HEADER OXIDOREDUCTASE 13-OCT-20 7D9G TITLE SPDH SPERMIDINE DEHYDROGENASE NATIVE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMIDINE DEHYDROGENASE, SPDH; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.99.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 GENE: SPDH, PA3713; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SPDH, SPERMIDINE DEHYDROGENASE, HEME-CONTAINING MONOAMINE OXIDASE, KEYWDS 2 PSEUDOMONAS AERUGINOSA PAO1., OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.CHE,Q.ZHANG,M.BARTLAM REVDAT 3 29-NOV-23 7D9G 1 REMARK REVDAT 2 20-APR-22 7D9G 1 JRNL REVDAT 1 17-NOV-21 7D9G 0 JRNL AUTH S.CHE,Y.LIANG,Y.CHEN,W.WU,R.LIU,Q.ZHANG,M.BARTLAM JRNL TITL STRUCTURE OF PSEUDOMONAS AERUGINOSA SPERMIDINE JRNL TITL 2 DEHYDROGENASE: A POLYAMINE OXIDASE WITH A NOVEL HEME-BINDING JRNL TITL 3 FOLD. JRNL REF FEBS J. V. 289 1911 2022 JRNL REFN ISSN 1742-464X JRNL PMID 34741591 JRNL DOI 10.1111/FEBS.16264 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 45510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.390 REMARK 3 FREE R VALUE TEST SET COUNT : 3888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7800 - 7.2800 0.98 3009 140 0.1413 0.1806 REMARK 3 2 7.2800 - 5.7800 1.00 3054 144 0.1618 0.2316 REMARK 3 3 5.7800 - 5.0500 1.00 3076 135 0.1474 0.1847 REMARK 3 4 5.0500 - 4.5900 1.00 3029 138 0.1372 0.1878 REMARK 3 5 4.5900 - 4.2600 1.00 3096 142 0.1270 0.1477 REMARK 3 6 4.2600 - 4.0100 1.00 3099 141 0.1402 0.2042 REMARK 3 7 4.0100 - 3.8100 1.00 3048 139 0.1572 0.2373 REMARK 3 8 3.8100 - 3.6400 1.00 3053 140 0.1623 0.2490 REMARK 3 9 3.6400 - 3.5000 1.00 3082 139 0.1728 0.2269 REMARK 3 10 3.5000 - 3.3800 1.00 3075 142 0.1861 0.2852 REMARK 3 11 3.3800 - 3.2800 1.00 3073 141 0.1932 0.3174 REMARK 3 12 3.2800 - 3.1800 1.00 3048 139 0.1983 0.2364 REMARK 3 13 3.1800 - 3.1000 1.00 3082 142 0.2101 0.2784 REMARK 3 14 3.1000 - 3.0200 1.00 3026 139 0.2059 0.2512 REMARK 3 15 3.0200 - 2.9500 1.00 3032 137 0.2189 0.3120 REMARK 3 16 2.9500 - 2.8900 1.00 3080 142 0.2132 0.2938 REMARK 3 17 2.8900 - 2.8300 1.00 3090 145 0.2211 0.3329 REMARK 3 18 2.8300 - 2.7800 1.00 3031 139 0.2203 0.2753 REMARK 3 19 2.7800 - 2.7300 1.00 3095 144 0.2214 0.2676 REMARK 3 20 2.7300 - 2.6800 1.00 3028 140 0.2277 0.3007 REMARK 3 21 2.6800 - 2.6400 1.00 3066 142 0.2283 0.2744 REMARK 3 22 2.6400 - 2.6000 0.99 3042 