HEADER TRANSFERASE 13-OCT-20 7D9E TITLE GAMMA-GLUTAMYLTRANSPEPTIDASE FROM PSEUDOMONAS NITROREDUCENS COMPLEXED TITLE 2 WITH L-DON COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-GLUTAMYLTRANSFERASE 1 THREONINE PEPTIDASE. MEROPS COMPND 3 FAMILY T03; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: L-SUBUNIT; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GAMMA-GLUTAMYLTRANSFERASE 1 THREONINE PEPTIDASE. MEROPS COMPND 9 FAMILY T03; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: S-SUBUNIT; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS NITROREDUCENS; SOURCE 3 ORGANISM_TAXID: 46680; SOURCE 4 GENE: SAMN05216209_3923; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PSEUDOMONAS NITROREDUCENS; SOURCE 9 ORGANISM_TAXID: 46680; SOURCE 10 GENE: SAMN05216209_3923; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THEANINE SYNTHESIS, TRANSPEPTIDATION, ENZYME, PROTEIN ENGINEERING, KEYWDS 2 SUBSTRATE SPECIFICITY, REACTION SPECIFICITY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.HIBI,C.SANO,T.ITOH,M.WAKAYAMA REVDAT 2 29-NOV-23 7D9E 1 REMARK REVDAT 1 23-JUN-21 7D9E 0 JRNL AUTH C.SANO,T.ITOH,P.PHUMSOMBAT,J.HAYASHI,M.WAKAYAMA,T.HIBI JRNL TITL MUTAGENESIS AND STRUCTURE-BASED ANALYSIS OF THE ROLE OF JRNL TITL 2 TRYPTOPHAN525 OF GAMMA-GLUTAMYLTRANSPEPTIDASE FROM JRNL TITL 3 PSEUDOMONAS NITROREDUCENS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 534 286 2021 JRNL REFN ESSN 1090-2104 JRNL PMID 33288198 JRNL DOI 10.1016/J.BBRC.2020.11.093 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.HIBI,M.IMAOKA,Y.SHIMIZU,T.ITOH,M.WAKAYAMA REMARK 1 TITL CRYSTAL STRUCTURE ANALYSIS AND ENZYMATIC CHARACTERIZATION OF REMARK 1 TITL 2 GAMMA-GLUTAMYLTRANSPEPTIDASE FROM PSEUDOMONAS NITROREDUCENS. REMARK 1 REF BIOSCI BIOTECHNOL BIOCHEM V. 83 262 2019 REMARK 1 REFN ISSN 1347-6947 REMARK 1 PMID 30507352 REMARK 1 DOI 10.1080/09168451.2018.1547104 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 80565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1000 - 4.6100 1.00 2709 142 0.1632 0.1692 REMARK 3 2 4.6100 - 3.6600 1.00 2659 140 0.1219 0.1169 REMARK 3 3 3.6600 - 3.2000 1.00 2640 139 0.1402 0.1536 REMARK 3 4 3.1900 - 2.9000 1.00 2656 140 0.1308 0.1798 REMARK 3 5 2.9000 - 2.6900 1.00 2654 140 0.1300 0.1401 REMARK 3 6 2.6900 - 2.5400 1.00 2651 139 0.1315 0.1499 REMARK 3 7 2.5400 - 2.4100 1.00 2635 139 0.1314 0.1477 REMARK 3 8 2.4100 - 2.3000 1.00 2652 139 0.1256 0.1371 REMARK 3 9 2.3000 - 2.2200 1.00 2625 139 0.1261 0.1322 REMARK 3 10 2.2200 - 2.1400 1.00 2654 139 0.1316 0.1288 REMARK 3 11 2.1400 - 2.0700 1.00 2628 139 0.1374 0.1844 REMARK 3 12 2.0700 - 2.0100 1.00 2636 138 0.1360 0.1541 REMARK 3 13 2.0100 - 1.9600 1.00 2653 140 0.1308 0.1373 REMARK 3 14 1.9600 - 1.9100 1.00 2604 137 0.1360 0.1570 