THR THR PHE SEQRES 14 A 482 ASN GLU PRO ASN VAL ALA VAL ARG HIS GLY TYR MET LEU SEQRES 15 A 482 GLY THR TYR PRO PRO SER ARG CYS SER PRO PRO PHE GLY SEQRES 16 A 482 HIS CYS ALA ARG GLY GLY ASP SER HIS ALA GLU PRO TYR SEQRES 17 A 482 VAL ALA ALA HIS ASN VAL ILE LEU SER HIS ALA THR ALA SEQRES 18 A 482 ILE GLU ILE TYR LYS ARG LYS TYR GLN SER LYS GLN ARG SEQRES 19 A 482 GLY MET ILE GLY MET VAL LEU TYR SER THR TRP TYR GLU SEQRES 20 A 482 PRO LEU ARG ASP VAL PRO GLU ASP ARG LEU ALA THR GLU SEQRES 21 A 482 ARG ALA LEU ALA PHE GLU THR PRO TRP PHE LEU ASP PRO SEQRES 22 A 482 LEU VAL TYR GLY ASP TYR PRO PRO GLU MET ARG GLN ILE SEQRES 23 A 482 LEU GLY GLY ARG LEU PRO SER PHE SER PRO GLU ASP ARG SEQRES 24 A 482 ARG LYS LEU ARG TYR LYS LEU ASP PHE ILE GLY VAL ASN SEQRES 25 A 482 HIS TYR THR THR LEU TYR ALA ARG ASP CYS MET PHE SER SEQRES 26 A 482 ASP CYS PRO GLN GLY GLN GLU THR GLN HIS ALA LEU ALA SEQRES 27 A 482 ALA VAL THR GLY GLU SER ASN GLY LEU PRO ILE GLY THR SEQRES 28 A 482 PRO THR ALA MET PRO THR PHE TYR VAL VAL PRO ASP GLY SEQRES 29 A 482 ILE GLU LYS MET VAL LYS TYR PHE MET ARG ARG TYR ASN SEQRES 30 A 482 ASN LEU PRO MET PHE ILE THR GLU ASN GLY TYR ALA GLN SEQRES 31 A 482 GLY GLY ASP SER TYR THR ASP ALA GLU ASP TRP ILE ASP SEQRES 32 A 482 ASP GLU ASP ARG ILE GLU TYR LEU GLU GLY TYR LEU THR SEQRES 33 A 482 LYS LEU ALA LYS VAL ILE ARG ASP GLY ALA ASP VAL ARG SEQRES 34 A 482 GLY TYR PHE ALA TRP SER VAL VAL ASP ASN PHE GLU TRP SEQRES 35 A 482 LEU PHE GLY TYR THR LEU ARG PHE GLY LEU TYR TYR ILE SEQRES 36 A 482 ASP TYR ARG THR GLN GLU ARG SER PRO LYS LEU SER ALA SEQRES 37 A 482 LEU TRP TYR LYS GLU PHE LEU GLN ASN LEU HIS GLU ASN SEQRES 38 A 482 GLN SEQRES 1 B 482 ALA MET ALA ILE HIS ARG SER ASP PHE PRO ALA SER PHE SEQRES 2 B 482 LEU PHE GLY THR ALA THR SER SER TYR GLN ILE GLU GLY SEQRES 3 B 482 ALA TYR LEU GLU GLY ASN LYS SER LEU SER ASN TRP ASP SEQRES 4 B 482 VAL PHE THR HIS LEU PRO GLY ASN ILE LYS ASP GLY SER SEQRES 5 B 482 ASN GLY ASP ILE ALA ASP ASP HIS TYR HIS ARG TYR GLU SEQRES 6 B 482 GLU ASP VAL GLU LEU MET ASN SER LEU GLY VAL ASN ALA SEQRES 7 B 482 TYR ARG PHE SER ILE SER TRP SER ARG ILE LEU PRO LYS SEQRES 8 B 482 GLY ARG PHE GLY GLY VAL ASN PRO ALA GLY ILE ASP PHE SEQRES 9 B 482 TYR ASN LYS LEU