HEADER TRANSPORT PROTEIN 10-OCT-20 7D8V TITLE CRYSTAL STRUCTURE OF A KINESIN-3 KIF13B MUTANT-T192Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN FAMILY MEMBER 13B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: KIF13B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINESIN, ATPASE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.Q.REN,W.FENG REVDAT 3 29-NOV-23 7D8V 1 REMARK REVDAT 2 02-MAR-22 7D8V 1 JRNL REVDAT 1 13-OCT-21 7D8V 0 JRNL AUTH D.Z.CONG,J.Q.REN,Y.R.ZHOU,S.WANG,J.J.LIANG,M.DING,W.FENG JRNL TITL MOTOR DOMAIN-MEDIATED AUTOINHIBITION DICTATES AXONAL JRNL TITL 2 TRANSPORT BY THE KINESIN UNC-104/KIF1A. JRNL REF PLOS GENET. V. 17 09940 2021 JRNL REFN ESSN 1553-7404 JRNL PMID 34843479 JRNL DOI 10.1371/JOURNAL.PGEN.1009940 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9200 - 4.4000 1.00 2810 120 0.1752 0.2100 REMARK 3 2 4.3900 - 3.4900 1.00 2674 155 0.1607 0.2158 REMARK 3 3 3.4900 - 3.0500 1.00 2656 124 0.1819 0.2672 REMARK 3 4 3.0500 - 2.7700 1.00 2655 138 0.1957 0.2822 REMARK 3 5 2.7700 - 2.5700 1.00 2609 132 0.2045 0.2563 REMARK 3 6 2.5700 - 2.4200 1.00 2602 180 0.2133 0.3077 REMARK 3 7 2.4200 - 2.3000 1.00 2616 137 0.2285 0.2717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5689 27.6659 0.4630 REMARK 3 T TENSOR REMARK 3 T11: 0.3585 T22: 0.2848 REMARK 3 T33: 0.3420 T12: -0.0391 REMARK 3 T13: 0.0301 T23: -0.0651 REMARK 3 L TENSOR REMARK 3 L11: 5.5775 L22: 2.5646 REMARK 3 L33: 3.0269 L12: -1.1293 REMARK 3 L13: -0.4748 L23: 0.5281 REMARK 3 S TENSOR REMARK 3 S11: 0.1645 S12: -0.0983 S13: 0.2737 REMARK 3 S21: 0.0225 S22: -0.0891 S23: -0.0804 REMARK 3 S31: -0.4338 S32: 0.0096 S33: -0.0910 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7661 11.2326 -19.2943 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.2584 REMARK 3 T33: 0.2822 T12: -0.0394 REMARK 3 T13: -0.0126 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.7372 L22: 1.3558 REMARK 3 L33: 4.5851 L12: -0.5794 REMARK 3 L13: -0.7246 L23: 0.3711 REMARK 3 S TENSOR REMARK 3 S11: 0.1798 S12: -0.0660 S13: 0.0135 REMARK 3 S21: -0.1231 S22: -0.0963 S23: -0.0952 REMARK 3 S31: -0.1369 S32: 0.2449 S33: -0.0969 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8259 4.5258 -13.8776 REMARK 3 T TENSOR REMARK 3 T11: 0.2789 T22: 0.3580 REMARK 3 T33: 0.3607 T12: 0.0029 REMARK 3 T13: 0.0015 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.1169 L22: 1.4445 REMARK 3 L33: 3.0038 L12: -0.0046 REMARK 3 L13: 0.6126 L23: 0.1394 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: -0.1791 S13: -0.0496 REMARK 3 S21: 0.1289 S22: 0.0365 S23: 0.0951 REMARK 3 S31: 0.0829 S32: -0.1867 S33: -0.0795 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5211 10.0221 -12.3190 REMARK 3 T TENSOR REMARK 3 T11: 0.2794 T22: 0.4530 REMARK 3 T33: 0.3252 