REMARK 3 15 1.9100 - 1.8700 1.00 2664 140 0.1427 0.1542 REMARK 3 16 1.8700 - 1.8300 1.00 2628 138 0.1512 0.1690 REMARK 3 17 1.8300 - 1.7900 1.00 2622 139 0.1542 0.1925 REMARK 3 18 1.7900 - 1.7600 1.00 2666 140 0.1577 0.2007 REMARK 3 19 1.7600 - 1.7300 1.00 2632 138 0.1546 0.1977 REMARK 3 20 1.7300 - 1.7000 1.00 2618 138 0.1562 0.1805 REMARK 3 21 1.7000 - 1.6700 1.00 2657 140 0.1629 0.1898 REMARK 3 22 1.6700 - 1.6400 1.00 2605 137 0.1685 0.1854 REMARK 3 23 1.6400 - 1.6200 1.00 2648 140 0.1723 0.2081 REMARK 3 24 1.6200 - 1.6000 1.00 2627 138 0.1801 0.1953 REMARK 3 25 1.6000 - 1.5800 1.00 2617 138 0.1834 0.2104 REMARK 3 26 1.5800 - 1.5600 1.00 2664 140 0.1986 0.2228 REMARK 3 27 1.5600 - 1.5400 1.00 2592 136 0.2063 0.1847 REMARK 3 28 1.5400 - 1.5200 1.00 2678 141 0.2263 0.2436 REMARK 3 29 1.5200 - 1.5000 0.99 2563 135 0.2330 0.2648 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.136 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4060 REMARK 3 ANGLE : 1.019 5527 REMARK 3 CHIRALITY : 0.079 617 REMARK 3 PLANARITY : 0.007 728 REMARK 3 DIHEDRAL : 14.386 1428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2681 8.3875 -5.9338 REMARK 3 T TENSOR REMARK 3 T11: 0.2103 T22: 0.2044 REMARK 3 T33: 0.3449 T12: 0.0729 REMARK 3 T13: -0.0364 T23: -0.0654 REMARK 3 L TENSOR REMARK 3 L11: 2.8849 L22: 2.4703 REMARK 3 L33: 2.2804 L12: -2.0922 REMARK 3 L13: 0.0447 L23: -0.2735 REMARK 3 S TENSOR REMARK 3 S11: -0.1368 S12: -0.2190 S13: 0.6133 REMARK 3 S21: 0.0003 S22: 0.0200 S23: 0.3456 REMARK 3 S31: -0.3210 S32: -0.4054 S33: 0.0624 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2424 -2.6002 -21.7749 REMARK 3 T TENSOR REMARK 3 T11: 0.1216 T22: 0.1599 REMARK 3 T33: 0.1264 T12: -0.0057 REMARK 3 T13: 0.0005 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 1.3131 L22: 1.0399 REMARK 3 L33: 1.4233 L12: 0.4055 REMARK 3 L13: 0.5353 L23: 0.2091 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: 0.2165 S13: 0.1330 REMARK 3 S21: -0.1036 S22: 0.0910 S23: -0.0034 REMARK 3 S31: -0.0205 S32: -0.0098 S33: -0.0225 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0355 0.3035 -13.4479 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.2161 REMARK 3 T33: 0.2478 T12: -0.0350 REMARK 3 T13: 0.0123 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.8322 L22: 4.0893 REMARK 3 L33: 2.9704 L12: -1.4014 REMARK 3 L13: 0.6105 L23: 1.7815 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: 0.0675 S13: 0.0272 REMARK 3 S21: 0.0483 S22: 0.1570 S23: -0.2469 REMARK 3 S31: -0.0680 S32: 0.3044 S33: -0.0881 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9558 -2.5274 -25.4237 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.2294 REMARK 3 T33: 0.1722 T12: 0.0113 REMARK 3 T13: -0.0179 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.5463 