HEADER IMMUNE SYSTEM 14-OCT-20 7D9Z TITLE CRYSTAL STRUCTURE OF ANTI-BASIGIN FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN OF ANTIBODY FAB FRAGMENT; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN OF ANTIBODY FAB FRAGMENT; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_TAXID: 9986; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 8 ORGANISM_TAXID: 9986; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FAB, ANTIBODY, BASIGIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.SAKURAGI,R.KANAI,H.NARITA,E.ONISHI,T.MIYAZAKI,T.BABA,A.NAKAGAWA, AUTHOR 2 C.TOYOSHIMA,S.NAGATA REVDAT 2 29-NOV-23 7D9Z 1 REMARK REVDAT 1 20-OCT-21 7D9Z 0 JRNL AUTH T.SAKURAGI,R.KANAI,A.TSUTSUMI,H.NARITA,E.ONISHI,K.NISHINO, JRNL AUTH 2 T.MIYAZAKI,T.BABA,H.KOSAKO,A.NAKAGAWA,M.KIKKAWA,C.TOYOSHIMA, JRNL AUTH 3 S.NAGATA JRNL TITL THE TERTIARY STRUCTURE OF THE HUMAN XKR8-BASIGIN COMPLEX JRNL TITL 2 THAT SCRAMBLES PHOSPHOLIPIDS AT PLASMA MEMBRANES. JRNL REF NAT.STRUCT.MOL.BIOL. V. 28 825 2021 JRNL REFN ESSN 1545-9985 JRNL PMID 34625749 JRNL DOI 10.1038/S41594-021-00665-8 REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC1_4016 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.6 REMARK 3 NUMBER OF REFLECTIONS : 139266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 6810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4000 - 3.4900 0.96 5411 263 0.1350 0.1449 REMARK 3 2 3.4900 - 2.7700 0.98 5382 258 0.1321 0.1517 REMARK 3 3 2.7700 - 2.4200 0.98 5395 245 0.1295 0.1544 REMARK 3 4 2.4200 - 2.2000 0.99 5406 251 0.1163 0.1701 REMARK 3 5 2.2000 - 2.0400 0.99 5393 265 0.1062 0.1435 REMARK 3 6 2.0400 - 1.9200 1.00 5424 270 0.1017 0.1295 REMARK 3 7 1.9200 - 1.8200 1.00 5356 308 0.1003 0.1249 REMARK 3 8 1.8200 - 1.7500 1.00 5422 305 0.0983 0.1304 REMARK 3 9 1.7500 - 1.6800 0.99 5364 236 0.1022 0.1409 REMARK 3 10 1.6800 - 1.6200 0.99 5348 297 0.1005 0.1330 REMARK 3 11 1.6200 - 1.5700 0.99 5338 283 0.0973 0.1302 REMARK 3 12 1.5700 - 1.5200 0.99 5370 284 0.0937 0.1389 REMARK 3 13 1.5200 - 1.4800 0.99 5342 291 0.0958 0.1387 REMARK 3 14 1.4800 - 1.4500 0.99 5366 288 0.1032 0.1596 REMARK 3 15 1.4500 - 1.4200 1.00 5377 297 0.1069 0.1425 REMARK 3 16 1.4200 - 1.3900 1.00 5312 288 0.1143 0.1543 REMARK 3 17 1.3900 - 1.3600 1.00 5331 282 0.1232 0.1594 REMARK 3 18 1.3600 - 1.3300 1.00 5437 294 0.1303 0.1781 REMARK 3 19 1.3300 - 1.3100 0.99 5419 219 0.1365 0.1795 REMARK 3 20 1.3100 - 1.2900 0.96 5131 262 0.1376 0.1736 REMARK 3 21 1.2900 - 1.2700 0.89 4746 243 0.1521 0.1892 REMARK 3 22 1.2700 - 1.2500 0.79 4286 217 0.1616 0.2181 REMARK 3 23 1.2500 - 1.2300 0.71 3783 223 0.1700 0.2159 REMARK 3 24 1.2300 - 1.2100 0.59 3192 167 0.1750 0.2386 REMARK 3 25 1.2100 - 1.1900 0.48 2630 141 0.1852 0.2311 REMARK 3 26 1.1900 - 1.1800 0.40 2104 112 0.2142 0.2254 REMARK 3 27 1.1800 - 1.1600 0.31 1700 96 0.2136 0.2433 