HEADER RNA BINDING PROTEIN 07-OCT-20 7D8B TITLE ENGINEERING DISULPHIDE-FREE AUTONOMOUS ANTIBODY VH DOMAINS TO MODULATE TITLE 2 INTRACELLULAR PATHWAYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: EIF4E,EIF-4F 25 KDA SUBUNIT,MRNA CAP-BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VH-S4; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF4E, EIF4EL1, EIF4F; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAP DEPENDENT TRANSLATION, COMPLEX, VH DOMAIN, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.FROSI,Y.C.LIN,S.JIANG,C.J.BROWN REVDAT 3 29-NOV-23 7D8B 1 REMARK REVDAT 2 14-SEP-22 7D8B 1 JRNL REVDAT 1 25-AUG-21 7D8B 0 JRNL AUTH Y.FROSI,Y.C.LIN,J.SHIMIN,S.R.RAMLAN,K.HEW,A.H.ENGMAN, JRNL AUTH 2 A.PILLAI,K.YEUNG,Y.X.CHENG,T.CORNVIK,P.NORDLUND,M.GOH, JRNL AUTH 3 D.LAMA,Z.P.GATES,C.S.VERMA,D.THEAN,D.P.LANE,I.ASIAL, JRNL AUTH 4 C.J.BROWN JRNL TITL ENGINEERING AN AUTONOMOUS VH DOMAIN TO MODULATE JRNL TITL 2 INTRACELLULAR PATHWAYS AND TO INTERROGATE THE EIF4F COMPLEX. JRNL REF NAT COMMUN V. 13 4854 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35982046 JRNL DOI 10.1038/S41467-022-32463-1 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.072 REMARK 3 FREE R VALUE TEST SET COUNT : 1450 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1997 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4817 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06800 REMARK 3 B22 (A**2) : -2.74300 REMARK 3 B33 (A**2) : 1.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.89600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.509 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.311 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.275 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.299 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.860 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4928 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4595 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6675 ; 1.185 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10544 ; 1.076 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 604 ; 6.660 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;33.797 ;21.311 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 822 ;13.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;13.569 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 633 ; 0.037 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5598 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1220 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 765 ; 0.162 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 54 ; 0.133 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2287 ; 0.152 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2434 ; 1.175 ; 3.678 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2433 ; 1.175 ; 3.678 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3029 ; 2.107 ; 5.507 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3030 ; 2.107 ; 5.507 