ILE ASP SER ILE LEU LEU LYS GLY ILE SEQRES 10 B 482 GLN PRO PHE VAL THR LEU THR HIS TYR ASP ILE PRO GLN SEQRES 11 B 482 GLU LEU GLU ASP ARG TYR GLY ALA TRP LEU ASN ALA GLU SEQRES 12 B 482 ILE GLN SER ASP PHE GLY HIS PHE ALA ASP VAL CYS PHE SEQRES 13 B 482 GLY ALA PHE GLY ASP ARG VAL LYS TYR TRP THR THR PHE SEQRES 14 B 482 ASN GLU PRO ASN VAL ALA VAL ARG HIS GLY TYR MET LEU SEQRES 15 B 482 GLY THR TYR PRO PRO SER ARG CYS SER PRO PRO PHE GLY SEQRES 16 B 482 HIS CYS ALA ARG GLY GLY ASP SER HIS ALA GLU PRO TYR SEQRES 17 B 482 VAL ALA ALA HIS ASN VAL ILE LEU SER HIS ALA THR ALA SEQRES 18 B 482 ILE GLU ILE TYR LYS ARG LYS TYR GLN SER LYS GLN ARG SEQRES 19 B 482 GLY MET ILE GLY MET VAL LEU TYR SER THR TRP TYR GLU SEQRES 20 B 482 PRO LEU ARG ASP VAL PRO GLU ASP ARG LEU ALA THR GLU SEQRES 21 B 482 ARG ALA LEU ALA PHE GLU THR PRO TRP PHE LEU ASP PRO SEQRES 22 B 482 LEU VAL TYR GLY ASP TYR PRO PRO GLU MET ARG GLN ILE SEQRES 23 B 482 LEU GLY GLY ARG LEU PRO SER PHE SER PRO GLU ASP ARG SEQRES 24 B 482 ARG LYS LEU ARG TYR LYS LEU ASP PHE ILE GLY VAL ASN SEQRES 25 B 482 HIS TYR THR THR LEU TYR ALA ARG ASP CYS MET PHE SER SEQRES 26 B 482 ASP CYS PRO GLN GLY GLN GLU THR GLN HIS ALA LEU ALA SEQRES 27 B 482 ALA VAL THR GLY GLU SER ASN GLY LEU PRO ILE GLY THR SEQRES 28 B 482 PRO THR ALA MET PRO THR PHE TYR VAL VAL PRO ASP GLY SEQRES 29 B 482 ILE GLU LYS MET VAL LYS TYR PHE MET ARG ARG TYR ASN SEQRES 30 B 482 ASN LEU PRO MET PHE ILE THR GLU ASN GLY TYR ALA GLN SEQRES 31 B 482 GLY GLY ASP SER TYR THR ASP ALA GLU ASP TRP ILE ASP SEQRES 32 B 482 ASP GLU ASP ARG ILE GLU TYR LEU GLU GLY TYR LEU THR SEQRES 33 B 482 LYS LEU ALA LYS VAL ILE ARG ASP GLY ALA ASP VAL ARG SEQRES 34 B 482 GLY TYR PHE ALA TRP SER VAL VAL ASP ASN PHE GLU TRP SEQRES 35 B 482 LEU PHE GLY TYR THR LEU ARG PHE GLY LEU TYR TYR ILE SEQRES 36 B 482 ASP TYR ARG THR GLN GLU ARG SER PRO LYS LEU SER ALA SEQRES 37 B 482 LEU TRP TYR LYS GLU PHE LEU GLN ASN LEU HIS GLU ASN SEQRES 38 B 482 GLN HET MES A 601 12 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET GOL A 606 6 HET GOL A 607 6 HET GOL A 608 6 HET GOL A 609 6 HET ZN B 601 1 HET MES B 602 12 HET GOL B 603 6 HET GOL B 604 6 HET GOL B 605 6 HET GOL B 606 6 HET GOL B 607 6 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MES 