HEADER OXIDOREDUCTASE 02-OCT-20 7D6X TITLE MYCOBACTERIUM SMEGMATIS SDH1 COMPLEX IN THE APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE DEHYDROGENASE SUBUNIT A; COMPND 3 CHAIN: A; COMPND 4 EC: 1.3.-.-; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FUMARATE REDUCTASE IRON-SULFUR SUBUNIT; COMPND 7 CHAIN: B; COMPND 8 MOL_ID: 3; COMPND 9 MOLECULE: SUCCINATE DEHYDROGENASE (MEMBRANE ANCHOR SUBUNIT); COMPND 10 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS; SOURCE 6 ORGANISM_TAXID: 1772; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS; SOURCE 9 ORGANISM_TAXID: 1772 KEYWDS SUCCINATE DEHYDROGENASE, ELECTRON TRANSPORT CHAIN, MYCOBACTERIUM KEYWDS 2 SMEGMATIS, SDH1, SQR, OXIDOREDUCTASE EXPDTA ELECTRON MICROSCOPY AUTHOR X.ZHOU,Y.GAO,Q.WANG,H.GONG,Z.RAO REVDAT 2 16-FEB-22 7D6X 1 JRNL REVDAT 1 07-APR-21 7D6X 0 JRNL AUTH X.ZHOU,Y.GAO,W.WANG,X.YANG,X.YANG,F.LIU,Y.TANG,S.M.LAM, JRNL AUTH 2 G.SHUI,L.YU,C.TIAN,L.W.GUDDAT,Q.WANG,Z.RAO,H.GONG JRNL TITL ARCHITECTURE OF THE MYCOBACTERIAL SUCCINATE DEHYDROGENASE JRNL TITL 2 WITH A MEMBRANE-EMBEDDED RIESKE FES CLUSTER. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33876763 JRNL DOI 10.1073/PNAS.2022308118 REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.880 REMARK 3 NUMBER OF PARTICLES : 254341 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7D6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018874. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : MYCOBACTERIUM SMEGMATIS SDH1 REMARK 245 COMPLEX IN APO FORM REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 5.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : SUCCINATE DEHYDROGENASE REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 282 REMARK 465 PHE A 283 REMARK 465 MET A 284 REMARK 465 PHE A 285 REMARK 465 ASP A 286 REMARK 465 TYR A 287 REMARK 465 ILE A 288 REMARK 465 PRO A 289 REMARK 465 SER A 290 REMARK 465 VAL A 291 REMARK 465 PHE A 292 REMARK 465 LYS A 293 REMARK 465 GLY A 294 REMARK 465 GLN A 295 REMARK 465 TYR A 296 REMARK 465 ALA A 297 REMARK 465 GLU A 298 REMARK 465 THR A 299 REMARK 465 GLU A 300 REMARK 465 GLU A 301 REMARK 465 GLU A 302 REMARK 465 ALA A 303 REMARK 465 ASP A 304 REMARK 465 GLN A 305 REMARK 465 TRP A 306 REMARK 465 LEU A 307 REMARK 465 LYS A 308 REMARK 465 ASP A 309 REMARK 465 ASN A 310 REMARK 465 ASP A 311 REMARK 465 SER A 312 REMARK 465 ALA A 313 REMARK 465 ARG A 314 REMARK 465 ARG A 315 REMARK 465 GLU A 632 REMARK 465 ARG A 633 REMARK 465 LYS A 634 