HEADER MEMBRANE PROTEIN 05-OCT-20 7D7Q TITLE CRYSTAL STRUCTURE OF THE TRANSMEMBRANE DOMAIN AND LINKER REGION OF TITLE 2 SALPINGOECA ROSETTA RHODOPSIN PHOSPHODIESTERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.4.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALPINGOECA ROSETTA (STRAIN ATCC 50818 / BSB- SOURCE 3 021); SOURCE 4 ORGANISM_TAXID: 946362; SOURCE 5 GENE: PTSG_02023; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS MICROBIAL RHODOPSIN, EIGHT-TRANSMEMBRANE, LIGHT-DEPENDENT KEYWDS 2 PHOSPHODIESTERASE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.IKUTA,W.SHIHOYA,K.YAMASHITA,O.NUREKI REVDAT 3 29-NOV-23 7D7Q 1 REMARK REVDAT 2 25-NOV-20 7D7Q 1 JRNL REVDAT 1 18-NOV-20 7D7Q 0 JRNL AUTH T.IKUTA,W.SHIHOYA,M.SUGIURA,K.YOSHIDA,M.WATARI,T.TOKANO, JRNL AUTH 2 K.YAMASHITA,K.KATAYAMA,S.P.TSUNODA,T.UCHIHASHI,H.KANDORI, JRNL AUTH 3 O.NUREKI JRNL TITL STRUCTURAL INSIGHTS INTO THE MECHANISM OF RHODOPSIN JRNL TITL 2 PHOSPHODIESTERASE. JRNL REF NAT COMMUN V. 11 5605 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33154353 JRNL DOI 10.1038/S41467-020-19376-7 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 13675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.269 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4000 - 5.9800 0.97 2689 138 0.2439 0.3002 REMARK 3 2 5.9800 - 4.7500 0.98 2607 135 0.2719 0.3183 REMARK 3 3 4.7500 - 4.1500 0.98 2604 138 0.2522 0.3021 REMARK 3 4 4.1500 - 3.7700 0.98 2584 132 0.2715 0.3417 REMARK 3 5 3.7700 - 3.5000 0.97 2504 144 0.3108 0.3160 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.481 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.361 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4728 REMARK 3 ANGLE : 0.635 6422 REMARK 3 CHIRALITY : 0.036 727 REMARK 3 PLANARITY : 0.003 796 REMARK 3 DIHEDRAL : 13.467 2758 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13712 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.550 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7CJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 500DME, 100MM NA REMARK 280 -CITRATE, PH 5.0, 100MM NAK-TARTRATE, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.26500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 103.27000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.15000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.26500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 103.27000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.15000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.26500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.27000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.15000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.26500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.27000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 32 REMARK 465 GLY A 33 REMARK 465 ARG A 34 REMARK 465 GLY A 35 REMARK 465 LYS A 36 REMARK 465 ARG A 37 REMARK 465 ARG A 38 REMARK 465 ALA A 39 REMARK 465 LYS A 40 REMARK 465 THR A 41 REMARK 465 ARG A 42 REMARK 465 SER A 321 REMARK 465 ALA A 322 REMARK 465 LEU A 323 REMARK 465 THR A 324 REMARK 465 GLY A 325 REMARK 465 MET A 326 REMARK 465 LEU A 327 REMARK 465 LYS A 328 REMARK 465 VAL A 329 REMARK 465 MET A 330 