T12: 0.0074 REMARK 3 T13: -0.0156 T23: -0.0704 REMARK 3 L TENSOR REMARK 3 L11: 2.5728 L22: 0.9513 REMARK 3 L33: 1.3270 L12: -1.2056 REMARK 3 L13: -2.1477 L23: 0.8883 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: -0.1603 S13: 0.2292 REMARK 3 S21: -0.0161 S22: 0.1257 S23: -0.3096 REMARK 3 S31: -0.0063 S32: 0.1682 S33: -0.1966 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19638 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 32.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 1.05900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6A1Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE, 30% (W/V) PEG REMARK 280 20000, PH 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.50000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.50000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -65.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 610 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 45 REMARK 465 LYS A 46 REMARK 465 GLY A 47 REMARK 465 ALA A 260 REMARK 465 THR A 261 REMARK 465 LYS A 262 REMARK 465 THR A 263 REMARK 465 GLY A 264 REMARK 465 ALA A 265 REMARK 465 ALA A 266 REMARK 465 GLY A 267 REMARK 465 ASP A 268 REMARK 465 ARG A 269 REMARK 465 LEU A 270 REMARK 465 LYS A 271 REMARK 465 GLU A 272 REMARK 465 GLY A 273 REMARK 465 ALA A 385 REMARK 465 GLU A 386 REMARK 465 ALA A 387 REMARK 465 MET A 388 REMARK 465 LYS A 389 REMARK 465 SER A 390 REMARK 465 PRO A 391 REMARK 465 GLU A 392 REMARK 465 LEU A 393 REMARK 465 LYS A 394 REMARK 465 ASP A 395 REMARK 465 ARG A 396 REMARK 465 LEU A 397 REMARK 465 GLU A 398 REMARK 465 GLU A 399 REMARK 465 SER A 400 REMARK 465 GLU A 401 REMARK 465 LYS A 402 REMARK 465 LEU A 403 REMARK 465 ILE A 404 REMARK 465 GLN A 405 REMARK 465 GLU A 406 REMARK 465 MET A 407 REMARK 465 THR A 408 REMARK 465 VAL A 409 REMARK 465 THR A 410 REMARK 465 TRP A 411 REMARK 465 GLU A 412 REMARK 465 GLU A 413 REMARK 465 LYS A 414 REMARK 465 LEU A 415 REMARK 465 ARG A 416 REMARK 465 LYS A 417 REMARK 465 THR A 418 REMARK 465 GLU A 419 REMARK 465 GLU A 420 REMARK 465 ILE A 421 REMARK 465 ALA A 422 REMARK 465 GLN A 423 REMARK 465 GLU A 424 REMARK 465 ARG A 425 REMARK 465 GLN A 426 REMARK 465 LYS A 427 REMARK 465 GLN A 428 REMARK 465 LEU A 429 REMARK 465 GLU A 430 REMARK 465 SER A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 41 CG OD1 ND2 REMARK 470 LEU A 44 CG CD1 CD2 REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 ARG A 168 NE CZ NH1 NH2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 ARG A 259 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 377 CG CD CE NZ REMARK 470 LYS A 384 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 32 -116.33 53.67 REMARK 500 ARG A 50 -24.23 86.27 REMARK 500 LYS A 72 -23.78 -141.09 REMARK 500 ASN A 139 -154.09 -161.49 REMARK 500 MET A 215 67.32 -107.12 REMARK 500 ASN A 275 44.20 -81.97 REMARK 500 PRO A 304 47.74 -79.