REMARK 465 GLY A 635 REMARK 465 MET B 1 REMARK 465 TRP B 241 REMARK 465 LEU B 242 REMARK 465 GLY B 243 REMARK 465 ASN B 244 REMARK 465 LYS B 245 REMARK 465 LEU B 246 REMARK 465 PHE B 247 REMARK 465 ARG B 248 REMARK 465 ARG B 249 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ALA C 3 REMARK 465 PRO C 4 REMARK 465 THR C 5 REMARK 465 ALA C 6 REMARK 465 ASP C 7 REMARK 465 ARG C 8 REMARK 465 ARG C 9 REMARK 465 HIS C 274 REMARK 465 HIS C 275 REMARK 465 HIS C 276 REMARK 465 HIS C 277 REMARK 465 HIS C 278 REMARK 465 HIS C 279 REMARK 465 HIS C 280 REMARK 465 HIS C 281 REMARK 465 HIS C 282 REMARK 465 HIS C 283 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 228 CG OD1 OD2 REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 LEU A 319 CG CD1 CD2 REMARK 470 ARG A 322 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 334 CG CD CE NZ REMARK 470 ARG A 337 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 341 CB CG ND1 CD2 CE1 NE2 REMARK 470 MET A 352 CG SD CE REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 ASP C 255 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 46 C8M FAD A 701 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 54 CB - CA - C ANGL. DEV. = -22.2 DEGREES REMARK 500 CYS B 54 N - CA - C ANGL. DEV. = 37.4 DEGREES REMARK 500 LYS B 55 N - CA - CB ANGL. DEV. = 11.1 DEGREES REMARK 500 GLY B 57 N - CA - C ANGL. DEV. = 15.3 DEGREES REMARK 500 LYS B 58 N - CA - CB ANGL. DEV. = -27.6 DEGREES REMARK 500 CYS B 59 N - CA - C ANGL. DEV. = 22.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 169 79.31 -100.92 REMARK 500 ASP A 180 -66.20 -94.82 REMARK 500 ASP A 181 32.84 -140.07 REMARK 500 LEU A 207 -71.29 -65.79 REMARK 500 ASP A 271 -158.28 -148.87 REMARK 500 LEU A 275 132.97 -177.22 REMARK 500 LYS A 276 45.37 -146.06 REMARK 500 ASN A 277 -5.29 73.15 REMARK 500 PRO A 317 56.63 -68.54 REMARK 500 LEU A 319 -2.52 64.80 REMARK 500 ARG A 351 -158.12 -147.06 REMARK 500 ALA A 354 -36.83 -134.29 REMARK 500 ALA A 402 -167.25 -73.69 REMARK 500 ALA A 404 -65.91 -95.17 REMARK 500 PRO A 471 7.00 -67.65 REMARK 500 LYS A 475 71.04 57.89 REMARK 500 GLU A 477 71.79 44.21 REMARK 500 GLU A 559 149.78 -173.54 REMARK 500 ARG A 561 115.13 -160.08 REMARK 500 GLU A 571 92.78 -68.92 REMARK 500 MET A 572 146.94 -38.32 REMARK 500 ALA A 574 -164.63 -79.47 REMARK 500 TRP A 576 46.69 -82.28 REMARK 500 PRO A 590 -51.87 -28.62 REMARK 500 ARG A 606 -81.06 -74.28 REMARK 500 PRO A 624 63.05 -67.39 REMARK 500 LEU A 627 -0.37 