141 0.2369 0.3588 REMARK 3 23 2.6000 - 2.5600 0.99 3047 139 0.2340 0.3105 REMARK 3 24 2.5600 - 2.5300 0.98 3041 137 0.2378 0.3047 REMARK 3 25 2.5300 - 2.4900 0.97 2979 138 0.2456 0.2629 REMARK 3 26 2.4900 - 2.4600 0.95 2890 131 0.2409 0.3157 REMARK 3 27 2.4600 - 2.4300 0.91 2847 135 0.2442 0.2739 REMARK 3 28 2.4300 - 2.4000 0.86 2546 117 0.2654 0.3334 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.294 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.042 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 9688 REMARK 3 ANGLE : 0.988 13178 REMARK 3 CHIRALITY : 0.052 1357 REMARK 3 PLANARITY : 0.007 1717 REMARK 3 DIHEDRAL : 16.451 3516 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 33 THROUGH 619) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1937 -7.9129 -7.6625 REMARK 3 T TENSOR REMARK 3 T11: 0.2269 T22: 0.2202 REMARK 3 T33: 0.2096 T12: 0.0000 REMARK 3 T13: 0.0062 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 1.1258 L22: 0.3783 REMARK 3 L33: 0.3153 L12: 0.2311 REMARK 3 L13: 0.2818 L23: 0.1043 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: -0.0579 S13: -0.0375 REMARK 3 S21: 0.0428 S22: -0.0182 S23: -0.0097 REMARK 3 S31: 0.0206 S32: -0.0507 S33: -0.0432 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 32 THROUGH 619) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0920 -3.8491 -55.4639 REMARK 3 T TENSOR REMARK 3 T11: 0.2044 T22: 0.2024 REMARK 3 T33: 0.2402 T12: 0.0014 REMARK 3 T13: 0.0011 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.8616 L22: 0.3801 REMARK 3 L33: 0.3805 L12: 0.0219 REMARK 3 L13: 0.2400 L23: -0.0803 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.0587 S13: -0.0775 REMARK 3 S21: -0.0394 S22: -0.0097 S23: 0.0079 REMARK 3 S31: 0.0710 S32: 0.0128 S33: -0.0115 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45554 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7D9F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS TRIS PH 6.5, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.86550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ILE A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 ASP A 7 REMARK 465 PHE A 8 REMARK 465 LEU A 9 REMARK 465 ASN A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 THR A 15 REMARK 465 ILE A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 THR A 21 REMARK 465 PRO