data_7DA4 # _entry.id 7DA4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7DA4 pdb_00007da4 10.2210/pdb7da4/pdb WWPDB D_1300019012 ? ? EMDB EMD-30622 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-04-28 2 'Structure model' 1 1 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7DA4 _pdbx_database_status.recvd_initial_deposition_date 2020-10-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of amyloid fibril formed by human RIPK3' _pdbx_database_related.db_id EMD-30622 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhao, K.' 1 ? 'Ma, Y.Y.' 2 ? 'Sun, Y.P.' 3 ? 'Li, D.' 4 ? 'Liu, C.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 118 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The structure of a minimum amyloid fibril core formed by necroptosis-mediating RHIM of human RIPK3.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2022933118 _citation.pdbx_database_id_PubMed 33790016 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wu, X.' 1 ? primary 'Ma, Y.' 2 ? primary 'Zhao, K.' 3 ? primary 'Zhang, J.' 4 ? primary 'Sun, Y.' 5 0000-0001-6301-3333 primary 'Li, Y.' 6 ? primary 'Dong, X.' 7 ? primary 'Hu, H.' 8 ? primary 'Liu, J.' 9 ? primary 'Wang, J.' 10 0000-0002-6545-3663 primary 'Zhang, X.' 11 ? primary 'Li, B.' 12 ? primary 'Wang, H.' 13 ? primary 'Li, D.' 14 0000-0002-1609-1539 primary 'Sun, B.' 15 0000-0002-4590-7795 primary 'Lu, J.' 16 0000-0002-4270-5821 primary 'Liu, C.' 17 0000-0003-3425-6672 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Receptor-interacting serine/threonine-protein kinase 3' _entity.formula_weight 15311.755 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec 2.7.11.1 _entity.pdbx_mutation ? _entity.pdbx_fragment 'C-terminal domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RIP-like protein kinase 3,Receptor-interacting protein 3,RIP-3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNY LTMQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGKLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNY LTMQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGKLEHHHHHH ; _entity_poly.pdbx_strand_id B,A,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 ASP n 1 6 SER n 1 7 MET n 1 8 ALA n 1 9 GLN n 1 10 PRO n 1 11 PRO n 1 12 GLN n 1 13 THR n 1 14 PRO n 1 15 GLU n 1 16 THR n 1 17 SER n 1 18 THR n 1 19 PHE n 1 20 ARG n 1 21 ASN n 1 22 GLN n 1 23 MET n 1 24 PRO n 1 25 SER n 1 26 PRO n 1 27 THR n 1 28 SER n 1 29 THR n 1 30 GLY n 1 31 THR n 1 32 PRO n 1 33 SER n 1 34 