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2494 ; 0.933 ; 3.765 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2494 ; 0.933 ; 3.765 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3645 ; 1.665 ; 5.591 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3646 ; 1.665 ; 5.591 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7D8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28611 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 70.197 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17700 REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.87600 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2V8W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M TRI-SODIUM CITRATE, 16% PEG REMARK 280 6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 70.19700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 PRO A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 THR A 11 REMARK 465 PRO A 12 REMARK 465 ASN A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 THR A 16 REMARK 465 THR A 17 REMARK 465 GLU A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 LYS A 21 REMARK 465 THR A 22 REMARK 465 GLU A 23 REMARK 465 SER A 24 REMARK 465 ASN A 25 REMARK 465 GLN A 26 REMARK 465 GLU A 27 REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 ASN A 30 REMARK 465 PRO A 31 REMARK 465 GLU A 32 REMARK 465 LYS A 52 REMARK 465 SER A 53 REMARK 465 LYS A 54 REMARK 465 THR A 55 REMARK 465 TRP A 56 REMARK 465 LYS A 206 REMARK 465 SER A 207 REMARK 465 GLY A 208 REMARK 465 SER A 209 REMARK 465 THR A 210 REMARK 465 THR A 211 REMARK 465 MET B 0 REMARK 465 SER B 134 REMARK 465 GLY B 135 REMARK 465 ALA B 136 REMARK 465 ALA B 137 REMARK 465 GLU B 138 REMARK 465 GLN B 139 REMARK 465 LYS B 140 REMARK 465 LEU B 141 REMARK 465 ILE B 142 REMARK 465 SER B 143 REMARK 465 GLU B 144 REMARK 465 GLU B 145 REMARK 465 ASP B 146 REMARK 465 LEU B 147 REMARK 465 ASN B 148 REMARK 465 GLY B 149 REMARK 465 ALA B 150 REMARK 465 ALA B 151 REMARK 465 ALA B 152 REMARK 465 PHE B 153 REMARK 465 GLU B 154 REMARK 465 HIS B 155 REMARK 465 HIS B 156 REMARK 465 HIS B 157 REMARK 465 HIS B 158 REMARK 465 HIS B 159 REMARK 465 HIS B 160 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 THR C 3 REMARK 465 VAL C 4 REMARK 465 GLU C 5 REMARK 465 PRO C 6 REMARK 465 GLU C 7 REMARK 465 THR C 8 REMARK 465 THR C 9 REMARK 465 PRO C 10 REMARK 465 THR C 11 REMARK 465 PRO C 12 REMARK 465 ASN C 13 REMARK 465 PRO C 14 REMARK 465 PRO C 15 REMARK 465 THR C 16 REMARK 465 THR C 17 REMARK 465 GLU C 18 REMARK 465 GLU C 19 REMARK 465 GLU C 20 REMARK 465 LYS C 21 REMARK 465 THR C 22 REMARK 465 GLU C 23 REMARK 465 SER C 24 REMARK 465 ASN C 25 REMARK 465 GLN C 26 REMARK 465 GLU C 27 REMARK 465 VAL C 28 REMARK 465 ALA C 29 REMARK 465 ASN C 30 REMARK 465 PRO C 31 REMARK 465 GLU C 32 REMARK 465 LYS C 49 REMARK 465 ASN C 50 REMARK 465 ASP C 51 REMARK 465 LYS C 52 REMARK 465 SER C 53 REMARK 465 LYS C 54 REMARK 465 THR C 55 REMARK 465 TRP C 56 REMARK 465 LYS C 206 REMARK 465 SER C 207 REMARK 465 GLY C 208 REMARK 465 