L22: 1.4786 REMARK 3 L33: 1.9401 L12: 0.9282 REMARK 3 L13: -0.3345 L23: -0.5237 REMARK 3 S TENSOR REMARK 3 S11: -0.1100 S12: 0.2651 S13: 0.1369 REMARK 3 S21: -0.1795 S22: 0.1225 S23: 0.0274 REMARK 3 S31: -0.0623 S32: -0.0900 S33: -0.0301 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 271 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6406 -28.2395 -8.8657 REMARK 3 T TENSOR REMARK 3 T11: 0.2644 T22: 0.1931 REMARK 3 T33: 0.1971 T12: -0.0780 REMARK 3 T13: -0.0350 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.2427 L22: 1.2730 REMARK 3 L33: 2.1967 L12: 0.4154 REMARK 3 L13: 0.3973 L23: -0.5454 REMARK 3 S TENSOR REMARK 3 S11: 0.1138 S12: 0.0361 S13: -0.2411 REMARK 3 S21: -0.0102 S22: 0.0663 S23: 0.0086 REMARK 3 S31: 0.4535 S32: -0.3845 S33: -0.1645 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 364 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4378 -1.6545 -16.2228 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: 0.1094 REMARK 3 T33: 0.1087 T12: 0.0045 REMARK 3 T13: -0.0135 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 4.0366 L22: 1.0556 REMARK 3 L33: 2.9653 L12: 0.2258 REMARK 3 L13: -1.6295 L23: 0.0841 REMARK 3 S TENSOR REMARK 3 S11: -0.0578 S12: 0.0954 S13: 0.1281 REMARK 3 S21: -0.0446 S22: 0.0464 S23: 0.0490 REMARK 3 S31: -0.0955 S32: -0.0517 S33: 0.0071 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 402 THROUGH 425 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0044 -20.5416 -22.6112 REMARK 3 T TENSOR REMARK 3 T11: 0.3231 T22: 0.2865 REMARK 3 T33: 0.2632 T12: 0.0176 REMARK 3 T13: 0.0000 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 6.1968 L22: 3.6425 REMARK 3 L33: 5.3155 L12: 1.9650 REMARK 3 L13: 1.9380 L23: -0.4033 REMARK 3 S TENSOR REMARK 3 S11: 0.2736 S12: -0.1537 S13: -0.6215 REMARK 3 S21: 0.4312 S22: -0.1321 S23: -0.3614 REMARK 3 S31: 0.8083 S32: 0.0888 S33: -0.1610 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 426 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3874 -10.8842 -14.1241 REMARK 3 T TENSOR REMARK 3 T11: 0.1246 T22: 0.1890 REMARK 3 T33: 0.1431 T12: -0.0122 REMARK 3 T13: 0.0028 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.9353 L22: 1.5766 REMARK 3 L33: 2.2226 L12: -0.2562 REMARK 3 L13: 0.1998 L23: 0.6550 REMARK 3 S TENSOR REMARK 3 S11: -0.0644 S12: 0.0941 S13: -0.0255 REMARK 3 S21: -0.0366 S22: 0.0101 S23: 0.1697 REMARK 3 S31: 0.0133 S32: -0.3088 S33: 0.0759 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 457 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4980 -18.3987 -0.7024 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.1236 REMARK 3 T33: 0.1139 T12: -0.0282 REMARK 3 T13: -0.0094 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.3389 L22: 2.8517 REMARK 3 L33: 