61.34 REMARK 500 ASP B 14 -167.62 -127.73 REMARK 500 VAL B 50 -52.16 -126.64 REMARK 500 ARG B 51 69.22 61.86 REMARK 500 ASN B 53 -54.70 -122.29 REMARK 500 CYS B 59 -58.94 -127.42 REMARK 500 CYS B 62 35.39 -82.69 REMARK 500 ASN B 67 44.71 -143.39 REMARK 500 MET B 78 -5.45 68.20 REMARK 500 ARG B 113 48.15 -92.02 REMARK 500 LYS B 122 45.53 -91.76 REMARK 500 ARG B 190 -3.77 70.82 REMARK 500 THR B 206 104.89 -59.88 REMARK 500 LYS B 207 -71.75 -56.90 REMARK 500 CYS B 208 -11.81 60.73 REMARK 500 THR C 11 -66.03 -97.36 REMARK 500 PRO C 22 44.18 -86.67 REMARK 500 PRO C 94 48.88 -83.17 REMARK 500 TRP C 95 -8.95 64.69 REMARK 500 THR C 113 49.36 -91.53 REMARK 500 PRO C 129 117.77 -37.28 REMARK 500 GLU C 144 50.95 -91.44 REMARK 500 PHE C 177 38.00 -98.02 REMARK 500 LEU C 187 -12.51 74.07 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 401 ALA A 402 -147.44 REMARK 500 ASP A 589 PRO A 590 -131.11 REMARK 500 ARG A 606 PRO A 607 146.39 REMARK 500 SER C 128 PRO C 129 -134.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 54 SG REMARK 620 2 FES B 301 S1 129.1 REMARK 620 3 FES B 301 S2 117.6 90.2 REMARK 620 4 CYS B 59 SG 93.8 104.8 124.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 62 SG REMARK 620 2 FES B 301 S1 120.2 REMARK 620 3 FES B 301 S2 122.4 89.9 REMARK 620 4 CYS B 74 SG 105.5 98.7 117.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 302 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 145 SG REMARK 620 2 SF4 B 302 S1 123.2 REMARK 620 3 SF4 B 302 S3 131.6 90.7 REMARK 620 4 SF4 B 302 S4 119.7 90.5 89.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 302 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 148 SG REMARK 620 2 SF4 B 302 S1 148.5 REMARK 620 3 SF4 B 302 S2 106.1 90.3 REMARK 620 4 SF4 B 302 S4 116.0 90.2 89.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 302 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 151 SG REMARK 620 2 SF4 B 302 S2 140.8 REMARK 620 3 SF4 B 302 S3 124.7 89.4 REMARK 620 4 SF4 B 302 S4 107.1 89.9 89.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 303 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 155 SG REMARK 620 2 F3S B 303 S1 108.4 REMARK 620 3 F3S B 303 S3 122.8 92.3 REMARK 620 4 F3S B 303 S4 124.2 115.7 88.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 303 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 203 SG REMARK 620 2 F3S B 303 S1 106.2 REMARK 620 3 F3S B 303 S2 117.3 130.7 REMARK 620 4 F3S B 303 S3 116.6 91.8 88.