SER C 209 REMARK 465 THR C 210 REMARK 465 THR C 211 REMARK 465 LYS C 212 REMARK 465 MET D 0 REMARK 465 SER D 134 REMARK 465 GLY D 135 REMARK 465 ALA D 136 REMARK 465 ALA D 137 REMARK 465 GLU D 138 REMARK 465 GLN D 139 REMARK 465 LYS D 140 REMARK 465 LEU D 141 REMARK 465 ILE D 142 REMARK 465 SER D 143 REMARK 465 GLU D 144 REMARK 465 GLU D 145 REMARK 465 ASP D 146 REMARK 465 LEU D 147 REMARK 465 ASN D 148 REMARK 465 GLY D 149 REMARK 465 ALA D 150 REMARK 465 ALA D 151 REMARK 465 ALA D 152 REMARK 465 PHE D 153 REMARK 465 GLU D 154 REMARK 465 HIS D 155 REMARK 465 HIS D 156 REMARK 465 HIS D 157 REMARK 465 HIS D 158 REMARK 465 HIS D 159 REMARK 465 HIS D 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 51 CG OD1 OD2 REMARK 470 GLN A 57 CG CD OE1 NE2 REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 67 26.10 -141.97 REMARK 500 ASP A 143 -119.39 48.34 REMARK 500 SER B 117 -127.02 54.00 REMARK 500 ASP C 67 22.62 -140.91 REMARK 500 PRO C 100 49.31 -76.78 REMARK 500 ASP C 143 -110.55 48.52 REMARK 500 SER D 117 -119.05 36.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 7D8B A 1 217 UNP P06730 IF4E_HUMAN 1 217 DBREF 7D8B B 0 160 PDB 7D8B 7D8B 0 160 DBREF 7D8B C 1 217 UNP P06730 IF4E_HUMAN 1 217 DBREF 7D8B D 0 160 PDB 7D8B 7D8B 0 160 SEQRES 1 A 217 MET ALA THR VAL GLU PRO GLU THR THR PRO THR PRO ASN SEQRES 2 A 217 PRO PRO THR THR GLU GLU GLU LYS THR GLU SER ASN GLN SEQRES 3 A 217 GLU VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO LEU SEQRES 4 A 217 GLN ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP LYS SEQRES 5 A 217 SER LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER LYS SEQRES 6 A 217 PHE ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN HIS SEQRES 7 A 217 ILE GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP TYR SEQRES 8 A 217 SER LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU ASP SEQRES 9 A 217 GLU LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR LEU SEQRES 10 A 217 ASN LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE TRP SEQRES 11 A 217 LEU GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE ASP SEQRES 12 A 217 ASP TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN VAL SEQRES 13 A 217 ARG ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR GLU SEQRES 14 A 217 CYS GLU ASN ARG GLU ALA VAL THR HIS ILE GLY ARG VAL SEQRES 15 A 217 TYR LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL ILE SEQRES 16 A 217 GLY TYR GLN SER HIS ALA ASP THR ALA THR LYS SER GLY SEQRES 17 A 217 SER THR THR LYS ASN ARG PHE VAL VAL SEQRES 1 B 161 MET SER GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 B 161 VAL GLN PRO GLY GLY SER LEU ARG LEU SER SER ALA ILE SEQRES 3 B 161 SER GLY PHE SER ILE SER SER THR SER ILE ASP TRP VAL SEQRES 4 B 161 ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG SEQRES 5 B 161 ILE SER PRO SER SER GLY SER THR SER TYR ALA ASP SER SEQRES 6 B 161 VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SER LYS SEQRES 7 B 161 ASN THR VAL TYR LEU GLN MET ASN SER LEU ARG ALA GLU