2.0986 L12: 0.2201 REMARK 3 L13: 0.5652 L23: 0.5180 REMARK 3 S TENSOR REMARK 3 S11: 0.1185 S12: -0.0337 S13: -0.1671 REMARK 3 S21: 0.0398 S22: 0.0111 S23: -0.1295 REMARK 3 S31: 0.1729 S32: -0.1629 S33: -0.1075 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 507 THROUGH 516 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8449 -30.6156 7.5715 REMARK 3 T TENSOR REMARK 3 T11: 0.4257 T22: 0.1381 REMARK 3 T33: 0.3135 T12: -0.0381 REMARK 3 T13: -0.1228 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 4.2109 L22: 8.0145 REMARK 3 L33: 7.8710 L12: 1.8138 REMARK 3 L13: 2.9577 L23: 6.8983 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: -0.1628 S13: -0.3459 REMARK 3 S21: 0.5582 S22: 0.1567 S23: -0.3476 REMARK 3 S31: 0.6502 S32: -0.0045 S33: -0.0548 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 517 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7231 -18.7732 -3.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.2043 T22: 0.1717 REMARK 3 T33: 0.2445 T12: 0.0039 REMARK 3 T13: -0.0198 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.4256 L22: 7.7460 REMARK 3 L33: 1.3983 L12: -2.0347 REMARK 3 L13: 0.0073 L23: -0.7791 REMARK 3 S TENSOR REMARK 3 S11: 0.1778 S12: 0.1042 S13: 0.0400 REMARK 3 S21: -0.1748 S22: -0.1263 S23: -0.8966 REMARK 3 S31: 0.1235 S32: 0.0456 S33: -0.0520 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 531 THROUGH 544 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3588 -1.2950 1.4259 REMARK 3 T TENSOR REMARK 3 T11: 0.1742 T22: 0.3629 REMARK 3 T33: 0.1948 T12: 0.0608 REMARK 3 T13: 0.0300 T23: -0.0638 REMARK 3 L TENSOR REMARK 3 L11: 3.3429 L22: 5.6624 REMARK 3 L33: 2.4432 L12: -3.8454 REMARK 3 L13: -2.5075 L23: 2.0585 REMARK 3 S TENSOR REMARK 3 S11: -0.2194 S12: -0.4868 S13: 0.2093 REMARK 3 S21: 0.4082 S22: 0.0373 S23: 0.3152 REMARK 3 S31: -0.1377 S32: -0.5387 S33: 0.0571 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 545 THROUGH 556 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8446 0.7809 -0.2469 REMARK 3 T TENSOR REMARK 3 T11: 0.1811 T22: 0.1981 REMARK 3 T33: 0.1621 T12: 0.0129 REMARK 3 T13: -0.0305 T23: -0.0814 REMARK 3 L TENSOR REMARK 3 L11: 6.4118 L22: 3.9918 REMARK 3 L33: 2.5767 L12: -2.7579 REMARK 3 L13: -1.2692 L23: -0.5591 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: -0.2847 S13: 0.4863 REMARK 3 S21: 0.1494 S22: -0.1583 S23: -0.0372 REMARK 3 S31: -0.3136 S32: -0.2945 S33: 0.1143 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D9E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80575 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZJG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE MOTHER SOLUTION: 16% (W/V) PEG REMARK 280 8000, 15% (W/V) PEG 400, 0.1M HEPES PH7, 150MM GLY-GLY, 50 MM REMARK 280 LYS THE