REMARK 3 28 1.1600 - 1.1500 0.24 1271 67 0.2270 0.2462 REMARK 3 29 1.1500 - 1.1400 0.17 894 33 0.2418 0.3109 REMARK 3 30 1.1400 - 1.1200 0.10 526 25 0.2559 0.3332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.084 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.072 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3556 REMARK 3 ANGLE : 1.178 4895 REMARK 3 CHIRALITY : 0.090 562 REMARK 3 PLANARITY : 0.009 636 REMARK 3 DIHEDRAL : 13.087 1269 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : POINTLESS 1.12.2, AIMLESS 0.7.4 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 139276 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.123 REMARK 200 RESOLUTION RANGE LOW (A) : 78.924 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.03 REMARK 200 STARTING MODEL: 4MA3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1% N-OCTYL-BETA-D-GLUCOSIDE, 0.1M REMARK 280 SODIUM CITRATE TRIBASIC DIHYDRATE, 22% PEG 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.72600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.52400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.72600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.52400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 218 REMARK 465 SER H 127 REMARK 465 LYS H 128 REMARK 465 SER H 129 REMARK 465 THR H 130 REMARK 465 SER H 131 REMARK 465 GLY H 132 REMARK 465 CYS H 215 REMARK 465 ASP H 216 REMARK 465 LYS H 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN L 142 O HOH L 401 1.33 REMARK 500 O HOH H 406 O HOH H 445 1.67 REMARK 500 OD1 ASN H 198 O HOH H 401 1.70 REMARK 500 ND2 ASN L 142 O HOH L 401 1.94 REMARK 500 O HOH H 409 O HOH H 653 2.03 REMARK 500 O HOH H 406 O HOH H 704 2.05 REMARK 500 O HOH L 401 O HOH L 638 2.07 REMARK 500 O HOH H 633 O HOH H 678 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 729 O HOH H 717 4556 1.84 REMARK 500 O HOH L 729 O HOH H 693 4556 1.94 REMARK 500 O HOH L 726 O HOH H 709 4556 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 51 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 31 -126.09 58.38 REMARK 500 SER L 31 -134.36 49.55 REMARK 500 ALA L 52 -34.92 71.49 REMARK 500 SER L 53 -3.72 -140.23 REMARK 500 ASN L 142 66.39 63.43 REMARK 500 ASN L 142 76.05 53.00 REMARK 500 LYS H 42 -169.45 -112.47 REMARK 500 THR H 71 -163.90 -102.05 REMARK 500 TYR H 96 -79.05 -137.36 REMARK 500 TYR H 96 -75.37 -138.70 REMARK 500 ASP H 143 64.16 71.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 731 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH H 766 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH H 767 DISTANCE = 6.92 ANGSTROMS DBREF 7D9Z L 1 218 PDB 7D9Z 7D9Z 1 218 DBREF 7D9Z H 1 217 PDB 7D9Z 7D9Z 1 217 SEQRES 1 L 218 ALA ASP VAL VAL MET THR GLN THR PRO SER SER VAL SER SEQRES 2 L 218 ALA ALA VAL GLY GLY THR VAL THR ILE ASN CYS GLN ALA SEQRES 3 L 