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 303 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 207 O REMARK 620 2 F3S B 303 S2 76.7 REMARK 620 3 F3S B 303 S3 150.1 87.9 REMARK 620 4 F3S B 303 S4 80.6 125.9 88.3 REMARK 620 5 CYS B 209 SG 70.3 94.8 137.4 122.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 302 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 213 SG REMARK 620 2 SF4 B 302 S1 106.9 REMARK 620 3 SF4 B 302 S2 125.4 90.1 REMARK 620 4 SF4 B 302 S3 139.5 90.9 89.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES C 302 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 114 SG REMARK 620 2 FES C 302 S1 101.4 REMARK 620 3 FES C 302 S2 114.2 91.3 REMARK 620 4 HIS C 240 NE2 119.6 104.9 118.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES C 302 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 155 NE2 REMARK 620 2 FES C 302 S1 111.8 REMARK 620 3 FES C 302 S2 105.1 91.3 REMARK 620 4 CYS C 206 SG 107.3 127.5 111.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-30595 RELATED DB: EMDB REMARK 900 MYCOBACTERIUM SMEGMATIS SDH1 COMPLEX IN APP FORM DBREF1 7D6X A 1 635 UNP A0A0D6G5S3_MYCSM DBREF2 7D6X A A0A0D6G5S3 1 635 DBREF1 7D6X B 1 249 UNP A0A0D6G6K3_MYCSM DBREF2 7D6X B A0A0D6G6K3 1 249 DBREF1 7D6X C 1 273 UNP A0A0D6G6P6_MYCSM DBREF2 7D6X C A0A0D6G6P6 1 273 SEQADV 7D6X HIS C 274 UNP A0A0D6G6P EXPRESSION TAG SEQADV 7D6X HIS C 275 UNP A0A0D6G6P EXPRESSION TAG SEQADV 7D6X HIS C 276 UNP A0A0D6G6P EXPRESSION TAG SEQADV 7D6X HIS C 277 UNP A0A0D6G6P EXPRESSION TAG SEQADV 7D6X HIS C 278 UNP A0A0D6G6P EXPRESSION TAG SEQADV 7D6X HIS C 279 UNP A0A0D6G6P EXPRESSION TAG SEQADV 7D6X HIS C 280 UNP A0A0D6G6P EXPRESSION TAG SEQADV 7D6X HIS C 281 UNP A0A0D6G6P EXPRESSION TAG SEQADV 7D6X HIS C 282 UNP A0A0D6G6P EXPRESSION TAG SEQADV 7D6X HIS C 283 UNP A0A0D6G6P EXPRESSION TAG SEQRES 1 A 635 MET SER GLU LEU GLU ARG HIS SER TYR ASP VAL VAL VAL SEQRES 2 A 635 ILE GLY ALA GLY GLY ALA GLY LEU ARG ALA VAL ILE GLU SEQRES 3 A 635 ALA ARG GLU ARG GLY LEU ARG VAL ALA VAL VAL THR LYS SEQRES 4 A 635 SER LEU PHE GLY LYS ALA HIS THR VAL MET ALA GLU GLY SEQRES 5 A 635 GLY CYS ALA ALA ALA MET ARG ASN VAL ASN THR LYS ASP SEQRES 6 A 635 SER TRP GLN VAL HIS PHE GLY ASP THR MET ARG GLY GLY SEQRES 7 A 635 LYS PHE LEU ASN ASN TRP ARG MET ALA GLU LEU HIS ALA SEQRES 8 A 635 GLN GLU ALA PRO ASP ARG VAL TRP GLU LEU GLU THR TYR SEQRES 9 A 635 GLY ALA LEU PHE ASP ARG THR LYS ASP GLY LYS ILE SER SEQRES 10 A 635 GLN ARG ASN PHE GLY