SEQRES 8 B 161 ASP THR ALA VAL TYR TYR THR GLY ARG VAL ALA LYS ALA SEQRES 9 B 161 LEU ASN SER ARG SER PRO SER PHE VAL VAL ASN THR TYR SEQRES 10 B 161 SER SER ILE GLY PHE ASP TYR ARG GLY GLN GLY THR LEU SEQRES 11 B 161 VAL THR VAL SER SER GLY ALA ALA GLU GLN LYS LEU ILE SEQRES 12 B 161 SER GLU GLU ASP LEU ASN GLY ALA ALA ALA PHE GLU HIS SEQRES 13 B 161 HIS HIS HIS HIS HIS SEQRES 1 C 217 MET ALA THR VAL GLU PRO GLU THR THR PRO THR PRO ASN SEQRES 2 C 217 PRO PRO THR THR GLU GLU GLU LYS THR GLU SER ASN GLN SEQRES 3 C 217 GLU VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO LEU SEQRES 4 C 217 GLN ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP LYS SEQRES 5 C 217 SER LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER LYS SEQRES 6 C 217 PHE ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN HIS SEQRES 7 C 217 ILE GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP TYR SEQRES 8 C 217 SER LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU ASP SEQRES 9 C 217 GLU LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR LEU SEQRES 10 C 217 ASN LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE TRP SEQRES 11 C 217 LEU GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE ASP SEQRES 12 C 217 ASP TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN VAL SEQRES 13 C 217 ARG ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR GLU SEQRES 14 C 217 CYS GLU ASN ARG GLU ALA VAL THR HIS ILE GLY ARG VAL SEQRES 15 C 217 TYR LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL ILE SEQRES 16 C 217 GLY TYR GLN SER HIS ALA ASP THR ALA THR LYS SER GLY SEQRES 17 C 217 SER THR THR LYS ASN ARG PHE VAL VAL SEQRES 1 D 161 MET SER GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 D 161 VAL GLN PRO GLY GLY SER LEU ARG LEU SER SER ALA ILE SEQRES 3 D 161 SER GLY PHE SER ILE SER SER THR SER ILE ASP TRP VAL SEQRES 4 D 161 ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG SEQRES 5 D 161 ILE SER PRO SER SER GLY SER THR SER TYR ALA ASP SER SEQRES 6 D 161 VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SER LYS SEQRES 7 D 161 ASN THR VAL TYR LEU GLN MET ASN SER LEU ARG ALA GLU SEQRES 8 D 161 ASP THR ALA VAL TYR TYR THR GLY ARG VAL ALA LYS ALA SEQRES 9 D 161 LEU ASN SER ARG SER PRO SER PHE VAL VAL ASN THR TYR SEQRES 10 D 161 SER SER ILE GLY PHE ASP TYR ARG GLY GLN GLY THR LEU SEQRES 11 D 161 VAL THR VAL SER SER GLY ALA ALA GLU GLN LYS LEU ILE SEQRES 12 D 161 SER GLU GLU ASP LEU ASN GLY ALA ALA ALA PHE GLU HIS SEQRES 13 D 161 HIS HIS HIS HIS HIS FORMUL 5 HOH *102(H2 O) HELIX 1 AA1 VAL A 69 ASN A 77 1 9 HELIX 2 AA2 LEU A 81 LEU A 85 5 5 HELIX 3 AA3 GLN A 120 ASP A 125 1 6 HELIX 4 AA4 ASP A 125 GLY A 139 1 15 HELIX 5 AA5 PHE A 142 ASP A 147 5 6 HELIX 6 AA6 ASN A 172 GLY A 188 1 17 HELIX 7 AA7 HIS A 200 ALA A 204 1 5 HELIX 8 AA8 SER B 29 THR B 33 5 5 HELIX 9 AA9 ARG B 88 THR B 92 5 5 HELIX 10 AB1 LYS B 102 ASN B 105 5 4 HELIX 11 AB2 SER B 108 TYR B 116 1 9 HELIX 12 AB3 SER B 117 ILE B 119 5 3 HELIX 13 AB4 VAL C 69 ASN C 77 1 9 HELIX 14 AB5 LEU C 