218 SER GLN SER ILE SER ALA TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 218 LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR ASP ALA SEQRES 5 L 218 SER ASP LEU ALA SER GLY VAL SER SER ARG PHE LYS GLY SEQRES 6 L 218 SER GLY SER GLY THR GLN PHE THR LEU THR ILE SER ASP SEQRES 7 L 218 LEU GLU CYS ALA ASP ALA ALA THR TYR TYR CYS GLN THR SEQRES 8 L 218 TYR TYR ALA ILE ILE THR TYR GLY ALA ALA PHE GLY GLY SEQRES 9 L 218 GLY THR GLU VAL VAL VAL LYS ARG THR VAL ALA ALA PRO SEQRES 10 L 218 SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SEQRES 11 L 218 SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN SEQRES 13 L 218 ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR GLU SEQRES 14 L 218 GLN ASP SER LYS ASP CYS THR TYR SER LEU SER SER THR SEQRES 15 L 218 LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL SEQRES 16 L 218 TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO SEQRES 17 L 218 VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 217 PCA SER VAL GLU GLU SER GLY GLY ARG LEU VAL THR PRO SEQRES 2 H 217 GLY THR PRO LEU THR LEU THR CYS THR VAL SER GLY PHE SEQRES 3 H 217 SER LEU SER ASP TYR ALA MET SER TRP VAL ARG GLN ALA SEQRES 4 H 217 PRO GLY LYS GLY LEU GLU TRP ILE GLY ILE ILE TYR ALA SEQRES 5 H 217 SER GLY SER THR TYR TYR ALA SER TRP ALA LYS GLY ARG SEQRES 6 H 217 PHE THR ILE SER LYS THR SER THR THR VAL ASP LEU LYS SEQRES 7 H 217 ILE THR SER PRO THR THR GLU ASP THR ALA THR TYR PHE SEQRES 8 H 217 CYS ALA ARG TYR TYR ALA GLY SER ASP ILE TRP GLY PRO SEQRES 9 H 217 GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 10 H 217 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 11 H 217 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 12 H 217 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 13 H 217 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 14 H 217 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 15 H 217 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 16 H 217 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 17 H 217 LYS VAL GLU PRO LYS SER CYS ASP LYS HET PCA H 1 14 HET EDO L 301 10 HET EDO H 301 10 HET EDO H 302 10 HET EDO H 303 10 HET EDO H 304 10 HET EDO H 305 10 HET FLC H 306 18 HETNAM PCA PYROGLUTAMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM FLC CITRATE ANION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PCA C5 H7 N O3 FORMUL 3 EDO 6(C2 H6 O2) FORMUL 9 FLC C6 H5 O7 3- FORMUL 10 HOH *698(H2 O) HELIX 1 AA1 GLU L 80 ALA L 84 5 5 HELIX 2 AA2 ALA L 94 GLY L 99 1 6 HELIX 3 AA3 SER L 125 LYS L 130 1 6 HELIX 4 AA4 LYS L 187 GLU L 191 1 5 HELIX 5 AA5 THR H 83 THR H 87 5 5 HELIX 6 AA6 SER H 155 ALA H 157 5 3 HELIX 7 AA7 SER H 186 LEU H 188 5 3 HELIX 8 AA8 LYS H 200 ASN H 203 5 4 SHEET 1 AA1 4 MET L 5 THR L 8 0 SHEET 2 AA1 4 VAL L 20 ALA L 26 -1 O GLN L 25 N THR L 6 SHEET 3 AA1 4 GLN L 71 ILE L 