REMARK 465 ARG A 331 REMARK 465 LYS A 332 REMARK 465 THR A 333 REMARK 465 ASN A 334 REMARK 465 LEU A 335 REMARK 465 SER A 336 REMARK 465 SER A 337 REMARK 465 SER A 338 REMARK 465 ARG A 339 REMARK 465 MET A 340 REMARK 465 ALA A 341 REMARK 465 GLN A 342 REMARK 465 LEU A 343 REMARK 465 ASP A 344 REMARK 465 GLY A 345 REMARK 465 VAL A 346 REMARK 465 ASP A 347 REMARK 465 ASP A 348 REMARK 465 ASP A 349 REMARK 465 VAL A 350 REMARK 465 LYS A 351 REMARK 465 SER A 352 REMARK 465 TRP A 353 REMARK 465 ILE A 354 REMARK 465 MET A 355 REMARK 465 ASN A 356 REMARK 465 GLU A 357 REMARK 465 PHE A 358 REMARK 465 SER A 359 REMARK 465 GLY A 360 REMARK 465 SER A 361 REMARK 465 THR A 362 REMARK 465 ASP A 363 REMARK 465 GLY A 364 REMARK 465 LYS A 365 REMARK 465 GLY A 366 REMARK 465 GLY A 367 REMARK 465 ASP A 368 REMARK 465 ASP A 369 REMARK 465 ALA A 370 REMARK 465 LYS A 371 REMARK 465 ALA A 372 REMARK 465 GLN A 373 REMARK 465 GLN A 374 REMARK 465 ARG A 375 REMARK 465 ALA A 376 REMARK 465 ARG A 377 REMARK 465 GLY A 378 REMARK 465 GLU A 379 REMARK 465 ASN A 380 REMARK 465 LEU A 381 REMARK 465 TYR A 382 REMARK 465 PHE A 383 REMARK 465 GLN A 384 REMARK 465 MET B 32 REMARK 465 GLY B 33 REMARK 465 ARG B 34 REMARK 465 GLY B 35 REMARK 465 LYS B 36 REMARK 465 ARG B 37 REMARK 465 ARG B 38 REMARK 465 ALA B 39 REMARK 465 LYS B 40 REMARK 465 THR B 41 REMARK 465 ARG B 42 REMARK 465 ASN B 43 REMARK 465 ILE B 354 REMARK 465 MET B 355 REMARK 465 ASN B 356 REMARK 465 GLU B 357 REMARK 465 PHE B 358 REMARK 465 SER B 359 REMARK 465 GLY B 360 REMARK 465 SER B 361 REMARK 465 THR B 362 REMARK 465 ASP B 363 REMARK 465 GLY B 364 REMARK 465 LYS B 365 REMARK 465 GLY B 366 REMARK 465 GLY B 367 REMARK 465 ASP B 368 REMARK 465 ASP B 369 REMARK 465 ALA B 370 REMARK 465 LYS B 371 REMARK 465 ALA B 372 REMARK 465 GLN B 373 REMARK 465 GLN B 374 REMARK 465 ARG B 375 REMARK 465 ALA B 376 REMARK 465 ARG B 377 REMARK 465 GLY B 378 REMARK 465 GLU B 379 REMARK 465 ASN B 380 REMARK 465 LEU B 381 REMARK 465 TYR B 382 REMARK 465 PHE B 383 REMARK 465 GLN B 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 184 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 243 CG CD OE1 NE2 REMARK 470 ARG A 250 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 251 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 309 CG CD OE1 OE2 REMARK 470 ILE B 44 CG1 CG2 CD1 REMARK 470 TRP B 54 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 54 CZ3 CH2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 81 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 183 CG OD1 OD2 REMARK 470 GLN B 243 CG CD OE1 NE2 REMARK 470 ARG B 250 CG CD NE CZ NH1 NH2 REMARK 470 MET B 319 CG SD CE REMARK 470 MET B 326 CG SD CE REMARK 470 ARG B 331 CG CD NE CZ NH1 NH2 REMARK 470 MET B 340 CG SD CE REMARK 470 TRP B 353 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 353 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 44 -138.21 50.05 REMARK 500 ALA A 45 113.64 -168.80 REMARK 500 ARG A 181 62.28 61.08 REMARK 500 PRO A 208 -167.98 -66.28 REMARK 500 SER A 209 -71.28 -60.57 REMARK 500 PHE B 83 43.06 -79.06 REMARK 500 ALA B 84 -46.29 -153.99 REMARK 500 LEU B 159 -39.46 60.01 REMARK 500 SER B 336 117.55 -162.39 REMARK 500 SER B 337 -1.96 53.45 REMARK 500 SER B 338 72.82 -67.86 REMARK 500 ARG B 339 99.54 -62.40 REMARK 500 ALA B 341 -64.97 -140.73 REMARK 500 GLN B 342 -144.02 -123.