A 22 REMARK 465 ALA A 23 REMARK 465 GLU A 24 REMARK 465 ILE A 25 REMARK 465 LEU A 26 REMARK 465 ARG A 27 REMARK 465 ALA A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 GLY A 31 REMARK 465 GLY A 32 REMARK 465 PRO A 312 REMARK 465 SER A 313 REMARK 465 GLU A 314 REMARK 465 GLY A 620 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ILE B 3 REMARK 465 SER B 4 REMARK 465 ARG B 5 REMARK 465 ARG B 6 REMARK 465 ASP B 7 REMARK 465 PHE B 8 REMARK 465 LEU B 9 REMARK 465 ASN B 10 REMARK 465 GLY B 11 REMARK 465 VAL B 12 REMARK 465 ALA B 13 REMARK 465 LEU B 14 REMARK 465 THR B 15 REMARK 465 ILE B 16 REMARK 465 ALA B 17 REMARK 465 ALA B 18 REMARK 465 GLY B 19 REMARK 465 LEU B 20 REMARK 465 THR B 21 REMARK 465 PRO B 22 REMARK 465 ALA B 23 REMARK 465 GLU B 24 REMARK 465 ILE B 25 REMARK 465 LEU B 26 REMARK 465 ARG B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 465 PRO B 30 REMARK 465 GLY B 31 REMARK 465 GLY B 620 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 35 86.29 -156.03 REMARK 500 ARG A 43 -152.71 -124.18 REMARK 500 SER A 137 63.30 25.74 REMARK 500 TRP A 560 71.86 -102.83 REMARK 500 ALA A 595 -140.79 -113.67 REMARK 500 ASN A 596 148.77 73.86 REMARK 500 TYR B 35 85.61 -151.05 REMARK 500 ARG B 43 -146.94 -116.43 REMARK 500 SER B 132 109.22 -46.34 REMARK 500 SER B 137 55.67 32.12 REMARK 500 ALA B 506 20.28 -142.98 REMARK 500 ALA B 595 -142.49 -117.49 REMARK 500 ASN B 596 149.35 79.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 702 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 54 NE2 REMARK 620 2 HEM A 702 NA 90.9 REMARK 620 3 HEM A 702 NB 81.5 87.4 REMARK 620 4 HEM A 702 NC 80.6 170.3 86.6 REMARK 620 5 HEM A 702 ND 93.2 93.1 174.7 92.1 REMARK 620 6 HIS A 562 NE2 158.8 110.3 98.1 78.2 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 702 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 54 NE2 REMARK 620 2 HEM B 702 NA 87.4 REMARK 620 3 HEM B 702 NB 79.3 87.7 REMARK 620 4 HEM B 702 NC 85.9 171.8 86.4 REMARK 620 5 HEM B 702 ND 97.6 93.0 176.8 92.5 REMARK 620 6 HIS B 562 NE2 165.0 104.1 91.5 81.7 91.4 REMARK 620 N 1 2 3 4 5 DBREF 7D9G A 1 620 UNP Q9HXS8 Q9HXS8_PSEAE 1 620 DBREF 7D9G B 1 620 UNP Q9HXS8 Q9HXS8_PSEAE 1 620 SEQRES 1 A 620 MET THR ILE SER ARG ARG ASP PHE LEU ASN GLY VAL ALA SEQRES 2 A 620 LEU THR ILE ALA ALA GLY LEU THR PRO ALA GLU ILE LEU SEQRES 3 A 