HEADER LIGASE 12-OCT-20 7D95 TITLE CRYSTAL STRUCTURE OF ACIVICIN-BOUND GATASE SUBUNIT OF TITLE 2 METHANOCALDOCOCCUS JANNASCHII GMP SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GMP SYNTHASE [GLUTAMINE-HYDROLYZING] SUBUNIT A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTAMINE AMIDOTRANSFERASE; COMPND 5 EC: 6.3.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII DSM 2661; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: DSM 2661; SOURCE 5 GENE: GUAAA, MJ1575; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUCCINIMIDE, DEAMIDATION, HYPERTHERMOSTABLE GLUTAMINE KEYWDS 2 AMIDOTRANSFERASE, ACIVICIN BOUND GATASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BELLUR,A.DONGRE,S.KUMAR,H.BALARAM REVDAT 4 29-NOV-23 7D95 1 REMARK REVDAT 3 15-NOV-23 7D95 1 LINK ATOM REVDAT 2 22-SEP-21 7D95 1 JRNL REVDAT 1 04-AUG-21 7D95 0 JRNL AUTH A.V.DONGRE,S.DAS,A.BELLUR,S.KUMAR,A.CHANDRASHEKARMATH, JRNL AUTH 2 T.KARMAKAR,P.BALARAM,S.BALASUBRAMANIAN,H.BALARAM JRNL TITL STRUCTURAL BASIS FOR THE HYPERTHERMOSTABILITY OF AN ARCHAEAL JRNL TITL 2 ENZYME INDUCED BY SUCCINIMIDE FORMATION. JRNL REF BIOPHYS.J. V. 120 3732 2021 JRNL REFN ESSN 1542-0086 JRNL PMID 34302792 JRNL DOI 10.1016/J.BPJ.2021.07.014 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 50917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2703 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3523 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2940 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.79000 REMARK 3 B12 (A**2) : 0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.034 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3001 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2810 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4052 ; 2.384 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6538 ; 1.274 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 5.891 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;33.179 ;25.267 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 514 ;13.145 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.094 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3284 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 556 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7D95 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53661 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 56.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1WL8 REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I/F_PLUS/MINUS REMARK 200 COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, PH 4.6, 35 % REMARK 280 PEG 6000, MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.91400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.45700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 LYS B 131 