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 110 OG REMARK 620 2 ADP A 502 O1B 86.2 REMARK 620 3 HOH A 604 O 95.0 78.7 REMARK 620 4 HOH A 654 O 85.7 87.8 166.4 REMARK 620 5 HOH A 666 O 164.5 88.4 98.2 79.5 REMARK 620 6 HOH A 703 O 95.7 174.4 106.3 87.2 88.4 REMARK 620 N 1 2 3 4 5 DBREF1 7D8V A 1 431 UNP A0A0G2K8Z9_RAT DBREF2 7D8V A A0A0G2K8Z9 1 431 SEQADV 7D8V TYR A 192 UNP A0A0G2K8Z THR 192 ENGINEERED MUTATION SEQADV 7D8V HIS A 432 UNP A0A0G2K8Z EXPRESSION TAG SEQADV 7D8V HIS A 433 UNP A0A0G2K8Z EXPRESSION TAG SEQADV 7D8V HIS A 434 UNP A0A0G2K8Z EXPRESSION TAG SEQADV 7D8V HIS A 435 UNP A0A0G2K8Z EXPRESSION TAG SEQADV 7D8V HIS A 436 UNP A0A0G2K8Z EXPRESSION TAG SEQADV 7D8V HIS A 437 UNP A0A0G2K8Z EXPRESSION TAG SEQRES 1 A 437 MET GLY ASP SER LYS VAL LYS VAL ALA VAL ARG VAL ARG SEQRES 2 A 437 PRO MET ASN ARG ARG GLU ILE ASP LEU HIS THR LYS CYS SEQRES 3 A 437 VAL VAL ASP VAL GLU ALA ASN LYS VAL ILE LEU ASN PRO SEQRES 4 A 437 ILE ASN THR ASN LEU SER LYS GLY ASP ALA ARG GLY GLN SEQRES 5 A 437 PRO LYS ILE PHE ALA TYR ASP HIS CYS PHE TRP SER MET SEQRES 6 A 437 ASP GLU SER VAL ARG GLU LYS TYR ALA GLY GLN ASP ASP SEQRES 7 A 437 VAL PHE LYS CYS LEU GLY GLU ASN ILE LEU GLN ASN ALA SEQRES 8 A 437 PHE ASP GLY TYR ASN ALA CYS ILE PHE ALA TYR GLY GLN SEQRES 9 A 437 THR GLY SER GLY LYS SER TYR THR MET MET GLY THR ALA SEQRES 10 A 437 ASP GLN PRO GLY LEU ILE PRO ARG LEU CYS SER GLY LEU SEQRES 11 A 437 PHE GLU ARG THR GLN LYS GLU GLU ASN GLU GLU GLN SER SEQRES 12 A 437 PHE LYS VAL GLU VAL SER TYR MET GLU ILE TYR ASN GLU SEQRES 13 A 437 LYS VAL ARG ASP LEU LEU ASP PRO LYS GLY SER ARG GLN SEQRES 14 A 437 THR LEU LYS VAL ARG GLU HIS SER VAL LEU GLY PRO TYR SEQRES 15 A 437 VAL ASP GLY LEU SER LYS LEU ALA VAL TYR SER TYR LYS SEQRES 16 A 437 ASP ILE GLU SER LEU MET SER GLU GLY ASN LYS SER ARG SEQRES 17 A 437 THR VAL ALA ALA THR ASN MET ASN GLU GLU SER SER ARG SEQRES 18 A 437 SER HIS ALA VAL PHE LYS ILE THR LEU THR HIS THR LEU SEQRES 19 A 437 TYR ASP VAL LYS SER GLY THR SER GLY GLU LYS VAL GLY SEQRES 20 A 437 LYS LEU SER LEU VAL ASP LEU ALA GLY SER GLU ARG ALA SEQRES 21 A 437 THR LYS THR GLY ALA ALA GLY ASP ARG LEU LYS GLU GLY SEQRES 22 A 437 SER ASN ILE ASN LYS SER LEU THR THR LEU GLY LEU VAL SEQRES 23 A 437 ILE SER ALA LEU ALA ASP GLN GLY ALA GLY LYS ASN LYS SEQRES 24 A 437 ASN LYS PHE VAL PRO TYR ARG ASP SER VAL LEU THR TRP SEQRES 25 A 437 LEU LEU LYS ASP SER LEU GLY GLY ASN SER LYS THR ALA SEQRES 26 A 437 MET VAL ALA THR VAL SER PRO ALA ALA ASP ASN TYR ASP SEQRES 27 A 437 GLU THR LEU SER THR LEU ARG TYR ALA ASP ARG ALA LYS SEQRES 28 A 437 HIS ILE ILE ASN HIS ALA VAL VAL ASN GLU ASP PRO ASN SEQRES 29 A 437 ALA ARG ILE ILE