GLY HIS THR TYR PRO ARG LEU ALA SEQRES 11 A 635 HIS VAL GLY ASP ARG THR GLY LEU GLU ILE ILE ARG THR SEQRES 12 A 635 LEU GLN GLN LYS ILE VAL SER LEU GLN GLN GLU ASP LYS SEQRES 13 A 635 ARG GLU LEU GLY ASP TYR GLU ALA ARG ILE ARG VAL PHE SEQRES 14 A 635 HIS GLU THR SER ILE THR GLU LEU ILE LEU ASP ASP GLY SEQRES 15 A 635 LYS ILE ALA GLY ALA PHE GLY TYR TYR ARG GLU THR GLY SEQRES 16 A 635 ASN PHE VAL LEU PHE GLU ALA PRO ALA VAL VAL LEU ALA SEQRES 17 A 635 THR GLY GLY ILE GLY LYS SER PHE LYS VAL SER SER ASN SEQRES 18 A 635 SER TRP GLU TYR THR GLY ASP GLY HIS ALA LEU ALA LEU SEQRES 19 A 635 ARG ALA GLY SER ALA LEU ILE ASN MET GLU PHE ILE GLN SEQRES 20 A 635 PHE HIS PRO THR GLY MET VAL TRP PRO LEU SER VAL LYS SEQRES 21 A 635 GLY ILE LEU VAL THR GLU GLY VAL ARG GLY ASP GLY GLY SEQRES 22 A 635 VAL LEU LYS ASN SER GLU GLY LYS ARG PHE MET PHE ASP SEQRES 23 A 635 TYR ILE PRO SER VAL PHE LYS GLY GLN TYR ALA GLU THR SEQRES 24 A 635 GLU GLU GLU ALA ASP GLN TRP LEU LYS ASP ASN ASP SER SEQRES 25 A 635 ALA ARG ARG THR PRO ASP LEU LEU PRO ARG ASP GLU VAL SEQRES 26 A 635 ALA ARG ALA ILE ASN ALA GLU VAL LYS ALA GLY ARG GLY SEQRES 27 A 635 SER PRO HIS GLY GLY VAL TYR LEU ASP ILE ALA SER ARG SEQRES 28 A 635 MET PRO ALA GLU GLU ILE LYS ARG ARG LEU PRO SER MET SEQRES 29 A 635 TYR HIS GLN PHE ILE GLU LEU ALA GLU VAL ASP ILE THR SEQRES 30 A 635 LYS ASP ALA MET GLU VAL GLY PRO THR CYS HIS TYR VAL SEQRES 31 A 635 MET GLY GLY ILE GLU VAL ASP PRO ASP THR ALA ALA GLY SEQRES 32 A 635 ALA THR PRO GLY LEU PHE ALA ALA GLY GLU CYS SER GLY SEQRES 33 A 635 GLY MET HIS GLY SER ASN ARG LEU GLY GLY ASN SER LEU SEQRES 34 A 635 SER ASP LEU LEU VAL PHE GLY ARG ARG ALA GLY LEU GLY SEQRES 35 A 635 ALA ALA ASP TYR VAL ARG ALA LEU PRO ASP ARG PRO LYS SEQRES 36 A 635 VAL SER GLU ALA ALA VAL GLU ASP ALA THR ARG LEU VAL SEQRES 37 A 635 LEU ALA PRO PHE GLU PRO LYS ALA GLU PRO GLU ASN PRO SEQRES 38 A 635 TYR THR LEU HIS ALA GLU LEU GLN GLN SER MET ASN ASP SEQRES 39 A 635 LEU VAL GLY ILE ILE ARG LYS GLU ALA GLU ILE GLN GLU SEQRES 40 A 635 ALA LEU ASP ARG LEU GLN GLU LEU LYS ARG ARG TYR ALA SEQRES 41 A 635 ASN VAL THR VAL GLU GLY GLY ARG VAL PHE ASN PRO GLY SEQRES 42 A 635 TRP HIS LEU ALA ILE ASP MET ARG ASN MET LEU LEU VAL SEQRES 43 A 635 SER GLU CYS VAL ALA LYS ALA ALA LEU GLN ARG THR GLU SEQRES 44 A 635 SER ARG GLY GLY HIS THR ARG ASP ASP TYR PRO GLU MET SEQRES 45 A 635 ASP ALA ASN TRP ARG ASN THR LEU LEU VAL CYS ARG VAL SEQRES 46 A 635 SER GLY GLY ASP PRO VAL VAL PRO ASP VAL