620 ARG ALA ALA PRO GLY GLY ARG TYR TYR PRO PRO ALA LEU SEQRES 4 A 620 THR GLY LEU ARG GLY SER HIS PRO GLY ALA PHE GLU VAL SEQRES 5 A 620 ALA HIS GLN MET GLY TRP GLU LYS LYS THR PHE ASP VAL SEQRES 6 A 620 ASP HIS LEU PRO ILE GLU GLU GLU TYR ASP LEU VAL VAL SEQRES 7 A 620 VAL GLY GLY GLY ILE SER GLY LEU ALA ALA ALA TRP PHE SEQRES 8 A 620 TYR ARG GLU ARG HIS PRO ALA ALA ARG ILE LEU VAL ILE SEQRES 9 A 620 GLU ASN HIS ASP ASP PHE GLY GLY HIS ALA LYS ARG ASN SEQRES 10 A 620 GLU PHE GLN ALA GLY GLY ARG THR ILE LEU GLY TYR GLY SEQRES 11 A 620 GLY SER GLU SER LEU GLN SER PRO ASN ALA LEU TYR SER SEQRES 12 A 620 GLU ASP ALA LYS HIS LEU LEU LYS ARG LEU GLY VAL GLU SEQRES 13 A 620 LEU LYS ARG PHE GLU THR ALA PHE ASP THR ASP PHE TYR SEQRES 14 A 620 PRO GLY LEU GLY LEU SER ARG ALA VAL PHE PHE ASP LYS SEQRES 15 A 620 ALA SER PHE GLY VAL ASP LYS LEU VAL SER GLY ASP PRO SEQRES 16 A 620 THR PRO MET VAL ALA ASP GLU VAL PRO ARG ASP ARG LEU SEQRES 17 A 620 ASN ALA ARG SER TRP ARG ALA PHE ILE GLY ASP PHE PRO SEQRES 18 A 620 LEU SER ARG GLU ASP ARG GLU ALA LEU ILE ALA LEU TYR SEQRES 19 A 620 GLU SER PRO ARG ASP TYR LEU ALA GLY LYS SER VAL GLU SEQRES 20 A 620 GLU LYS GLU THR TYR LEU ALA LYS THR SER TYR ARG ASP SEQRES 21 A 620 TYR LEU LEU LYS ASN VAL GLY LEU SER GLU THR SER VAL SEQRES 22 A 620 LYS TYR PHE GLN GLY ARG SER ASN ASP PHE SER ALA LEU SEQRES 23 A 620 GLY ALA ASP ALA LEU PRO ALA ALA ASP ALA TYR ALA ALA SEQRES 24 A 620 GLY PHE PRO GLY PHE ASP ALA LEU GLY LEU PRO GLN PRO SEQRES 25 A 620 SER GLU GLU ALA GLN ALA GLU MET ASP GLU PRO TYR ILE SEQRES 26 A 620 TYR HIS PHE PRO ASP GLY ASN ALA SER LEU ALA ARG LEU SEQRES 27 A 620 MET VAL ARG ASP LEU ILE PRO ALA VAL ALA PRO GLY ARG SEQRES 28 A 620 GLY MET GLU ASP ILE VAL MET ALA ARG PHE ASP TYR SER SEQRES 29 A 620 LYS LEU ASP LEU ALA GLY HIS PRO VAL ARG LEU ARG LEU SEQRES 30 A 620 ASN SER THR ALA VAL SER VAL ARG ASN ARG ALA GLY GLY SEQRES 31 A 620 VAL ASP VAL GLY TYR SER ARG ALA GLY ARG LEU HIS ARG SEQRES 32 A 620 VAL ARG GLY LYS HIS CYS VAL MET ALA CYS TYR ASN MET SEQRES 33 A 620 MET VAL PRO TYR LEU LEU ARG ASP LEU SER GLU GLU GLN SEQRES 34 A 620 ALA HIS ALA LEU SER GLN ASN VAL LYS PHE PRO LEU VAL SEQRES 35 A 620 TYR THR LYS VAL LEU LEU ARG ASN TRP GLN ALA TRP LYS SEQRES 36 A 620 THR LEU GLY ILE HIS GLU ILE TYR ALA PRO THR LEU PRO SEQRES 37 A 620 TYR SER ARG ILE LYS LEU