2(C6 H13 N O4 S) FORMUL 4 GOL 13(C3 H8 O3) FORMUL 12 ZN ZN 2+ FORMUL 19 HOH *830(H2 O) HELIX 1 AA1 HIS A 28 PHE A 32 5 5 HELIX 2 AA2 SER A 43 GLU A 48 1 6 HELIX 3 AA3 SER A 59 HIS A 66 1 8 HELIX 4 AA4 ASP A 82 GLY A 98 1 17 HELIX 5 AA5 SER A 107 LEU A 112 1 6 HELIX 6 AA6 ASN A 121 LYS A 138 1 18 HELIX 7 AA7 PRO A 152 GLY A 160 1 9 HELIX 8 AA8 ALA A 161 ASN A 164 5 4 HELIX 9 AA9 ALA A 165 GLY A 183 1 19 HELIX 10 AB1 GLU A 194 MET A 204 1 11 HELIX 11 AB2 ALA A 228 TYR A 252 1 25 HELIX 12 AB3 TYR A 252 ARG A 257 1 6 HELIX 13 AB4 VAL A 275 PHE A 288 1 14 HELIX 14 AB5 GLU A 289 GLY A 300 1 12 HELIX 15 AB6 PRO A 303 GLY A 311 1 9 HELIX 16 AB7 GLY A 312 LEU A 314 5 3 HELIX 17 AB8 SER A 318 ARG A 326 1 9 HELIX 18 AB9 PRO A 385 ASN A 400 1 16 HELIX 19 AC1 ASP A 420 ASP A 426 1 7 HELIX 20 AC2 ASP A 427 ASP A 447 1 21 HELIX 21 AC3 GLU A 464 LEU A 471 5 8 HELIX 22 AC4 LYS A 488 ASN A 500 1 13 HELIX 23 AC5 HIS B 28 PHE B 32 5 5 HELIX 24 AC6 SER B 43 GLU B 48 1 6 HELIX 25 AC7 SER B 59 HIS B 66 1 8 HELIX 26 AC8 ASP B 82 GLY B 98 1 17 HELIX 27 AC9 SER B 107 LEU B 112 1 6 HELIX 28 AD1 LYS B 114 GLY B 118 5 5 HELIX 29 AD2 ASN B 121 LYS B 138 1 18 HELIX 30 AD3 PRO B 152 GLY B 160 1 9 HELIX 31 AD4 ALA B 161 ASN B 164 5 4 HELIX 32 AD5 ALA B 165 GLY B 183 1 19 HELIX 33 AD6 GLU B 194 MET B 204 1 11 HELIX 34 AD7 ALA B 228 TYR B 252 1 25 HELIX 35 AD8 TYR B 252 ARG B 257 1 6 HELIX 36 AD9 VAL B 275 PHE B 288 1 14 HELIX 37 AE1 GLU B 289 GLY B 300 1 12 HELIX 38 AE2 PRO B 303 GLY B 311 1 9 HELIX 39 AE3 GLY B 312 LEU B 314 5 3 HELIX 40 AE4 SER B 318 ARG B 326 1 9 HELIX 41 AE5 PRO B 385 TYR B 399 1 15 HELIX 42 AE6 ASP B 420 ASP B 426 1 7 HELIX 43 AE7 ASP B 427 ASP B 447 1 21 HELIX 44 AE8 GLU B 464 LEU B 471 5 8 HELIX 45 AE9 LYS B 488 ASN B 500 1 13 SHEET 1 AA1 9 LEU A 37 ALA A 41 0 SHEET 2 AA1 9 ALA A 101 SER A 105 1 O ARG A 103 N THR A 40 SHEET 3 AA1 9 GLN A 141 THR A 147 1 O THR A 145 N PHE A 104 SHEET 4 AA1 9 TYR A 188 ASN A 193 1 O THR A 190 N LEU A 146 SHEET 5 AA1 9 MET A 259 TYR A 265 1 O GLY A 261 N TRP A 189 SHEET 6 AA1 9 PHE A 331 ASN A 335 1 O GLY A 333 N MET A 262 SHEET 7 AA1 9 MET A 404 ASN A 409 1 O PHE A 405 N VAL A 334 SHEET 8 AA1 9 VAL A 451 TRP A 457 1 O ARG A 452 N MET A 404 SHEET 