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 263 O HOH A 324 1.81 REMARK 500 NH2 ARG A 92 O HOH A 201 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG ARG A 117 NH1 ARG B 117 1665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 36 CD GLU A 36 OE2 -0.082 REMARK 500 ILE A 75 C 5CS A 76 N 0.147 REMARK 500 5CS A 76 C LEU A 77 N 0.173 REMARK 500 GLU B 36 CD GLU B 36 OE1 0.098 REMARK 500 GLU B 36 CD GLU B 36 OE2 0.071 REMARK 500 5CS B 76 C LEU B 77 N 0.171 REMARK 500 GLU B 108 C SNN B 109 N 0.179 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 17 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 58 42.71 -148.39 REMARK 500 5CS A 76 -104.13 59.60 REMARK 500 ALA B 58 43.39 -149.01 REMARK 500 5CS B 76 -93.40 61.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 108 -11.61 REMARK 500 5CS B 76 -11.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 7D95 A 1 188 UNP Q58970 GUAAA_METJA 1 188 DBREF 7D95 B 1 188 UNP Q58970 GUAAA_METJA 1 188 SEQRES 1 A 188 MET ILE VAL ILE LEU ASP ASN GLY GLY GLN TYR VAL HIS SEQRES 2 A 188 ARG ILE HIS ARG SER LEU LYS TYR ILE GLY VAL SER SER SEQRES 3 A 188 LYS ILE VAL PRO ASN THR THR PRO LEU GLU GLU ILE GLU SEQRES 4 A 188 SER ASN LYS GLU VAL LYS GLY ILE ILE LEU SER GLY GLY SEQRES 5 A 188 PRO ASP ILE GLU LYS ALA LYS ASN CYS ILE ASP ILE ALA SEQRES 6 A 188 LEU ASN ALA LYS LEU PRO ILE LEU GLY ILE 5CS LEU GLY SEQRES 7 A 188 HIS GLN LEU ILE ALA LEU ALA TYR GLY GLY GLU VAL GLY SEQRES 8 A 188 ARG ALA GLU ALA GLU GLU TYR ALA LEU THR LYS VAL TYR SEQRES 9 A 188 VAL ASP LYS GLU SNN ASP LEU PHE LYS ASN VAL PRO ARG SEQRES 10 A 188 GLU PHE ASN ALA TRP ALA SER HIS LYS ASP GLU VAL LYS SEQRES 11 A 188 LYS VAL PRO GLU GLY PHE GLU ILE LEU ALA HIS SER ASP SEQRES 12 A 188 ILE CYS GLN VAL GLU ALA MET LYS HIS LYS THR LYS PRO SEQRES 13 A 188 ILE TYR GLY VAL GLN PHE HIS PRO GLU VAL ALA HIS THR SEQRES 14 A 188 GLU TYR GLY ASN GLU ILE LEU LYS ASN PHE CYS LYS VAL SEQRES 15 A 188 CYS GLY TYR LYS PHE GLU SEQRES 1 B 188 MET ILE VAL ILE LEU ASP ASN GLY GLY GLN TYR VAL HIS SEQRES 2 B 188 ARG ILE HIS ARG SER LEU LYS TYR ILE GLY VAL SER SER SEQRES 3 B 188 LYS ILE VAL PRO ASN THR THR PRO LEU GLU GLU ILE GLU SEQRES 4 B 188 SER ASN LYS GLU VAL LYS GLY ILE ILE LEU SER GLY GLY SEQRES 5 B 188 PRO ASP ILE GLU LYS ALA LYS ASN CYS ILE ASP ILE ALA SEQRES 6 B 188 LEU ASN ALA LYS LEU PRO ILE LEU GLY ILE 5CS LEU GLY SEQRES 7 B 188 HIS GLN LEU ILE ALA LEU ALA TYR GLY GLY GLU VAL GLY SEQRES 8 B 188 ARG ALA GLU ALA GLU GLU TYR ALA LEU THR LYS VAL TYR SEQRES 9 B 188 VAL ASP LYS GLU SNN ASP LEU PHE LYS ASN VAL PRO ARG SEQRES 10 B 188 GLU PHE ASN ALA TRP ALA SER HIS LYS ASP GLU VAL LYS SEQRES 11 B 188 LYS VAL PRO GLU GLY PHE GLU ILE LEU ALA HIS SER ASP SEQRES 12 B 188 ILE CYS GLN VAL GLU ALA MET LYS HIS LYS THR LYS PRO SEQRES 13 B 188 ILE TYR GLY VAL GLN PHE HIS PRO GLU VAL ALA HIS THR SEQRES 14 B 