81 LEU C 85 5 5 HELIX 15 AB6 GLN C 120 ASP C 125 1 6 HELIX 16 AB7 ASP C 125 GLY C 139 1 15 HELIX 17 AB8 PHE C 142 ASP C 147 5 6 HELIX 18 AB9 ASN C 172 GLY C 188 1 17 HELIX 19 AC1 HIS C 200 THR C 205 1 6 HELIX 20 AC2 SER D 29 THR D 33 5 5 HELIX 21 AC3 ASP D 63 LYS D 66 5 4 HELIX 22 AC4 ARG D 88 THR D 92 5 5 HELIX 23 AC5 LYS D 102 ASN D 105 5 4 HELIX 24 AC6 SER D 108 TYR D 116 1 9 HELIX 25 AC7 SER D 117 ILE D 119 5 3 SHEET 1 AA1 8 LEU A 60 THR A 68 0 SHEET 2 AA1 8 PRO A 38 LYS A 49 -1 N LEU A 45 O ILE A 63 SHEET 3 AA1 8 CYS A 89 LYS A 95 -1 O SER A 92 N TRP A 46 SHEET 4 AA1 8 VAL A 149 VAL A 156 -1 O VAL A 154 N TYR A 91 SHEET 5 AA1 8 LYS A 162 THR A 167 -1 O LYS A 162 N ASN A 155 SHEET 6 AA1 8 GLY A 111 THR A 116 -1 N ILE A 115 O ILE A 163 SHEET 7 AA1 8 ILE A 195 SER A 199 -1 O GLN A 198 N ARG A 112 SHEET 8 AA1 8 PHE A 215 VAL A 217 -1 O PHE A 215 N TYR A 197 SHEET 1 AA2 4 GLN B 4 SER B 8 0 SHEET 2 AA2 4 LEU B 19 SER B 26 -1 O SER B 26 N GLN B 4 SHEET 3 AA2 4 THR B 79 MET B 84 -1 O MET B 84 N LEU B 19 SHEET 4 AA2 4 PHE B 69 ASP B 74 -1 N THR B 70 O GLN B 83 SHEET 1 AA3 6 LEU B 12 VAL B 13 0 SHEET 2 AA3 6 THR B 128 VAL B 132 1 O THR B 131 N VAL B 13 SHEET 3 AA3 6 ALA B 93 VAL B 100 -1 N TYR B 95 O THR B 128 SHEET 4 AA3 6 ILE B 35 GLN B 40 -1 N VAL B 38 O TYR B 96 SHEET 5 AA3 6 LEU B 46 ILE B 52 -1 O GLU B 47 N ARG B 39 SHEET 6 AA3 6 THR B 59 TYR B 61 -1 O SER B 60 N ARG B 51 SHEET 1 AA4 4 LEU B 12 VAL B 13 0 SHEET 2 AA4 4 THR B 128 VAL B 132 1 O THR B 131 N VAL B 13 SHEET 3 AA4 4 ALA B 93 VAL B 100 -1 N TYR B 95 O THR B 128 SHEET 4 AA4 4 PHE B 121 ARG B 124 -1 O TYR B 123 N ARG B 99 SHEET 1 AA5 8 ARG C 61 THR C 68 0 SHEET 2 AA5 8 PRO C 38 PHE C 48 -1 N LEU C 45 O ILE C 63 SHEET 3 AA5 8 CYS C 89 LYS C 95 -1 O SER C 92 N TRP C 46 SHEET 4 AA5 8 VAL C 149 VAL C 156 -1 O ALA C 152 N LEU C 93 SHEET 5 AA5 8 LYS C 162 THR C 167 -1 O LYS C 162 N ASN C 155 SHEET 6 AA5 8 GLY C 111 THR C 116 -1 N ILE C 115 O ILE C 163 SHEET 7 AA5 8 ILE C 195 SER C 199 -1 O GLN C 198 N ARG C 112 SHEET 8 AA5 8 PHE C 215 VAL C 217 -1 O PHE C 215 N TYR C 197 SHEET 1 AA6 4 GLN D 4 SER D 8 0 SHEET 2 AA6 4 LEU D 19 SER D 26 -1 O SER D 26 N GLN D 4 SHEET 3 AA6 4 THR D 79 MET D 84 -1 O MET D 84 N LEU D 19 SHEET 4 AA6 4 PHE D 69 ASP D 74 -1 N THR D 70 O GLN D 83 SHEET 1 AA7 6 LEU D 12 VAL D 13 0 SHEET 2 AA7 6 THR D 128 VAL D 132 1 O THR D 131 N VAL D 13 SHEET 3 AA7 6 ALA D 93 VAL D 100 -1 N TYR D 95 O THR D 128 SHEET 4 AA7 6 ILE D 35 GLN D 40 -1 N VAL D 38 O TYR D 96 SHEET 5 AA7 6 LEU D 46 ILE D 52 -1 O GLU D 47 N ARG D 39 SHEET 6 AA7 6 THR D 59 TYR D 61 -1 O SER D 60 N ARG D 51 SHEET 1 AA8 4 LEU D 12 VAL D 13 0 SHEET 2 AA8 4 THR D 128 VAL D 132 1 O THR D 131 N VAL D 13 SHEET 3 AA8 4 ALA D 93 VAL D 100 -1 N TYR D 95 O THR D 128 SHEET 4 AA8 4 PHE D 121 ARG D 124 -1 O TYR D 123 N ARG D 99 CRYST1 47.595 140.394 61.961 90.00 104.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021011 0.000000 0.005253 0.00000 SCALE2 0.000000 0.007123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016636 0.00000