OBTAINED CRYSTAL WAS SOAKED INTO THE SOLUTION CONTAINING REMARK 280 50MM L-DON FOR 15 MIN BEFORE THE X-RAY DIFFRACTION MEASUREMENT., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.58000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 PHE A 4 REMARK 465 HIS A 5 REMARK 465 PHE A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 LEU A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 ALA A 14 REMARK 465 ILE A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 VAL A 22 REMARK 465 PHE A 23 REMARK 465 ALA A 24 REMARK 465 HIS A 362 REMARK 465 GLN A 363 REMARK 465 THR A 364 REMARK 465 THR A 365 REMARK 465 HIS A 366 REMARK 465 PHE A 367 REMARK 465 SER A 368 REMARK 465 ILE A 369 REMARK 465 VAL A 370 REMARK 465 ASP A 371 REMARK 465 PRO B 557 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 25 CG1 CG2 REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 LYS A 41 CE NZ REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 LYS A 87 NZ REMARK 470 LYS A 103 CE NZ REMARK 470 GLU A 109 OE1 OE2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 GLU A 115 CD OE1 OE2 REMARK 470 LYS A 143 CD CE NZ REMARK 470 LYS A 145 CD CE NZ REMARK 470 GLU A 148 OE1 OE2 REMARK 470 GLN A 166 CG CD OE1 NE2 REMARK 470 ASN A 179 CG OD1 ND2 REMARK 470 LYS A 181 CD CE NZ REMARK 470 LYS A 192 CE NZ REMARK 470 LYS A 204 CE NZ REMARK 470 LYS A 212 CD CE NZ REMARK 470 LYS A 219 CD CE NZ REMARK 470 GLU A 221 OE1 OE2 REMARK 470 LYS A 224 CD CE NZ REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 GLN A 246 CD OE1 NE2 REMARK 470 LYS A 248 CE NZ REMARK 470 GLN A 258 OE1 NE2 REMARK 470 LYS A 290 NZ REMARK 470 LYS A 298 CE NZ REMARK 470 LYS A 325 CD CE NZ REMARK 470 LYS A 335 CD CE NZ REMARK 470 LYS A 339 CD CE NZ REMARK 470 ASP A 347 OD1 OD2 REMARK 470 LYS A 354 CE NZ REMARK 470 ARG A 356 CZ NH1 NH2 REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 LYS B 372 CE NZ REMARK 470 TRP B 385 NE1 CE2 CE3 CZ2 CZ3 CH2 REMARK 470 LYS B 394 CE NZ REMARK 470 LYS B 410 CE NZ REMARK 470 VAL B 413 CG1 CG2 REMARK 470 ASP B 423 CG OD1 OD2 REMARK 470 GLU B 479 CG CD OE1 OE2 REMARK 470 GLU B 521 CG CD OE1 OE2 REMARK 470 ASN B 536 OD1 ND2 REMARK 470 LYS B 538 CG CD CE NZ REMARK 470 LEU B 540 CD1 CD2 REMARK 470 GLU B 541 CD OE1 OE2 REMARK 470 LYS B 556 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 364 O1J DON B 701 1.34 REMARK 500 CB THR B 364 O1J DON B 701 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 71 -48.29 -147.69 REMARK 500 ARG A 285 30.31 -98.72 REMARK 500 ASN B 384 -106.42 88.29 REMARK 500 SER B 422 -123.56 -143.33 REMARK 500 SER B 438 57.93 -141.73 REMARK 500 GLN B 490 34.87 -146.83 REMARK 500 LEU B 491 -54.22 72.56 REMARK 500 ASP B 529 71.46 -162.02 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7D9E A 1 371 UNP