ASP PHE PRO VAL ASP LEU GLY SEQRES 38 A 620 SER TYR ARG HIS PRO ARG ASP PRO ARG GLN PRO ILE GLY SEQRES 39 A 620 VAL HIS MET VAL TYR VAL PRO THR THR PRO ASN ALA GLY SEQRES 40 A 620 MET ASP ALA ARG THR GLN ALA ARG VAL GLY ARG SER LYS SEQRES 41 A 620 LEU TYR ALA MET SER PHE GLU GLN LEU GLU LYS ASP ILE SEQRES 42 A 620 ARG ASP GLN LEU GLN ALA MET LEU GLY PRO ALA GLY PHE SEQRES 43 A 620 ASP HIS ARG ARG ASP ILE THR GLY ILE THR VAL ASN ARG SEQRES 44 A 620 TRP SER HIS GLY TYR SER TYR PHE MET ASN THR LEU TYR SEQRES 45 A 620 ASP ASP GLU ALA GLU SER GLU ALA LEU MET GLU LEU ALA SEQRES 46 A 620 ARG SER LYS VAL GLY ASN VAL ALA ILE ALA ASN SER ASP SEQRES 47 A 620 ALA ALA TRP ASP ALA TYR ALA HIS ALA ALA ILE ASP GLN SEQRES 48 A 620 ALA VAL ARG ALA VAL ARG GLU LEU GLY SEQRES 1 B 620 MET THR ILE SER ARG ARG ASP PHE LEU ASN GLY VAL ALA SEQRES 2 B 620 LEU THR ILE ALA ALA GLY LEU THR PRO ALA GLU ILE LEU SEQRES 3 B 620 ARG ALA ALA PRO GLY GLY ARG TYR TYR PRO PRO ALA LEU SEQRES 4 B 620 THR GLY LEU ARG GLY SER HIS PRO GLY ALA PHE GLU VAL SEQRES 5 B 620 ALA HIS GLN MET GLY TRP GLU LYS LYS THR PHE ASP VAL SEQRES 6 B 620 ASP HIS LEU PRO ILE GLU GLU GLU TYR ASP LEU VAL VAL SEQRES 7 B 620 VAL GLY GLY GLY ILE SER GLY LEU ALA ALA ALA TRP PHE SEQRES 8 B 620 TYR ARG GLU ARG HIS PRO ALA ALA ARG ILE LEU VAL ILE SEQRES 9 B 620 GLU ASN HIS ASP ASP PHE GLY GLY HIS ALA LYS ARG ASN SEQRES 10 B 620 GLU PHE GLN ALA GLY GLY ARG THR ILE LEU GLY TYR GLY SEQRES 11 B 620 GLY SER GLU SER LEU GLN SER PRO ASN ALA LEU TYR SER SEQRES 12 B 620 GLU ASP ALA LYS HIS LEU LEU LYS ARG LEU GLY VAL GLU SEQRES 13 B 620 LEU LYS ARG PHE GLU THR ALA PHE ASP THR ASP PHE TYR SEQRES 14 B 620 PRO GLY LEU GLY LEU SER ARG ALA VAL PHE PHE ASP LYS SEQRES 15 B 620 ALA SER PHE GLY VAL ASP LYS LEU VAL SER GLY ASP PRO SEQRES 16 B 620 THR PRO MET VAL ALA ASP GLU VAL PRO ARG ASP ARG LEU SEQRES 17 B 620 ASN ALA ARG SER TRP ARG ALA PHE ILE GLY ASP PHE PRO SEQRES 18 B 620 LEU SER ARG GLU ASP ARG GLU ALA LEU ILE ALA LEU TYR SEQRES 19 B 620 GLU SER PRO ARG ASP TYR LEU ALA GLY LYS SER VAL GLU SEQRES 20 B 620 GLU LYS GLU THR TYR LEU ALA LYS THR SER TYR ARG ASP SEQRES 21 B 620 TYR LEU LEU LYS ASN VAL GLY LEU SER GLU THR SER VAL SEQRES 22 B 620 LYS TYR PHE GLN GLY ARG SER ASN ASP PHE SER ALA LEU SEQRES 23 B 620 GLY ALA ASP ALA LEU PRO ALA ALA ASP ALA TYR ALA ALA SEQRES 24 B 620 GLY