188 GLU TYR GLY ASN GLU ILE LEU LYS ASN PHE CYS LYS VAL SEQRES 15 B 188 CYS GLY TYR LYS PHE GLU MODRES 7D95 5CS A 76 CYS MODIFIED RESIDUE MODRES 7D95 SNN A 109 ASN MODIFIED RESIDUE MODRES 7D95 5CS B 76 CYS MODIFIED RESIDUE MODRES 7D95 SNN B 109 ASN MODIFIED RESIDUE HET 5CS A 76 16 HET SNN A 109 8 HET 5CS B 76 16 HET SNN B 109 8 HETNAM 5CS 2-AMINO-3-(CYSTEIN-S-YL)-ISOXAZOLIDIN-5-YL-ACETIC ACID HETNAM SNN L-3-AMINOSUCCINIMIDE FORMUL 1 5CS 2(C8 H15 N3 O5 S) FORMUL 1 SNN 2(C4 H6 N2 O2) FORMUL 3 HOH *266(H2 O) HELIX 1 AA1 TYR A 11 ILE A 22 1 12 HELIX 2 AA2 PRO A 34 ASN A 41 1 8 HELIX 3 AA3 ASP A 54 ALA A 58 5 5 HELIX 4 AA4 LYS A 59 ALA A 68 1 10 HELIX 5 AA5 5CS A 76 TYR A 86 1 11 HELIX 6 AA6 GLU A 108 GLU A 108 5 1 HELIX 7 AA7 ASP A 110 LYS A 113 5 4 HELIX 8 AA8 TYR A 171 CYS A 183 1 13 HELIX 9 AA9 TYR B 11 ILE B 22 1 12 HELIX 10 AB1 PRO B 34 ASN B 41 1 8 HELIX 11 AB2 ASP B 54 ALA B 58 5 5 HELIX 12 AB3 LYS B 59 ALA B 68 1 10 HELIX 13 AB4 5CS B 76 TYR B 86 1 11 HELIX 14 AB5 GLU B 108 GLU B 108 5 1 HELIX 15 AB6 ASP B 110 LYS B 113 5 4 HELIX 16 AB7 TYR B 171 CYS B 183 1 13 SHEET 1 AA1 9 SER A 26 PRO A 30 0 SHEET 2 AA1 9 ILE A 2 ASP A 6 1 N ILE A 4 O LYS A 27 SHEET 3 AA1 9 GLY A 46 LEU A 49 1 O ILE A 48 N LEU A 5 SHEET 4 AA1 9 ILE A 72 ILE A 75 1 O LEU A 73 N LEU A 49 SHEET 5 AA1 9 ILE A 157 VAL A 160 1 O TYR A 158 N ILE A 72 SHEET 6 AA1 9 ALA A 149 HIS A 152 -1 N MET A 150 O GLY A 159 SHEET 7 AA1 9 PHE A 136 SER A 142 -1 N GLU A 137 O LYS A 151 SHEET 8 AA1 9 ALA A 99 VAL A 105 -1 N TYR A 104 O HIS A 141 SHEET 9 AA1 9 GLU A 118 ALA A 123 -1 O PHE A 119 N VAL A 103 SHEET 1 AA2 2 GLU A 89 ARG A 92 0 SHEET 2 AA2 2 ASP A 127 LYS A 131 -1 O LYS A 131 N GLU A 89 SHEET 1 AA3 9 SER B 26 PRO B 30 0 SHEET 2 AA3 9 ILE B 2 ASP B 6 1 N ASP B 6 O VAL B 29 SHEET 3 AA3 9 GLY B 46 LEU B 49 1 O ILE B 48 N LEU B 5 SHEET 4 AA3 9 ILE B 72 ILE B 75 1 O LEU B 73 N LEU B 49 SHEET 5 AA3 9 ILE B 157 VAL B 160 1 O TYR B 158 N ILE B 72 SHEET 6 AA3 9 ALA B 149 HIS B 152 -1 N HIS B 152 O ILE B 157 SHEET 7 AA3 9 PHE B 136 HIS B 141 -1 N GLU B 137 O LYS B 151 SHEET 8 AA3 9 ALA B 99 VAL B 105 -1 N TYR B 104 O HIS B 141 SHEET 9 AA3 9 GLU B 118 ALA B 123 -1 O PHE B 119 N VAL B 103 SHEET 1 AA4 2 GLU B 89 ARG B 92 0 SHEET 2 AA4 2 ASP B 127 LYS B 131 -1 O GLU B 128 N GLY B 91 LINK C ILE A 75 N 5CS A 76 1555 1555 1.48 LINK C 5CS A 76 N LEU A 77 1555 1555 1.51 LINK C GLU A 108 N SNN A 109 1555 1555 1.35 LINK N1 SNN A 109 CA ASP A 110 1555 1555 1.52 LINK C ILE B 75 N 5CS B 76 1555 1555 1.40 LINK C 5CS B 76 N LEU B 77 1555 1555 1.51 LINK C GLU B 108 N SNN B 109 1555 1555 1.52 LINK N1 SNN B 109 CA ASP B 110 1555 1555 1.51 CRYST1 65.350 65.350 97.371 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015302 0.008835 0.000000 0.00000 SCALE2 0.000000 0.017670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010270 0.00000