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7CJ3 RELATED DB: PDB REMARK 900 RH-PDE TRANSMEMBRANE DOMAIN REMARK 900 RELATED ID: 7D7P RELATED DB: PDB REMARK 900 RH-PDE PHOSPHODIESTERASE DOMAIN DBREF 7D7Q A 33 378 UNP F2TZN0 F2TZN0_SALR5 33 378 DBREF 7D7Q B 33 378 UNP F2TZN0 F2TZN0_SALR5 33 378 SEQADV 7D7Q MET A 32 UNP F2TZN0 INITIATING METHIONINE SEQADV 7D7Q GLU A 379 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7Q ASN A 380 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7Q LEU A 381 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7Q TYR A 382 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7Q PHE A 383 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7Q GLN A 384 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7Q MET B 32 UNP F2TZN0 INITIATING METHIONINE SEQADV 7D7Q GLU B 379 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7Q ASN B 380 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7Q LEU B 381 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7Q TYR B 382 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7Q PHE B 383 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7Q GLN B 384 UNP F2TZN0 EXPRESSION TAG SEQRES 1 A 353 MET GLY ARG GLY LYS ARG ARG ALA LYS THR ARG ASN ILE SEQRES 2 A 353 ALA ILE ALA SER THR LYS GLU VAL GLN TRP GLN GLY ILE SEQRES 3 A 353 PHE MET ILE ILE VAL TRP LEU CYS VAL MET GLY SER LEU SEQRES 4 A 353 ILE PHE PHE ALA ASN PRO GLU ALA SER ARG ARG VAL PHE SEQRES 5 A 353 ALA LYS PHE SER HIS LEU GLN SER PHE TYR GLY ALA THR SEQRES 6 A 353 SER VAL ALA PHE ALA PHE ALA THR GLY LEU ASP ILE LEU SEQRES 7 A 353 ALA TYR VAL ASN ALA VAL SER ASP GLU LYS ARG VAL LEU SEQRES 8 A 353 SER GLY ILE LEU ALA TYR VAL ASP GLY VAL ALA CYS ILE SEQRES 9 A 353 SER TYR LEU SER MET ALA THR LEU ASN LEU TYR PHE LEU SEQRES 10 A 353 VAL ASP SER THR GLN GLY ASN PRO VAL TRP LEU MET ARG SEQRES 11 A 353 TYR ALA GLU TRP ILE ILE THR CYS PRO THR LEU LEU TYR SEQRES 12 A 353 TRP CYS GLY LEU ALA SER ARG ALA ASP ARG SER SER VAL SEQRES 13 A 353 SER ASP ILE ALA THR ALA ASP ALA LEU LEU LEU ALA GLY SEQRES 14 A 353 GLY ALA LEU SER SER ILE LEU PRO SER TRP PRO ALA PHE SEQRES 15 A 353 PHE VAL PHE ALA GLY SER PHE ALA THR TYR ILE TYR VAL SEQRES 16 A 353 MET LEU HIS MET TRP GLY MET PHE GLY LYS ALA MET GLN SEQRES 17 A 353 PRO ASP PHE GLN PRO PRO PRO PRO LEU PRO ARG HIS ALA SEQRES 18 A 353 LEU HIS LEU LEU ARG CYS GLU ILE VAL MET SER TRP SER SEQRES 19 A 353 ILE PHE PRO LEU VAL GLU PHE LEU ARG ARG GLN GLY TYR SEQRES 20 A 353 ILE ASP PHE GLN VAL GLY GLU ALA MET ASN CYS VAL ALA SEQRES 21 A 353 ASP TYR ALA ALA LYS VAL GLY LEU ALA MET ILE MET VAL SEQRES 22 A 353 ASN CYS ASN LEU GLU GLN ILE ASN ALA LEU ARG VAL GLN SEQRES 23 A 353 GLN MET HIS SER ALA LEU THR GLY MET LEU LYS VAL MET SEQRES 24 A 353 ARG LYS THR ASN LEU SER SER SER ARG MET ALA GLN LEU SEQRES 25 A 353 ASP GLY VAL ASP ASP ASP VAL LYS SER TRP ILE MET ASN SEQRES 26 A 353 GLU PHE SER GLY SER THR ASP GLY LYS GLY GLY ASP ASP SEQRES 27 A 353 ALA LYS ALA GLN GLN ARG ALA ARG GLY GLU ASN LEU TYR SEQRES 28 A 353 PHE GLN SEQRES 1 B 353 MET GLY ARG GLY LYS ARG ARG ALA LYS THR ARG ASN ILE SEQRES 2 B 353 ALA ILE ALA