PHE PRO GLY PHE ASP ALA LEU GLY LEU PRO GLN PRO SEQRES 25 B 620 SER GLU GLU ALA GLN ALA GLU MET ASP GLU PRO TYR ILE SEQRES 26 B 620 TYR HIS PHE PRO ASP GLY ASN ALA SER LEU ALA ARG LEU SEQRES 27 B 620 MET VAL ARG ASP LEU ILE PRO ALA VAL ALA PRO GLY ARG SEQRES 28 B 620 GLY MET GLU ASP ILE VAL MET ALA ARG PHE ASP TYR SER SEQRES 29 B 620 LYS LEU ASP LEU ALA GLY HIS PRO VAL ARG LEU ARG LEU SEQRES 30 B 620 ASN SER THR ALA VAL SER VAL ARG ASN ARG ALA GLY GLY SEQRES 31 B 620 VAL ASP VAL GLY TYR SER ARG ALA GLY ARG LEU HIS ARG SEQRES 32 B 620 VAL ARG GLY LYS HIS CYS VAL MET ALA CYS TYR ASN MET SEQRES 33 B 620 MET VAL PRO TYR LEU LEU ARG ASP LEU SER GLU GLU GLN SEQRES 34 B 620 ALA HIS ALA LEU SER GLN ASN VAL LYS PHE PRO LEU VAL SEQRES 35 B 620 TYR THR LYS VAL LEU LEU ARG ASN TRP GLN ALA TRP LYS SEQRES 36 B 620 THR LEU GLY ILE HIS GLU ILE TYR ALA PRO THR LEU PRO SEQRES 37 B 620 TYR SER ARG ILE LYS LEU ASP PHE PRO VAL ASP LEU GLY SEQRES 38 B 620 SER TYR ARG HIS PRO ARG ASP PRO ARG GLN PRO ILE GLY SEQRES 39 B 620 VAL HIS MET VAL TYR VAL PRO THR THR PRO ASN ALA GLY SEQRES 40 B 620 MET ASP ALA ARG THR GLN ALA ARG VAL GLY ARG SER LYS SEQRES 41 B 620 LEU TYR ALA MET SER PHE GLU GLN LEU GLU LYS ASP ILE SEQRES 42 B 620 ARG ASP GLN LEU GLN ALA MET LEU GLY PRO ALA GLY PHE SEQRES 43 B 620 ASP HIS ARG ARG ASP ILE THR GLY ILE THR VAL ASN ARG SEQRES 44 B 620 TRP SER HIS GLY TYR SER TYR PHE MET ASN THR LEU TYR SEQRES 45 B 620 ASP ASP GLU ALA GLU SER GLU ALA LEU MET GLU LEU ALA SEQRES 46 B 620 ARG SER LYS VAL GLY ASN VAL ALA ILE ALA ASN SER ASP SEQRES 47 B 620 ALA ALA TRP ASP ALA TYR ALA HIS ALA ALA ILE ASP GLN SEQRES 48 B 620 ALA VAL ARG ALA VAL ARG GLU LEU GLY HET FAD A 701 53 HET HEM A 702 43 HET FAD B 701 53 HET HEM B 702 43 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 HEM 2(C34 H32 FE N4 O4) FORMUL 7 HOH *597(H2 O) HELIX 1 AA1 TYR A 35 LEU A 39 5 5 HELIX 2 AA2 PHE A 50 TRP A 58 1 9 HELIX 3 AA3 GLY A 82 HIS A 96 1 15 HELIX 4 AA4 SER A 137 TYR A 142 1 6 HELIX 5 AA5 SER A 143 LEU A 153 1 11 HELIX 6 AA6 GLU A 156 LYS A 158 5 3 HELIX 7 AA7 ARG A 159 PHE A 164 1 6 HELIX 8 AA8 ASP A 167 LEU A 172 1 6 HELIX 9 AA9 ASP A 181 GLY A 186 1 6 HELIX 10 AB1 PRO A 204 LEU A 208 5 5 HELIX 11 AB2 SER A 212 ASP A 219 1 8 HELIX 12 AB3 SER A 223 SER A 236 1 14 HELIX 13 AB4 SER A 245 THR A 256 1 12 HELIX 14 AB5 SER A 257 ASN A 