PRO n 1 35 GLY n 1 36 PRO n 1 37 ARG n 1 38 GLY n 1 39 ASN n 1 40 GLN n 1 41 GLY n 1 42 ALA n 1 43 GLU n 1 44 ARG n 1 45 GLN n 1 46 GLY n 1 47 MET n 1 48 ASN n 1 49 TRP n 1 50 SER n 1 51 CYS n 1 52 ARG n 1 53 THR n 1 54 PRO n 1 55 GLU n 1 56 PRO n 1 57 ASN n 1 58 PRO n 1 59 VAL n 1 60 THR n 1 61 GLY n 1 62 ARG n 1 63 PRO n 1 64 LEU n 1 65 VAL n 1 66 ASN n 1 67 ILE n 1 68 TYR n 1 69 ASN n 1 70 CYS n 1 71 SER n 1 72 GLY n 1 73 VAL n 1 74 GLN n 1 75 VAL n 1 76 GLY n 1 77 ASP n 1 78 ASN n 1 79 ASN n 1 80 TYR n 1 81 LEU n 1 82 THR n 1 83 MET n 1 84 GLN n 1 85 GLN n 1 86 THR n 1 87 THR n 1 88 ALA n 1 89 LEU n 1 90 PRO n 1 91 THR n 1 92 TRP n 1 93 GLY n 1 94 LEU n 1 95 ALA n 1 96 PRO n 1 97 SER n 1 98 GLY n 1 99 LYS n 1 100 GLY n 1 101 ARG n 1 102 GLY n 1 103 LEU n 1 104 GLN n 1 105 HIS n 1 106 PRO n 1 107 PRO n 1 108 PRO n 1 109 VAL n 1 110 GLY n 1 111 SER n 1 112 GLN n 1 113 GLU n 1 114 GLY n 1 115 PRO n 1 116 LYS n 1 117 ASP n 1 118 PRO n 1 119 GLU n 1 120 ALA n 1 121 TRP n 1 122 SER n 1 123 ARG n 1 124 PRO n 1 125 GLN n 1 126 GLY n 1 127 TRP n 1 128 TYR n 1 129 ASN n 1 130 HIS n 1 131 SER n 1 132 GLY n 1 133 LYS n 1 134 LEU n 1 135 GLU n 1 136 HIS n 1 137 HIS n 1 138 HIS n 1 139 HIS n 1 140 HIS n 1 141 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 141 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'RIPK3, RIP3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 386 ? ? ? B . n A 1 2 GLY 2 387 ? ? ? B . n A 1 3 SER 3 388 ? ? ? B . n A 1 4 SER 4 389 ? ? ? B . n A 1 5 ASP 5 390 ? ? ? B . n A 1 6 SER 6 391 ? ? ? B . n A 1 7 MET 7 392 ? ? ? B . n A 1 8 ALA 8 393 ? ? ? B . n A 1 9 GLN 9 394 ? ? ? B . n A 1 10 PRO 10 395 ? ? ? B . n A 1 11 PRO 11 396 ? ? ? B . n A 1 12 GLN 12 397 ? ? ? B . n A 1 13 THR 13 398 ? ? ? B . n A 1 14 PRO 14 399 ? ? ? B . n A 1 15 GLU 15 400 ? ? ? B . n A 1 16 THR 16 401 ? ? ? B . n A 1 17 SER 17 402 ? ? ? B . n A 1 18 THR 18 403 ? ? ? B . n A 1 19 PHE 19 404 ? ? ? B . n A 1 20 ARG 20 405 ? ? ? B . n A 1 21 ASN 21 406 ? ? ? B . n A 1 22 GLN 22 407 ? ? ? B . n A 1 23 MET 23 408 ? ? ? B . n A 1 24 PRO 24 409 ? ? ? B . n A 1 25 SER 25 410 ? ? ? B . n A 1 26 PRO 26 411 ? ? ? B . n A 1 27 THR 27 412 ? ? ? B . n A 1 28 SER 28 413 ? ? ? B . n A 1 29 THR 29 414 ? ? ? B . n A 1 30 GLY 30 415 ? ? ? B . n A 1 31 THR 31 416 ? ? ? B . n A 1 32 PRO 32 417 ? ? ? B . n A 1 33 SER 33 418 ? ? ? B . n A 1 34 PRO 34 419 ? ? ? B . n A 1 35 GLY 35 420 ? ? ? B . n A 1 36 PRO 36 421 ? ? ? B . n A 1 37 ARG 37 422 ? ? ? B . n A 1 38 GLY 38 