ARG ASP LEU ARG GLU GLU VAL GLU LYS SEQRES 30 A 437 LEU ARG GLU GLN LEU THR LYS ALA GLU ALA MET LYS SER SEQRES 31 A 437 PRO GLU LEU LYS ASP ARG LEU GLU GLU SER GLU LYS LEU SEQRES 32 A 437 ILE GLN GLU MET THR VAL THR TRP GLU GLU LYS LEU ARG SEQRES 33 A 437 LYS THR GLU GLU ILE ALA GLN GLU ARG GLN LYS GLN LEU SEQRES 34 A 437 GLU SER HIS HIS HIS HIS HIS HIS HET TRS A 501 8 HET ADP A 502 27 HET MG A 503 1 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN TRS TRIS BUFFER FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ FORMUL 5 HOH *113(H2 O) HELIX 1 AA1 ASN A 16 LEU A 22 1 7 HELIX 2 AA2 GLY A 75 LEU A 83 1 9 HELIX 3 AA3 LEU A 83 ASP A 93 1 11 HELIX 4 AA4 GLY A 108 MET A 114 1 7 HELIX 5 AA5 GLY A 121 GLU A 138 1 18 HELIX 6 AA6 SER A 193 ALA A 211 1 19 HELIX 7 AA7 MET A 215 SER A 220 1 6 HELIX 8 AA8 ASN A 277 ALA A 295 1 19 HELIX 9 AA9 PRO A 304 ASP A 307 5 4 HELIX 10 AB1 SER A 308 LEU A 314 1 7 HELIX 11 AB2 LYS A 315 LEU A 318 5 4 HELIX 12 AB3 ALA A 333 ASP A 335 5 3 HELIX 13 AB4 ASN A 336 LYS A 351 1 16 HELIX 14 AB5 PRO A 363 THR A 383 1 21 SHEET 1 AA1 2 SER A 4 LYS A 5 0 SHEET 2 AA1 2 ILE A 354 ASN A 355 -1 O ASN A 355 N SER A 4 SHEET 1 AA2 8 HIS A 60 TRP A 63 0 SHEET 2 AA2 8 LYS A 7 VAL A 12 1 N VAL A 10 O PHE A 62 SHEET 3 AA2 8 LYS A 323 VAL A 330 1 O MET A 326 N ALA A 9 SHEET 4 AA2 8 ALA A 97 TYR A 102 1 N PHE A 100 O VAL A 327 SHEET 5 AA2 8 THR A 241 ASP A 253 1 O VAL A 252 N ILE A 99 SHEET 6 AA2 8 HIS A 223 ASP A 236 -1 N ILE A 228 O LEU A 249 SHEET 7 AA2 8 GLN A 142 TYR A 154 -1 N SER A 149 O LYS A 227 SHEET 8 AA2 8 LYS A 157 ASP A 160 -1 O ARG A 159 N GLU A 152 SHEET 1 AA3 8 HIS A 60 TRP A 63 0 SHEET 2 AA3 8 LYS A 7 VAL A 12 1 N VAL A 10 O PHE A 62 SHEET 3 AA3 8 LYS A 323 VAL A 330 1 O MET A 326 N ALA A 9 SHEET 4 AA3 8 ALA A 97 TYR A 102 1 N PHE A 100 O VAL A 327 SHEET 5 AA3 8 THR A 241 ASP A 253 1 O VAL A 252 N ILE A 99 SHEET 6 AA3 8 HIS A 223 ASP A 236 -1 N ILE A 228 O LEU A 249 SHEET 7 AA3 8 GLN A 142 TYR A 154 -1 N SER A 149 O LYS A 227 SHEET 8 AA3 8 LEU A 189 VAL A 191 -1 O LEU A 189 N VAL A 148 SHEET 1 AA4 3 VAL A 28 GLU A 31 0 SHEET 2 AA4 3 LYS A 34 LEU A 37 -1 O ILE A 36 N ASP A 29 SHEET 3 AA4 3 LYS A 54 ALA A 57 -1 O LYS A 54 N LEU A 37 SHEET 1 AA5 2 LYS A 172 ARG A 174 0 SHEET 2 AA5 2 TYR A 182 ASP A 184 -1 O TYR A 182 N ARG A 174 LINK OG SER A 110 MG MG A 503 1555 1555 2.08 LINK O1B ADP A 502 MG MG A 503 1555 1555 2.29 LINK MG MG A 503 O HOH A 604 1555 1555 2.10 LINK MG MG A 503 O HOH A 654 1555 1555 2.07 LINK MG MG A 503 O HOH A 666 1555 1555 2.34 LINK MG MG A 503 O HOH A 703 1555 1555 2.12 CRYST1 87.510 87.510 97.500 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011427 0.006598 0.000000 0.00000 SCALE2 0.000000 0.013195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010256 0.00000