265 1 9 HELIX 15 AB6 SER A 269 LYS A 274 1 6 HELIX 16 AB7 TYR A 275 GLN A 277 5 3 HELIX 17 AB8 SER A 280 ALA A 285 1 6 HELIX 18 AB9 PRO A 292 ALA A 299 1 8 HELIX 19 AC1 ALA A 316 ASP A 321 1 6 HELIX 20 AC2 ASN A 332 ILE A 344 1 13 HELIX 21 AC3 PRO A 345 ALA A 348 5 4 HELIX 22 AC4 GLY A 352 VAL A 357 1 6 HELIX 23 AC5 ASP A 362 LEU A 366 5 5 HELIX 24 AC6 TYR A 414 MET A 416 5 3 HELIX 25 AC7 MET A 417 LEU A 422 1 6 HELIX 26 AC8 SER A 426 GLN A 435 1 10 HELIX 27 AC9 TRP A 451 LEU A 457 1 7 HELIX 28 AD1 ASP A 509 ALA A 523 1 15 HELIX 29 AD2 SER A 525 GLY A 542 1 18 HELIX 30 AD3 PRO A 543 GLY A 545 5 3 HELIX 31 AD4 ASP A 547 ASP A 551 1 5 HELIX 32 AD5 ASP A 574 ARG A 586 1 13 HELIX 33 AD6 ASN A 596 TRP A 601 5 6 HELIX 34 AD7 TYR A 604 LEU A 619 1 16 HELIX 35 AD8 TYR B 35 LEU B 39 5 5 HELIX 36 AD9 PHE B 50 TRP B 58 1 9 HELIX 37 AE1 GLY B 82 HIS B 96 1 15 HELIX 38 AE2 SER B 137 TYR B 142 1 6 HELIX 39 AE3 SER B 143 LEU B 153 1 11 HELIX 40 AE4 LYS B 158 PHE B 164 1 7 HELIX 41 AE5 TYR B 169 GLY B 173 5 5 HELIX 42 AE6 ASP B 181 GLY B 186 1 6 HELIX 43 AE7 PRO B 204 LEU B 208 5 5 HELIX 44 AE8 SER B 212 GLY B 218 1 7 HELIX 45 AE9 SER B 223 SER B 236 1 14 HELIX 46 AF1 SER B 245 THR B 256 1 12 HELIX 47 AF2 SER B 257 ASN B 265 1 9 HELIX 48 AF3 SER B 269 LYS B 274 1 6 HELIX 49 AF4 TYR B 275 GLN B 277 5 3 HELIX 50 AF5 SER B 280 ALA B 285 1 6 HELIX 51 AF6 GLY B 287 LEU B 291 5 5 HELIX 52 AF7 PRO B 292 ALA B 299 1 8 HELIX 53 AF8 SER B 313 GLU B 322 1 10 HELIX 54 AF9 ASN B 332 ILE B 344 1 13 HELIX 55 AG1 PRO B 345 ALA B 348 5 4 HELIX 56 AG2 ASP B 362 LEU B 366 5 5 HELIX 57 AG3 MET B 417 LEU B 422 1 6 HELIX 58 AG4 SER B 426 GLN B 435 1 10 HELIX 59 AG5 TRP B 451 GLY B 458 1 8 HELIX 60 AG6 ASP B 509 MET B 524 1 16 HELIX 61 AG7 SER B 525 GLY B 542 1 18 HELIX 62 AG8 PRO B 543 GLY B 545 5 3 HELIX 63 AG9 ASP B 547 ASP B 551 1 5 HELIX 64 AH1 ASP B 574 ARG B 586 1 13 HELIX 65 AH2 ASN B 596 TRP B 601 5 6 HELIX 66 AH3 TYR B 604 GLU B 618 1 15 SHEET 1 AA1 8 GLY A 41 GLY A 44 0 SHEET 2 AA1 8 ILE A 552 TYR A 564 1 O VAL A 557 N ARG A 43 SHEET 3 AA1 8 PHE A 439 LEU A 448 -1 N LYS A 445 O THR A 556 SHEET 4 AA1 8 ILE A 493 TYR A 499 -1 O MET A 497 N THR A 444 SHEET 5 AA1 8 TYR A 469 LEU A 474 -1 N LYS A 473 O HIS A 496 SHEET 6 AA1 8 ILE A 459 TYR A 463 -1 N ILE A 462 O ILE A 472 SHEET 7 AA1 8 SER A 175 PHE A 180 1 N PHE A 179 O TYR