A0A239KXH0_9PSED DBREF2 7D9E A A0A239KXH0 1 371 DBREF1 7D9E B 364 557 UNP A0A239KXH0_9PSED DBREF2 7D9E B A0A239KXH0 364 557 SEQRES 1 A 371 MET ARG VAL PHE HIS PHE SER LYS LEU PRO LEU GLY VAL SEQRES 2 A 371 ALA ILE LEU ALA ALA SER SER SER VAL PHE ALA VAL THR SEQRES 3 A 371 LEU ASP GLY GLY ALA VAL ALA ALA PRO ASP GLN TYR GLY SEQRES 4 A 371 ALA LYS VAL ALA ALA GLU ILE LEU LYS LYS GLY GLY ASN SEQRES 5 A 371 ALA VAL ASP ALA ALA VAL ALA THR ALA PHE THR LEU ALA SEQRES 6 A 371 VAL THR TYR PRO GLU ALA GLY ASN ILE GLY GLY GLY GLY SEQRES 7 A 371 PHE MET THR LEU TYR VAL ASP GLY LYS PRO TYR PHE LEU SEQRES 8 A 371 ASP TYR ARG GLU ILE ALA PRO LYS ALA ALA THR LYS THR SEQRES 9 A 371 MET TYR LEU ASN GLU LYS GLY GLU VAL ILE GLU ASN LEU SEQRES 10 A 371 SER LEU VAL GLY ALA LYS ALA ALA GLY VAL PRO GLY THR SEQRES 11 A 371 VAL MET GLY LEU TRP GLU ALA HIS GLN ARG PHE GLY LYS SEQRES 12 A 371 LEU LYS TRP SER GLU LEU LEU THR PRO ALA ILE GLY TYR SEQRES 13 A 371 ALA GLN THR GLY PHE LYS VAL ALA ASP GLN GLN TYR GLN SEQRES 14 A 371 TYR ARG GLN ASP ALA ILE ALA LEU PHE ASN GLY LYS THR SEQRES 15 A 371 ASN PHE GLY ASP TYR PHE GLY THR MET LYS PRO GLY GLU SEQRES 16 A 371 VAL PHE LYS GLN PRO GLU LEU ALA LYS THR LEU GLU ARG SEQRES 17 A 371 ILE ALA ASP LYS GLY PRO ASP ASP PHE TYR LYS GLY GLU SEQRES 18 A 371 THR ALA LYS LEU LEU ILE ALA GLN MET LYS GLN ASP GLY SEQRES 19 A 371 GLY LEU ILE THR SER ASP ASP LEU VAL ASP TYR GLN ALA SEQRES 20 A 371 LYS TRP ARG GLU PRO MET ARG ILE ASP TRP GLN GLY ASN SEQRES 21 A 371 THR LEU TYR THR ALA PRO LEU PRO SER SER GLY GLY ILE SEQRES 22 A 371 ALA LEU ALA GLN LEU ILE GLY ILE LYS GLU GLN ARG ALA SEQRES 23 A 371 ALA ASP PHE LYS GLY VAL GLU LEU ASN SER ALA LYS TYR SEQRES 24 A 371 ILE HIS LEU LEU SER GLU ILE GLU LYS ARG VAL PHE ALA SEQRES 25 A 371 ASP ARG ALA ASP TYR LEU GLY ASP PRO GLN PHE SER LYS SEQRES 26 A 371 VAL PRO VAL ALA GLN LEU THR ASP PRO LYS TYR ILE ALA SEQRES 27 A 371 LYS ARG ALA GLY GLU VAL ASN PRO ASP ALA ILE SER ALA SEQRES 28 A 371 THR GLU LYS VAL ARG PRO GLY LEU GLU PRO HIS GLN THR SEQRES 29 A 371 THR HIS PHE SER ILE VAL ASP SEQRES 1 B 194 THR THR HIS PHE SER ILE VAL ASP LYS ASP GLY ASN ALA SEQRES 2 B 194 VAL SER ASN THR TYR THR LEU ASN TRP ASP PHE GLY SER SEQRES 3 B 194 GLY VAL VAL VAL LYS GLY ALA GLY PHE LEU LEU ASN ASP SEQRES 4 B 194 GLU MET ASP ASP PHE SER SER LYS PRO GLY VAL ALA ASN SEQRES 5 B 194 ALA PHE GLY VAL VAL GLY SER ASP ALA ASN ALA ILE GLU SEQRES 6 B 194 PRO GLY LYS ARG MET LEU SER SER MET SER PRO SER ILE SEQRES 7 B 194 VAL THR ARG ASP GLY HIS VAL SER LEU VAL LEU GLY THR SEQRES 8 B 194 PRO GLY GLY SER ARG ILE PHE THR SER ILE PHE GLN VAL SEQRES 9 B 194 LEU ASN ASN VAL TYR ASP PHE HIS LEU PRO LEU GLU LYS SEQRES 10 B 194 ALA VAL ALA ALA GLN ARG VAL HIS HIS GLN LEU LEU PRO SEQRES 11 B 194 LYS ASP