423 ? ? ? B . n A 1 39 ASN 39 424 ? ? ? B . n A 1 40 GLN 40 425 ? ? ? B . n A 1 41 GLY 41 426 ? ? ? B . n A 1 42 ALA 42 427 ? ? ? B . n A 1 43 GLU 43 428 ? ? ? B . n A 1 44 ARG 44 429 ? ? ? B . n A 1 45 GLN 45 430 ? ? ? B . n A 1 46 GLY 46 431 ? ? ? B . n A 1 47 MET 47 432 ? ? ? B . n A 1 48 ASN 48 433 ? ? ? B . n A 1 49 TRP 49 434 ? ? ? B . n A 1 50 SER 50 435 ? ? ? B . n A 1 51 CYS 51 436 ? ? ? B . n A 1 52 ARG 52 437 ? ? ? B . n A 1 53 THR 53 438 ? ? ? B . n A 1 54 PRO 54 439 ? ? ? B . n A 1 55 GLU 55 440 ? ? ? B . n A 1 56 PRO 56 441 ? ? ? B . n A 1 57 ASN 57 442 ? ? ? B . n A 1 58 PRO 58 443 ? ? ? B . n A 1 59 VAL 59 444 ? ? ? B . n A 1 60 THR 60 445 ? ? ? B . n A 1 61 GLY 61 446 ? ? ? B . n A 1 62 ARG 62 447 ? ? ? B . n A 1 63 PRO 63 448 448 PRO PRO B . n A 1 64 LEU 64 449 449 LEU LEU B . n A 1 65 VAL 65 450 450 VAL VAL B . n A 1 66 ASN 66 451 451 ASN ASN B . n A 1 67 ILE 67 452 452 ILE ILE B . n A 1 68 TYR 68 453 453 TYR TYR B . n A 1 69 ASN 69 454 454 ASN ASN B . n A 1 70 CYS 70 455 455 CYS CYS B . n A 1 71 SER 71 456 456 SER SER B . n A 1 72 GLY 72 457 457 GLY GLY B . n A 1 73 VAL 73 458 458 VAL VAL B . n A 1 74 GLN 74 459 459 GLN GLN B . n A 1 75 VAL 75 460 460 VAL VAL B . n A 1 76 GLY 76 461 461 GLY GLY B . n A 1 77 ASP 77 462 462 ASP ASP B . n A 1 78 ASN 78 463 463 ASN ASN B . n A 1 79 ASN 79 464 464 ASN ASN B . n A 1 80 TYR 80 465 465 TYR TYR B . n A 1 81 LEU 81 466 466 LEU LEU B . n A 1 82 THR 82 467 467 THR THR B . n A 1 83 MET 83 468 468 MET MET B . n A 1 84 GLN 84 469 469 GLN GLN B . n A 1 85 GLN 85 470 ? ? ? B . n A 1 86 THR 86 471 ? ? ? B . n A 1 87 THR 87 472 ? ? ? B . n A 1 88 ALA 88 473 ? ? ? B . n A 1 89 LEU 89 474 ? ? ? B . n A 1 90 PRO 90 475 ? ? ? B . n A 1 91 THR 91 476 ? ? ? B . n A 1 92 TRP 92 477 ? ? ? B . n A 1 93 GLY 93 478 ? ? ? B . n A 1 94 LEU 94 479 ? ? ? B . n A 1 95 ALA 95 480 ? ? ? B . n A 1 96 PRO 96 481 ? ? ? B . n A 1 97 SER 97 482 ? ? ? B . n A 1 98 GLY 98 483 ? ? ? B . n A 1 99 LYS 99 484 ? ? ? B . n A 1 100 GLY 100 485 ? ? ? B . n A 1 101 ARG 101 486 ? ? ? B . n A 1 102 GLY 102 487 ? ? ? B . n A 1 103 LEU 103 488 ? ? ? B . n A 1 104 GLN 104 489 ? ? ? B . n A 1 105 HIS 105 490 ? ? ? B . n A 1 106 PRO 106 491 ? ? ? B . n A 1 107 PRO 107 492 ? ? ? B . n A 1 108 PRO 108 493 ? ? ? B . n A 1 109 VAL 109 494 ? ? ? B . n A 1 110 GLY 110 495 ? ? ? B . n A 1 111 SER 111 496 ? ? ? B . n A 1 112 GLN 112 497 ? ? ? B . n A 1 113 GLU 113 498 ? ? ? B . n A 1 114 GLY 114 499 ? ? ? B . n A 1 115 PRO 115 500 ? ? ? B . n A 1 116 LYS 116 501 ? ? ? B . n A 1 117 ASP 117 502 ? ? ? B . n A 1 118 PRO 118 503 ? ? ? B . n A 1 119 GLU 119 504 ? ? ? B . n A 1 120 ALA 120 505 ? ? ? B . n A 1 121 TRP 121 506 ? ? ? B . n A 1 122 SER 122 507 ? ? ? B . n A 1 123 ARG 123 508 ? ? ? B . n A 1 124 PRO 124 509 ? ? ? B . n A 1 125 GLN 125 510 ? ? ? B . n A 1 126 GLY 126 511 ? ? ? B . n A 1 127 TRP 127 512 ? ? ? B . n A 1 128 TYR 128 513 ? ? ? B . n A 1 129 ASN 129 514 ? ? ? B . n A 1 130 HIS 130 515 ? ? ? B . n A 1 131 SER 131 516 ? ? ? B . n A 1 132 GLY 132 517 ? ? ? B . n A 1 133 LYS 133 518 ? ? ? B . n A 1 134 LEU 134 519 ? ? ? B . n A 1 135 GLU 135 520 ? ? ? B . n A 1 136 HIS 136 521 ? ? ? B . n A 1 137 HIS 137 522 ? ? ? B . n A 1 138 HIS 138 523 ? ? ? B . n A 1 139 HIS 139 524 ? ? ? B . n A 1 140 HIS 140 525 ? ? ? B . n A 1 141 HIS 141 526 ? ? ? B . n B 1 1 MET 1 386 ? ? ? A . n B 1 2 GLY 2 387 ? ? ? A . n B 1 3 SER 3 388 ? ? ? A . n B 1 4 SER 4 389 ? ? ? A . n B 1 5 ASP 5 390 ? ? ? A . n B 1 6 SER 6 391 ? ? ? A . n B 1 7 MET 7 392 ? ? ? A . n B 1 8 ALA 8 393 ? ? ? A . n B 1 9 GLN 9 394 ? ? ? A . n B 1 10 PRO 10 395 ? ? ? A . n B 1 11 PRO 11 396 ? ? ? A . n B 1 12 GLN 12 397 ? ? ? A . n B 1 13 THR 13 398 ? ? ? A . n B 1 14 PRO 14 399 ? ? ? A . n B 1 15 GLU 15 400 ? ? ? A . n B 1 16 THR 16 401 ? ? ? A . n B 1 17 SER 17 402 ? ? ? A . n B 1 18 THR 18 403 ? ? ? A . n B 1 19 PHE 19 404 ? ? ? A . n B 1 20 ARG 20 405 ? ? ? A . n B 1 21 ASN 21 406 ? ? ? A . n B 1 22 GLN 22 407 ? ? ? A . n B 1 23 MET 23 408 ? ? ? A . n B 1 24 PRO 24 409 ? ? ? A . n B 1 25 SER 25 410 ? ? ? A . n B 1 26 PRO 26 411 ? ? ? A . n B 1 27 THR 27 412 ? ? ? A . n B 1 28 SER 28 413 ? ? ? A . n B 1 29 THR 29 414 ? ? ? A . n B 1 30 GLY 30 415 ? ? ? A . n B 1 31 THR 31 416 ? ? ? A . n B 1 32 PRO 32 417 ? ? ? A . n B 1 33 SER 33 418 ? ? ? A . n B 1 34 PRO 34 419 ? ? ? A . n B 1 35 GLY 35 420 ? ? ? A . n B 1 36 PRO 36 421 ? ? ? A . n B 1 37 ARG 37 422 ? ? ? A . n B 1 38 GLY 38 423 ? ? ? A . n B 1 39 ASN 39 424 ? ? ? A . n B 1 40 GLN 40 425 ? ? ? A . n B 1 41 GLY 41 426 ? ? ? A . n B 1 42 ALA 42 427 ? ? ? A . n B 1 43 GLU 43 428 ? ? ? A . n B 1 44 ARG 44 429 ? ? ? A . n B 1 45 GLN 45 430 ? ? ? A . n B 1 46 GLY 46 431 ? ? ? A . n B 1 47 MET 47 432 ? ? ? A . n B 1 48 ASN 48 433 ? ? ? A . n B 1 49 TRP 49 434 ? ? ? A . n B 1 50 SER 50 435 ? ? ? A . n B 1 51 CYS 51 436 ? ? ? A . n B 1 52 ARG 52 437 ? ? ? A . n B 1 53 THR 53 438 ? ? ? A . n B 1 54 PRO 54 439 ? ? ? A . n B 1 55 GLU 55 440 ? ? ? A . n B 1 56 PRO 56 441 ? ? ? A . n B 1 57 ASN 57 442 ? ? ? A . n B 1 58 PRO 58 443 ? ? ? A . n B 1 59 VAL 59 444 ? ? ? A . n B 1 60 THR 60 445 ? ? ? A . n B 1 61 GLY 61 446 ? ? ? A . n B 1 62 ARG 62 447 ? ? ? A . n B 1 63 PRO 63 448 448 PRO PRO A . n B 1 64 LEU 64 449 449 LEU LEU A . n B 1 65 VAL 65 450 450 VAL VAL A . n B 1 66 ASN 66 451 451 ASN ASN A . n B 1 67 ILE 67 452 452 ILE ILE A . n B 1 68 TYR 68 453 453 TYR TYR A . n B 1 69 ASN 69 454 454 ASN ASN A . n B 1 70 CYS 70 455 455 CYS CYS A . n B 1 71 SER 71 456 456 SER SER A . n B 1 72 GLY 72 457 457 GLY GLY A . n B 1 73 VAL 73 458 458 VAL VAL A . n B 1 74 GLN 74 459 459 GLN GLN A . n B 1 75 VAL 75 460 460 VAL VAL A . n B 1 76 GLY 76 461 461 GLY GLY A . n B 1 77 ASP 77 462 462 ASP ASP A . n B 1 78 ASN 78 463 463 ASN ASN A . n B 1 79 ASN 79 464 464 ASN ASN A . n B 1 80 TYR 80 465 465 TYR TYR A . n B 1 81 LEU 81 466 466 LEU LEU A . n B 1 82 THR 82 467 467 THR THR A . n B 1 83 MET 83 468 468 MET MET A . n B 1 84 GLN 84 469 469 GLN GLN A . n B 1 85 GLN 85 470 ? ? ? A . n B 1 86 THR 86 471 ? ? ? A . n B 1 87 THR 87 472 ? ? ? A . n B 1 88 ALA 88 473 ? ? ? A . n B 1 89 LEU 89 474 ? ? ? A . n B 1 90 PRO 90 475 ? ? ? A . n B 1 91 THR 91 476 ? ? ? A . n B 1 92 TRP 92 477 ? ? ? A . n B 1 93 GLY 93 478 ? ? ? A . n B 1 94 LEU 94 479 ? ? ? A . n B 1 95 ALA 95 480 ? ? ? A . n B 1 96 PRO 96 481 ? ? ? A . n B 1 97 SER 97 482 ? ? ? A . n B 1 98 GLY 98 483 ? ? ? A . n B 1 99 LYS 99 484 ? ? ? A . n B 1 100 GLY 100 485 ? ? ? A . n B 1 101 ARG 101 486 ? ? ? A . n B 1 102 GLY 102 487 ? ? ? A . n B 1 103 LEU 103 488 ? ? ? A . n B 1 104 GLN 104 489 ? ? ? A . n B 1 105 HIS 105 490 ? ? ? A . n B 1 106 PRO 106 491 ? ? ? A . n B 1 107 PRO 107 492 ? ? ? A . n B 1 108 PRO 108 493 ? ? ? A . n B 1 109 VAL 109 494 ? ? ? A . n B 1 110 GLY 110 495 ? ? ? A . n B 1 111 SER 111 496 ? ? ? A . n B 1 112 GLN 112 497 ? ? ? A . n B 1 113 GLU 113 498 ? ? ? A . n B 1 114 GLY 114 499 ? ? ? A . n B 1 115 PRO 115 500 ? ? ? A . n B 1 116 LYS 116 501 ? ? ? A . n B 1 117 ASP 117 502 ? ? ? A . n B 1 118 PRO 118 503 ? ? ? A . n B 1 119 GLU 119 504 ? ? ? A . n B 1 120 ALA 120 505 ? ? ? A . n B 1 121 TRP 121 506 ? ? ? A . n B 1 122 SER 122 507 ? ? ? A . n B 1 123 ARG 123 508 ? ? ? A . n B 1 124 PRO 124 509 ? ? ? A . n B 1 125 GLN 125 510 ? ? ? A . n B 1 126 GLY 126 511 ? ? ? A . n B 1 127 TRP 127 512 ? ? ? A . n B 1 128 TYR 128 513 ? ? ? A . n B 1 129 ASN 129 514 ? ? ? A . n B 1 130 HIS 130 515 ? ? ? A . n B 1 131 SER 131 516 ? ? ? A . n B 1 132 GLY 132 517 ? ? ? A . n