THR VAL THR SEQRES 47 A 635 PRO GLU GLN GLN VAL PRO MET ARG PRO ASP LEU LEU GLY SEQRES 48 A 635 CYS PHE GLU LEU SER GLU LEU GLU LYS TYR TYR THR PRO SEQRES 49 A 635 GLU GLU LEU ALA GLU HIS PRO GLU ARG LYS GLY SEQRES 1 B 249 MET ALA THR TYR ASP ALA LYS LEU ARG VAL TRP ARG GLY SEQRES 2 B 249 ASP ASP THR GLY GLY GLU LEU HIS ASP TYR THR VAL GLU SEQRES 3 B 249 VAL ASN ASP GLY GLU VAL VAL LEU ASP ILE ILE HIS ARG SEQRES 4 B 249 LEU GLN ALA THR GLN THR PRO ASP LEU ALA VAL ARG TRP SEQRES 5 B 249 ASN CYS LYS ALA GLY LYS CYS GLY SER CYS SER ALA GLU SEQRES 6 B 249 ILE ASN GLY ARG PRO ARG LEU MET CYS MET THR ARG MET SEQRES 7 B 249 SER THR PHE GLY GLU ASP GLU VAL VAL THR VAL THR PRO SEQRES 8 B 249 LEU ARG THR PHE PRO VAL MET ARG ASP LEU VAL THR ASP SEQRES 9 B 249 VAL SER PHE ASN TYR GLU LYS ALA ARG GLN ILE PRO SER SEQRES 10 B 249 PHE THR PRO PRO LYS ASP LEU GLN PRO GLY GLU TYR ARG SEQRES 11 B 249 MET GLN GLN GLU ASP VAL ASN ARG SER GLN GLU PHE ARG SEQRES 12 B 249 LYS CYS ILE GLU CYS PHE LEU CYS GLN ASN VAL CYS HIS SEQRES 13 B 249 VAL VAL ARG ASP HIS GLU GLU ASN LYS GLU ASN PHE ALA SEQRES 14 B 249 GLY PRO ARG PHE HIS MET ARG ILE ALA GLU LEU ASP MET SEQRES 15 B 249 HIS PRO LEU ASP THR VAL ASP ARG LYS GLU MET ALA GLN SEQRES 16 B 249 ASP GLU PHE GLY LEU GLY TYR CYS ASN ILE THR LYS CYS SEQRES 17 B 249 CYS THR GLU VAL CYS PRO GLU HIS ILE LYS ILE THR ASP SEQRES 18 B 249 ASN ALA LEU ILE PRO MET LYS GLU ARG VAL ALA ASP ARG SEQRES 19 B 249 LYS TYR ASP PRO ILE VAL TRP LEU GLY ASN LYS LEU PHE SEQRES 20 B 249 ARG ARG SEQRES 1 C 283 MET SER ALA PRO THR ALA ASP ARG ARG ALA THR GLY VAL SEQRES 2 C 283 PHE SER PRO ARG ARG ALA GLN ILE PRO GLU ARG THR LEU SEQRES 3 C 283 ARG THR ASP ARG TRP TRP GLN ALA PRO LEU LEU THR ASN SEQRES 4 C 283 LEU GLY LEU ALA ALA PHE VAL ILE TYR ALA THR ILE ARG SEQRES 5 C 283 ALA PHE TRP GLY SER ALA TYR TRP VAL ALA ASP TYR HIS SEQRES 6 C 283 TYR LEU THR PRO PHE TYR SER PRO CYS VAL SER THR ALA SEQRES 7 C 283 CYS ALA PRO GLY SER SER HIS PHE GLY GLN TRP VAL GLY SEQRES 8 C 283 ASP LEU PRO TRP PHE ILE PRO MET ALA PHE ILE SER LEU SEQRES 9 C 283 PRO PHE LEU LEU ALA PHE ARG LEU THR CYS TYR TYR TYR SEQRES 10 C 283 ARG LYS ALA TYR TYR ARG SER VAL TRP GLN SER PRO THR SEQRES 11 C 283 ALA CYS ALA VAL ALA GLU PRO HIS ALA LYS TYR THR GLY SEQRES 12 C 283 GLU THR ARG PHE PRO LEU ILE LEU GLN ASN ILE HIS ARG SEQRES 13 C 283 TYR PHE PHE TYR ALA ALA VAL LEU ILE SER LEU VAL ASN SEQRES 14 C 283 THR TYR ASP ALA ILE THR ALA PHE HIS SER PRO SER GLY SEQRES 