SER THR LYS GLU VAL GLN TRP GLN GLY ILE SEQRES 3 B 353 PHE MET ILE ILE VAL TRP LEU CYS VAL MET GLY SER LEU SEQRES 4 B 353 ILE PHE PHE ALA ASN PRO GLU ALA SER ARG ARG VAL PHE SEQRES 5 B 353 ALA LYS PHE SER HIS LEU GLN SER PHE TYR GLY ALA THR SEQRES 6 B 353 SER VAL ALA PHE ALA PHE ALA THR GLY LEU ASP ILE LEU SEQRES 7 B 353 ALA TYR VAL ASN ALA VAL SER ASP GLU LYS ARG VAL LEU SEQRES 8 B 353 SER GLY ILE LEU ALA TYR VAL ASP GLY VAL ALA CYS ILE SEQRES 9 B 353 SER TYR LEU SER MET ALA THR LEU ASN LEU TYR PHE LEU SEQRES 10 B 353 VAL ASP SER THR GLN GLY ASN PRO VAL TRP LEU MET ARG SEQRES 11 B 353 TYR ALA GLU TRP ILE ILE THR CYS PRO THR LEU LEU TYR SEQRES 12 B 353 TRP CYS GLY LEU ALA SER ARG ALA ASP ARG SER SER VAL SEQRES 13 B 353 SER ASP ILE ALA THR ALA ASP ALA LEU LEU LEU ALA GLY SEQRES 14 B 353 GLY ALA LEU SER SER ILE LEU PRO SER TRP PRO ALA PHE SEQRES 15 B 353 PHE VAL PHE ALA GLY SER PHE ALA THR TYR ILE TYR VAL SEQRES 16 B 353 MET LEU HIS MET TRP GLY MET PHE GLY LYS ALA MET GLN SEQRES 17 B 353 PRO ASP PHE GLN PRO PRO PRO PRO LEU PRO ARG HIS ALA SEQRES 18 B 353 LEU HIS LEU LEU ARG CYS GLU ILE VAL MET SER TRP SER SEQRES 19 B 353 ILE PHE PRO LEU VAL GLU PHE LEU ARG ARG GLN GLY TYR SEQRES 20 B 353 ILE ASP PHE GLN VAL GLY GLU ALA MET ASN CYS VAL ALA SEQRES 21 B 353 ASP TYR ALA ALA LYS VAL GLY LEU ALA MET ILE MET VAL SEQRES 22 B 353 ASN CYS ASN LEU GLU GLN ILE ASN ALA LEU ARG VAL GLN SEQRES 23 B 353 GLN MET HIS SER ALA LEU THR GLY MET LEU LYS VAL MET SEQRES 24 B 353 ARG LYS THR ASN LEU SER SER SER ARG MET ALA GLN LEU SEQRES 25 B 353 ASP GLY VAL ASP ASP ASP VAL LYS SER TRP ILE MET ASN SEQRES 26 B 353 GLU PHE SER GLY SER THR ASP GLY LYS GLY GLY ASP ASP SEQRES 27 B 353 ALA LYS ALA GLN GLN ARG ALA ARG GLY GLU ASN LEU TYR SEQRES 28 B 353 PHE GLN HET RET A 401 20 HET OLC A 402 11 HET OLC A 403 25 HET OLC A 404 25 HET RET B 401 20 HET OLC B 402 25 HETNAM RET RETINAL HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 3 RET 2(C20 H28 O) FORMUL 4 OLC 4(C21 H40 O4) HELIX 1 AA1 SER A 48 PHE A 73 1 26 HELIX 2 AA2 ASN A 75 PHE A 86 1 12 HELIX 3 AA3 SER A 87 ASN A 113 1 27 HELIX 4 AA4 LYS A 119 LEU A 143 1 25 HELIX 5 AA5 LEU A 159 SER A 180 1 22 HELIX 6 AA6 ASP A 183 LEU A 207 1 25 HELIX 7 AA7 PRO A 208 MET A 238 1 31 HELIX 8 AA8 PRO A 249 SER A 265 1 17 HELIX 9 AA9 SER A 265 GLN A 276 1 12 HELIX 10 AB1 ASP A 280 HIS A 320 1 41 HELIX 11 AB2 SER B 48 PHE B 73 1 26 HELIX 12 AB3 ASN B 75 PHE B 86 1 12 HELIX 13 AB4 HIS B 88 ASN B 113 1 26 HELIX 14 AB5 ASP B 117 LEU B 143 1 27 HELIX 15 AB6 LEU B 159 SER B 180 1 22 HELIX 16 AB7 ASP B 183 LEU B 203 1 21 HELIX 17 AB8 PRO B 208 LYS B 236 1 29 HELIX 18 AB9 PRO B 249 SER B 265 1 17 HELIX 19 AC1 SER B 265 GLY B 277 1 13 HELIX 20 AC2 ASP B 280 ARG B 331 1 52 HELIX 21 AC3 LEU B 343 TRP B 353 1 11 SHEET 1 AA1 2 PHE A 147 VAL A 149 0 SHEET 2 AA1 2 PRO A 156 TRP A 158 -1 O VAL A 157 N LEU A 148 SHEET 1 AA2 2 LEU B 148 VAL B 149 0 SHEET 2 AA2 2 PRO B 156 VAL B 157 -1 O VAL B 157 N LEU B 148 LINK NZ LYS A 296 C15 RET A 401 1555 1555 1.25 LINK NZ LYS B 296 C15 RET B 401 1555 1555 1.24 CISPEP 1 GLN B 243 PRO B 244 0 0.73 CRYST1 76.300 136.530 206.540 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013106 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004842 0.00000