THR ILE TYR TYR ASP ALA TYR ALA PRO LEU THR SEQRES 12 B 194 GLY LYS VAL ALA ASP GLU LEU LYS ALA MET GLY TYR THR SEQRES 13 B 194 LEU GLU ASP GLN GLY TRP ASN MET GLY ASP ILE GLN ALA SEQRES 14 B 194 ILE ARG VAL ASN GLY LYS ALA LEU GLU THR ALA SER ASP SEQRES 15 B 194 PRO ARG GLY ARG GLY VAL GLY MET VAL VAL LYS PRO HET GOL A 401 11 HET DON B 701 16 HET GOL B 702 14 HETNAM GOL GLYCEROL HETNAM DON 6-DIAZENYL-5-OXO-L-NORLEUCINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN DON (S)-2-AMINO-6-DIAZENYL-5-OXOHEXANOIC ACID FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 DON C6 H11 N3 O3 FORMUL 6 HOH *321(H2 O) HELIX 1 AA1 ASP A 36 LYS A 49 1 14 HELIX 2 AA2 ASN A 52 TYR A 68 1 17 HELIX 3 AA3 GLY A 121 ALA A 125 5 5 HELIX 4 AA4 GLY A 129 GLY A 142 1 14 HELIX 5 AA5 LYS A 145 GLY A 160 1 16 HELIX 6 AA6 ALA A 164 ASN A 179 1 16 HELIX 7 AA7 ASN A 183 GLY A 189 1 7 HELIX 8 AA8 GLN A 199 GLY A 213 1 15 HELIX 9 AA9 GLY A 213 GLY A 220 1 8 HELIX 10 AB1 GLY A 220 GLY A 234 1 15 HELIX 11 AB2 THR A 238 TYR A 245 1 8 HELIX 12 AB3 SER A 270 ARG A 285 1 16 HELIX 13 AB4 ARG A 285 LYS A 290 1 6 HELIX 14 AB5 SER A 296 LEU A 318 1 23 HELIX 15 AB6 PRO A 327 ASP A 333 1 7 HELIX 16 AB7 ASP A 333 VAL A 344 1 12 HELIX 17 AB8 ALA A 351 VAL A 355 5 5 HELIX 18 AB9 ASP B 402 PHE B 407 5 6 HELIX 19 AC1 GLY B 456 SER B 458 5 3 HELIX 20 AC2 ARG B 459 ASP B 473 1 15 HELIX 21 AC3 PRO B 477 ALA B 484 1 8 HELIX 22 AC4 THR B 506 GLY B 517 1 12 SHEET 1 AA1 7 LYS A 248 ARG A 250 0 SHEET 2 AA1 7 LYS A 87 TYR A 93 -1 N ASP A 92 O LYS A 248 SHEET 3 AA1 7 GLY A 77 VAL A 84 -1 N MET A 80 O LEU A 91 SHEET 4 AA1 7 ALA B 376 THR B 382 -1 O SER B 378 N THR A 81 SHEET 5 AA1 7 THR B 365 VAL B 370 -1 N PHE B 367 O ASN B 379 SHEET 6 AA1 7 GLY A 30 ALA A 34 -1 N ALA A 31 O VAL B 370 SHEET 7 AA1 7 VAL B 551 VAL B 555 -1 O VAL B 555 N GLY A 30 SHEET 1 AA2 2 PHE A 161 LYS A 162 0 SHEET 2 AA2 2 VAL A 196 PHE A 197 -1 O PHE A 197 N PHE A 161 SHEET 1 AA3 6 MET A 253 TRP A 257 0 SHEET 2 AA3 6 ASN A 260 THR A 264 -1 O LEU A 262 N ILE A 255 SHEET 3 AA3 6 SER B 440 ARG B 444 -1 O ILE B 441 N TYR A 263 SHEET 4 AA3 6 HIS B 447 GLY B 453 -1 O LEU B 450 N VAL B 442 SHEET 5 AA3 6 GLN B 531 ASN B 536 -1 O ILE B 533 N VAL B 451 SHEET 6 AA3 6 ALA B 539 SER B 544 -1 O ALA B 543 N ALA B 532 SHEET 1 AA4 3 HIS B 488 HIS B 489 0 SHEET 2 AA4 3 THR B 496 TYR B 499 -1 O TYR B 498 N HIS B 488 SHEET 3 AA4 3 THR B 519 ASP B 522 1 O THR B 519 N ILE B 497 LINK OG1 THR B 364 C1D DON B 701 1555 1555 1.38 CISPEP 1 LEU A 267 PRO A 268 0 11.94 CISPEP 2 LEU B 492 PRO B 493 0 4.47 CRYST1 49.170 99.160 53.990 90.00 102.60 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020338 0.000000 0.004545 0.00000 SCALE2 0.000000 0.010085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018979 0.00000