15 C 283 PHE GLY PHE GLY LEU GLY ASN VAL ILE LEU THR GLY ASN SEQRES 16 C 283 VAL ILE LEU LEU TRP VAL TYR THR LEU SER CYS HIS SER SEQRES 17 C 283 CYS ARG HIS VAL THR GLY GLY ARG LEU LYS HIS PHE SER SEQRES 18 C 283 LYS HIS PRO VAL ARG TYR TRP ILE TRP THR GLN VAL SER SEQRES 19 C 283 LYS LEU ASN THR ARG HIS MET LEU PHE ALA TRP ILE THR SEQRES 20 C 283 LEU GLY THR LEU VAL LEU THR ASP PHE TYR ILE MET LEU SEQRES 21 C 283 VAL ALA SER GLY THR ILE SER ASP LEU ARG PHE ILE GLY SEQRES 22 C 283 HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS HET FAD A 701 53 HET FES B 301 4 HET SF4 B 302 8 HET F3S B 303 7 HET PEV C 301 49 HET FES C 302 4 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM PEV (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1- HETNAM 2 PEV [(PALMITOYLOXY)METHYL]ETHYL STEARATE HETSYN PEV PHOSPHATIDYLETHANOLAMINE; 1-PALMITOYL-2-OLEOYL-SN- HETSYN 2 PEV GLYCERO-3-PHOSPHOETHANOLAMINE FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 5 FES 2(FE2 S2) FORMUL 6 SF4 FE4 S4 FORMUL 7 F3S FE3 S4 FORMUL 8 PEV C39 H78 N O8 P HELIX 1 AA1 GLY A 18 GLY A 31 1 14 HELIX 2 AA2 ALA A 45 ALA A 50 5 6 HELIX 3 AA3 SER A 66 GLY A 78 1 13 HELIX 4 AA4 ASN A 83 GLU A 102 1 20 HELIX 5 AA5 ARG A 135 LEU A 159 1 25 HELIX 6 AA6 ILE A 212 PHE A 216 5 5 HELIX 7 AA7 GLY A 229 GLY A 237 1 9 HELIX 8 AA8 GLY A 267 ASP A 271 5 5 HELIX 9 AA9 PRO A 321 ALA A 335 1 15 HELIX 10 AB1 ALA A 354 LEU A 361 1 8 HELIX 11 AB2 LEU A 361 ALA A 372 1 12 HELIX 12 AB3 ALA A 411 GLU A 413 5 3 HELIX 13 AB4 GLY A 426 ALA A 449 1 24 HELIX 14 AB5 SER A 457 ALA A 470 1 14 HELIX 15 AB6 PRO A 471 GLU A 473 5 3 HELIX 16 AB7 ASN A 480 VAL A 496 1 17 HELIX 17 AB8 LYS A 501 GLN A 506 1 6 HELIX 18 AB9 GLN A 506 TYR A 519 1 14 HELIX 19 AC1 ALA A 520 VAL A 522 5 3 HELIX 20 AC2 ASN A 531 ARG A 557 1 27 HELIX 21 AC3 GLU A 614 GLU A 619 1 6 HELIX 22 AC4 VAL B 32 GLN B 44 1 13 HELIX 23 AC5 SER B 106 LYS B 111 1 6 HELIX 24 AC6 ALA B 112 ILE B 115 5 4 HELIX 25 AC7 GLN B 125 TYR B 129 5 5 HELIX 26 AC8 GLN B 132 ARG B 143 1 12 HELIX 27 AC9 PHE B 149 CYS B 155 1 7 HELIX 28 AD1 CYS B 155 ASP B 160 1 6 HELIX 29 AD2 HIS B 161 LYS B 165 5 5 HELIX 30 AD3 GLY B 170 MET B 182 1 13 HELIX 31 AD4 ARG B 190 GLU B 197 1 8 HELIX 32 AD5 GLY B 199 CYS B 203 5 5 HELIX 33 AD6 LYS B 218 ALA B 223 1 6 HELIX 34 AD7 ALA B 223 TYR B 236 1 14 HELIX 35 AD8 TRP C 32 GLY C 56 1 25 HELIX 36 AD9 PRO C 69 SER C 72 5 4 HELIX 37 AE1 SER C 103 THR C 113 1 11 HELIX 38 AE2 CYS C 114 VAL C 125 1 12 HELIX 39 AE3 