A 463 SHEET 8 AA1 8 LYS A 189 SER A 192 -1 O VAL A 191 N VAL A 178 SHEET 1 AA2 6 VAL A 373 ARG A 376 0 SHEET 2 AA2 6 ILE A 101 ILE A 104 1 N VAL A 103 O ARG A 376 SHEET 3 AA2 6 GLU A 73 VAL A 79 1 N VAL A 78 O LEU A 102 SHEET 4 AA2 6 ARG A 400 MET A 411 1 O HIS A 408 N VAL A 77 SHEET 5 AA2 6 GLY A 390 ARG A 397 -1 N VAL A 391 O GLY A 406 SHEET 6 AA2 6 SER A 379 ARG A 387 -1 N ARG A 385 O ASP A 392 SHEET 1 AA3 5 VAL A 373 ARG A 376 0 SHEET 2 AA3 5 ILE A 101 ILE A 104 1 N VAL A 103 O ARG A 376 SHEET 3 AA3 5 GLU A 73 VAL A 79 1 N VAL A 78 O LEU A 102 SHEET 4 AA3 5 ARG A 400 MET A 411 1 O HIS A 408 N VAL A 77 SHEET 5 AA3 5 VAL A 592 ILE A 594 1 O ALA A 593 N MET A 411 SHEET 1 AA4 2 ARG A 116 ALA A 121 0 SHEET 2 AA4 2 ARG A 124 TYR A 129 -1 O GLY A 128 N ASN A 117 SHEET 1 AA5 8 GLY B 41 GLY B 44 0 SHEET 2 AA5 8 ILE B 552 TRP B 560 1 O VAL B 557 N GLY B 41 SHEET 3 AA5 8 LEU B 441 LEU B 448 -1 N LYS B 445 O THR B 556 SHEET 4 AA5 8 ILE B 493 TYR B 499 -1 O MET B 497 N THR B 444 SHEET 5 AA5 8 TYR B 469 LEU B 474 -1 N LYS B 473 O HIS B 496 SHEET 6 AA5 8 ILE B 459 TYR B 463 -1 N ILE B 462 O ILE B 472 SHEET 7 AA5 8 SER B 175 PHE B 180 1 N PHE B 179 O TYR B 463 SHEET 8 AA5 8 LYS B 189 SER B 192 -1 O LYS B 189 N PHE B 180 SHEET 1 AA6 6 VAL B 373 ARG B 376 0 SHEET 2 AA6 6 ILE B 101 ILE B 104 1 N VAL B 103 O ARG B 376 SHEET 3 AA6 6 GLU B 73 VAL B 79 1 N VAL B 78 O LEU B 102 SHEET 4 AA6 6 ARG B 400 MET B 411 1 O HIS B 408 N ASP B 75 SHEET 5 AA6 6 GLY B 390 ARG B 397 -1 N VAL B 391 O GLY B 406 SHEET 6 AA6 6 SER B 379 ARG B 387 -1 N ARG B 385 O ASP B 392 SHEET 1 AA7 5 VAL B 373 ARG B 376 0 SHEET 2 AA7 5 ILE B 101 ILE B 104 1 N VAL B 103 O ARG B 376 SHEET 3 AA7 5 GLU B 73 VAL B 79 1 N VAL B 78 O LEU B 102 SHEET 4 AA7 5 ARG B 400 MET B 411 1 O HIS B 408 N ASP B 75 SHEET 5 AA7 5 VAL B 592 ILE B 594 1 O ALA B 593 N MET B 411 SHEET 1 AA8 2 ARG B 116 ALA B 121 0 SHEET 2 AA8 2 ARG B 124 TYR B 129 -1 O GLY B 128 N ASN B 117 LINK NE2 HIS A 54 FE HEM A 702 1555 1555 2.37 LINK NE2 HIS A 562 FE HEM A 702 1555 1555 2.21 LINK NE2 HIS B 54 FE HEM B 702 1555 1555 2.28 LINK NE2 HIS B 562 FE HEM B 702 1555 1555 2.25 CRYST1 69.399 85.731 100.654 90.00 98.45 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014409 0.000000 0.002140 0.00000 SCALE2 0.000000 0.011664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010044 0.00000