76 -1 O LEU L 74 N ILE L 22 SHEET 4 AA1 4 PHE L 63 SER L 68 -1 N LYS L 64 O THR L 75 SHEET 1 AA2 6 SER L 11 ALA L 15 0 SHEET 2 AA2 6 THR L 106 LYS L 111 1 O LYS L 111 N ALA L 14 SHEET 3 AA2 6 ALA L 85 THR L 91 -1 N TYR L 87 O THR L 106 SHEET 4 AA2 6 LEU L 34 GLN L 39 -1 N TYR L 37 O TYR L 88 SHEET 5 AA2 6 LYS L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AA2 6 ASP L 54 LEU L 55 -1 O ASP L 54 N TYR L 50 SHEET 1 AA3 4 SER L 118 PHE L 122 0 SHEET 2 AA3 4 THR L 133 PHE L 143 -1 O ASN L 141 N SER L 118 SHEET 3 AA3 4 TYR L 177 SER L 186 -1 O LEU L 185 N ALA L 134 SHEET 4 AA3 4 SER L 163 VAL L 167 -1 N SER L 166 O SER L 180 SHEET 1 AA4 4 ALA L 157 LEU L 158 0 SHEET 2 AA4 4 LYS L 149 VAL L 154 -1 N VAL L 154 O ALA L 157 SHEET 3 AA4 4 VAL L 195 THR L 201 -1 O GLU L 199 N GLN L 151 SHEET 4 AA4 4 VAL L 209 ASN L 214 -1 O VAL L 209 N VAL L 200 SHEET 1 AA5 4 SER H 2 SER H 6 0 SHEET 2 AA5 4 LEU H 17 SER H 24 -1 O THR H 22 N GLU H 4 SHEET 3 AA5 4 THR H 74 ILE H 79 -1 O ILE H 79 N LEU H 17 SHEET 4 AA5 4 PHE H 66 LYS H 70 -1 N THR H 67 O LYS H 78 SHEET 1 AA6 6 LEU H 10 VAL H 11 0 SHEET 2 AA6 6 THR H 106 VAL H 110 1 O THR H 109 N VAL H 11 SHEET 3 AA6 6 ALA H 88 TYR H 95 -1 N ALA H 88 O VAL H 108 SHEET 4 AA6 6 ALA H 32 GLN H 38 -1 N VAL H 36 O PHE H 91 SHEET 5 AA6 6 GLU H 45 ILE H 50 -1 O ILE H 47 N TRP H 35 SHEET 6 AA6 6 THR H 56 TYR H 58 -1 O TYR H 57 N ILE H 49 SHEET 1 AA7 4 LEU H 10 VAL H 11 0 SHEET 2 AA7 4 THR H 106 VAL H 110 1 O THR H 109 N VAL H 11 SHEET 3 AA7 4 ALA H 88 TYR H 95 -1 N ALA H 88 O VAL H 108 SHEET 4 AA7 4 SER H 99 TRP H 102 -1 O ILE H 101 N ARG H 94 SHEET 1 AA8 4 SER H 119 LEU H 123 0 SHEET 2 AA8 4 THR H 134 TYR H 144 -1 O LEU H 140 N PHE H 121 SHEET 3 AA8 4 TYR H 175 PRO H 184 -1 O LEU H 177 N VAL H 141 SHEET 4 AA8 4 VAL H 162 THR H 164 -1 N HIS H 163 O VAL H 180 SHEET 1 AA9 4 SER H 119 LEU H 123 0 SHEET 2 AA9 4 THR H 134 TYR H 144 -1 O LEU H 140 N PHE H 121 SHEET 3 AA9 4 TYR H 175 PRO H 184 -1 O LEU H 177 N VAL H 141 SHEET 4 AA9 4 VAL H 168 LEU H 169 -1 N VAL H 168 O SER H 176 SHEET 1 AB1 3 THR H 150 TRP H 153 0 SHEET 2 AB1 3 ILE H 194 HIS H 199 -1 O ASN H 196 N SER H 152 SHEET 3 AB1 3 THR H 204 LYS H 209 -1 O VAL H 206 N VAL H 197 SSBOND 1 CYS L 24 CYS L 89 1555 1555 2.02 SSBOND 2 CYS L 81 CYS L 175 1555 1555 2.07 SSBOND 3 CYS L 138 CYS L 198 1555 1555 2.01 SSBOND 4 CYS H 21 CYS H 92 1555 1555 2.05 SSBOND 5 CYS H 139 CYS H 195 1555 1555 2.04 LINK C PCA H 1 N SER H 2 1555 1555 1.32 CISPEP 1 THR L 8 PRO L 9 0 -10.15 CISPEP 2 TYR L 144 PRO L 145 0 1.04 CISPEP 3 PHE H 145 PRO H 146 0 -11.10 CISPEP 4 GLU H 147 PRO H 148 0 -7.55 CISPEP 5 GLU H 147 PRO H 148 0 6.02 CRYST1 163.452 53.048 54.313 90.00 105.05 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006118 0.000000 0.001645 0.00000 SCALE2 0.000000 0.018851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019065 0.00000