THR C 142 THR C 145 5 4 HELIX 40 AE4 ARG C 146 LEU C 151 1 6 HELIX 41 AE5 ILE C 154 ALA C 176 1 23 HELIX 42 AE6 LEU C 187 SER C 205 1 19 HELIX 43 AE7 CYS C 206 GLY C 214 1 9 HELIX 44 AE8 HIS C 223 THR C 238 1 16 HELIX 45 AE9 ARG C 239 GLY C 264 1 26 SHEET 1 AA1 4 GLU A 5 SER A 8 0 SHEET 2 AA1 4 PHE A 197 GLU A 201 1 O GLU A 201 N HIS A 7 SHEET 3 AA1 4 ALA A 187 TYR A 191 -1 N GLY A 189 O VAL A 198 SHEET 4 AA1 4 THR A 172 GLU A 176 -1 N SER A 173 O TYR A 190 SHEET 1 AA2 5 ILE A 166 PHE A 169 0 SHEET 2 AA2 5 VAL A 34 VAL A 37 1 N VAL A 36 O PHE A 169 SHEET 3 AA2 5 VAL A 11 ILE A 14 1 N VAL A 13 O ALA A 35 SHEET 4 AA2 5 ALA A 204 VAL A 206 1 O VAL A 206 N VAL A 12 SHEET 5 AA2 5 LEU A 408 PHE A 409 1 O PHE A 409 N VAL A 205 SHEET 1 AA3 3 CYS A 54 ALA A 55 0 SHEET 2 AA3 3 LEU A 129 ALA A 130 -1 O ALA A 130 N CYS A 54 SHEET 3 AA3 3 GLN A 118 ARG A 119 -1 N ARG A 119 O LEU A 129 SHEET 1 AA4 3 LEU A 240 ILE A 241 0 SHEET 2 AA4 3 GLY A 393 GLU A 395 -1 O GLY A 393 N ILE A 241 SHEET 3 AA4 3 SER A 415 GLY A 416 1 O GLY A 416 N ILE A 394 SHEET 1 AA5 2 ILE A 246 HIS A 249 0 SHEET 2 AA5 2 THR A 386 VAL A 390 -1 O TYR A 389 N GLN A 247 SHEET 1 AA6 2 VAL A 582 VAL A 585 0 SHEET 2 AA6 2 ASP A 594 VAL A 597 -1 O VAL A 595 N ARG A 584 SHEET 1 AA7 3 GLY B 17 VAL B 27 0 SHEET 2 AA7 3 TYR B 4 ASP B 14 -1 N ALA B 6 O VAL B 25 SHEET 3 AA7 3 VAL B 86 VAL B 89 1 O VAL B 87 N LYS B 7 SHEET 1 AA8 2 SER B 63 GLU B 65 0 SHEET 2 AA8 2 PRO B 70 LEU B 72 -1 O ARG B 71 N ALA B 64 SHEET 1 AA9 2 TRP C 60 VAL C 61 0 SHEET 2 AA9 2 TYR C 66 LEU C 67 -1 O TYR C 66 N VAL C 61 SHEET 1 AB1 2 HIS C 178 SER C 179 0 SHEET 2 AB1 2 GLY C 182 PHE C 183 -1 O GLY C 182 N SER C 179 LINK SG CYS B 54 FE1 FES B 301 1555 1555 2.62 LINK SG CYS B 59 FE1 FES B 301 1555 1555 2.37 LINK SG CYS B 62 FE2 FES B 301 1555 1555 2.44 LINK SG CYS B 74 FE2 FES B 301 1555 1555 2.53 LINK SG CYS B 145 FE2 SF4 B 302 1555 1555 2.36 LINK SG CYS B 148 FE3 SF4 B 302 1555 1555 2.42 LINK SG CYS B 151 FE1 SF4 B 302 1555 1555 2.41 LINK SG CYS B 155 FE3 F3S B 303 1555 1555 2.46 LINK SG CYS B 203 FE1 F3S B 303 1555 1555 2.09 LINK O LYS B 207 FE4 F3S B 303 1555 1555 2.76 LINK SG CYS B 209 FE4 F3S B 303 1555 1555 2.48 LINK SG CYS B 213 FE4 SF4 B 302 1555 1555 2.37 LINK SG CYS C 114 FE2 FES C 302 1555 1555 2.44 LINK NE2 HIS C 155 FE1 FES C 302 1555 1555 1.82 LINK SG CYS C 206 FE1 FES C 302 1555 1555 2.46 LINK NE2 HIS C 240 FE2 FES C 302 1555 1555 1.85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000