9 AA1 9 LEU A 37 ALA A 41 1 N LEU A 37 O TYR A 454 SHEET 1 AA2 3 TRP A 268 PRO A 271 0 SHEET 2 AA2 3 THR A 339 ASP A 344 1 O ALA A 342 N GLU A 270 SHEET 3 AA2 3 ALA A 361 THR A 364 -1 O THR A 364 N TYR A 341 SHEET 1 AA3 2 GLU A 366 SER A 367 0 SHEET 2 AA3 2 LEU A 370 PRO A 371 -1 O LEU A 370 N SER A 367 SHEET 1 AA4 2 THR A 374 PRO A 375 0 SHEET 2 AA4 2 TYR A 382 VAL A 383 -1 O VAL A 383 N THR A 374 SHEET 1 AA5 2 TYR A 476 ASP A 479 0 SHEET 2 AA5 2 GLU A 484 PRO A 487 -1 O SER A 486 N TYR A 477 SHEET 1 AA6 9 LEU B 37 ALA B 41 0 SHEET 2 AA6 9 ALA B 101 SER B 105 1 O ARG B 103 N THR B 40 SHEET 3 AA6 9 GLN B 141 THR B 147 1 O THR B 145 N PHE B 104 SHEET 4 AA6 9 TYR B 188 ASN B 193 1 O THR B 190 N LEU B 146 SHEET 5 AA6 9 MET B 259 TYR B 265 1 O GLY B 261 N TRP B 189 SHEET 6 AA6 9 PHE B 331 ASN B 335 1 O GLY B 333 N MET B 262 SHEET 7 AA6 9 MET B 404 GLU B 408 1 O PHE B 405 N VAL B 334 SHEET 8 AA6 9 VAL B 451 TRP B 457 1 O ARG B 452 N MET B 404 SHEET 9 AA6 9 LEU B 37 ALA B 41 1 N GLY B 39 O TYR B 454 SHEET 1 AA7 3 TRP B 268 PRO B 271 0 SHEET 2 AA7 3 THR B 339 ASP B 344 1 O ALA B 342 N GLU B 270 SHEET 3 AA7 3 ALA B 361 THR B 364 -1 O THR B 364 N TYR B 341 SHEET 1 AA8 2 GLU B 366 SER B 367 0 SHEET 2 AA8 2 LEU B 370 PRO B 371 -1 O LEU B 370 N SER B 367 SHEET 1 AA9 2 THR B 374 PRO B 375 0 SHEET 2 AA9 2 TYR B 382 VAL B 383 -1 O VAL B 383 N THR B 374 SHEET 1 AB1 2 TYR B 476 ILE B 478 0 SHEET 2 AB1 2 ARG B 485 PRO B 487 -1 O SER B 486 N TYR B 477 SSBOND 1 CYS A 213 CYS A 220 1555 1555 2.08 SSBOND 2 CYS A 345 CYS A 350 1555 1555 2.07 SSBOND 3 CYS B 213 CYS B 220 1555 1555 2.11 SSBOND 4 CYS B 345 CYS B 350 1555 1555 2.03 LINK OE1 GLU A 53 ZN ZN B 601 1555 1555 1.92 LINK NE2 HIS A 85 ZN ZN B 601 1555 1555 2.06 LINK OD1 ASP B 82 ZN ZN B 601 1555 1555 2.59 LINK OD2 ASP B 82 ZN ZN B 601 1555 1555 1.94 LINK ND1 HIS B 85 ZN ZN B 601 1555 1555 2.13 CISPEP 1 PRO A 209 PRO A 210 0 11.13 CISPEP 2 PRO A 215 PRO A 216 0 5.05 CISPEP 3 TRP A 457 SER A 458 0 2.04 CISPEP 4 PRO B 209 PRO B 210 0 11.04 CISPEP 5 PRO B 215 PRO B 216 0 7.72 CISPEP 6 TRP B 457 SER B 458 0 3.62 CRYST1 52.134 83.759 207.649 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019181 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004816 0.00000