B 1 133 LYS 133 518 ? ? ? A . n B 1 134 LEU 134 519 ? ? ? A . n B 1 135 GLU 135 520 ? ? ? A . n B 1 136 HIS 136 521 ? ? ? A . n B 1 137 HIS 137 522 ? ? ? A . n B 1 138 HIS 138 523 ? ? ? A . n B 1 139 HIS 139 524 ? ? ? A . n B 1 140 HIS 140 525 ? ? ? A . n B 1 141 HIS 141 526 ? ? ? A . n C 1 1 MET 1 386 ? ? ? C . n C 1 2 GLY 2 387 ? ? ? C . n C 1 3 SER 3 388 ? ? ? C . n C 1 4 SER 4 389 ? ? ? C . n C 1 5 ASP 5 390 ? ? ? C . n C 1 6 SER 6 391 ? ? ? C . n C 1 7 MET 7 392 ? ? ? C . n C 1 8 ALA 8 393 ? ? ? C . n C 1 9 GLN 9 394 ? ? ? C . n C 1 10 PRO 10 395 ? ? ? C . n C 1 11 PRO 11 396 ? ? ? C . n C 1 12 GLN 12 397 ? ? ? C . n C 1 13 THR 13 398 ? ? ? C . n C 1 14 PRO 14 399 ? ? ? C . n C 1 15 GLU 15 400 ? ? ? C . n C 1 16 THR 16 401 ? ? ? C . n C 1 17 SER 17 402 ? ? ? C . n C 1 18 THR 18 403 ? ? ? C . n C 1 19 PHE 19 404 ? ? ? C . n C 1 20 ARG 20 405 ? ? ? C . n C 1 21 ASN 21 406 ? ? ? C . n C 1 22 GLN 22 407 ? ? ? C . n C 1 23 MET 23 408 ? ? ? C . n C 1 24 PRO 24 409 ? ? ? C . n C 1 25 SER 25 410 ? ? ? C . n C 1 26 PRO 26 411 ? ? ? C . n C 1 27 THR 27 412 ? ? ? C . n C 1 28 SER 28 413 ? ? ? C . n C 1 29 THR 29 414 ? ? ? C . n C 1 30 GLY 30 415 ? ? ? C . n C 1 31 THR 31 416 ? ? ? C . n C 1 32 PRO 32 417 ? ? ? C . n C 1 33 SER 33 418 ? ? ? C . n C 1 34 PRO 34 419 ? ? ? C . n C 1 35 GLY 35 420 ? ? ? C . n C 1 36 PRO 36 421 ? ? ? C . n C 1 37 ARG 37 422 ? ? ? C . n C 1 38 GLY 38 423 ? ? ? C . n C 1 39 ASN 39 424 ? ? ? C . n C 1 40 GLN 40 425 ? ? ? C . n C 1 41 GLY 41 426 ? ? ? C . n C 1 42 ALA 42 427 ? ? ? C . n C 1 43 GLU 43 428 ? ? ? C . n C 1 44 ARG 44 429 ? ? ? C . n C 1 45 GLN 45 430 ? ? ? C . n C 1 46 GLY 46 431 ? ? ? C . n C 1 47 MET 47 432 ? ? ? C . n C 1 48 ASN 48 433 ? ? ? C . n C 1 49 TRP 49 434 ? ? ? C . n C 1 50 SER 50 435 ? ? ? C . n C 1 51 CYS 51 436 ? ? ? C . n C 1 52 ARG 52 437 ? ? ? C . n C 1 53 THR 53 438 ? ? ? C . n C 1 54 PRO 54 439 ? ? ? C . n C 1 55 GLU 55 440 ? ? ? C . n C 1 56 PRO 56 441 ? ? ? C . n C 1 57 ASN 57 442 ? ? ? C . n C 1 58 PRO 58 443 ? ? ? C . n C 1 59 VAL 59 444 ? ? ? C . n C 1 60 THR 60 445 ? ? ? C . n C 1 61 GLY 61 446 ? ? ? C . n C 1 62 ARG 62 447 ? ? ? C . n C 1 63 PRO 63 448 448 PRO PRO C . n C 1 64 LEU 64 449 449 LEU LEU C . n C 1 65 VAL 65 450 450 VAL VAL C . n C 1 66 ASN 66 451 451 ASN ASN C . n C 1 67 ILE 67 452 452 ILE ILE C . n C 1 68 TYR 68 453 453 TYR TYR C . n C 1 69 ASN 69 454 454 ASN ASN C . n C 1 70 CYS 70 455 455 CYS CYS C . n C 1 71 SER 71 456 456 SER SER C . n C 1 72 GLY 72 457 457 GLY GLY C . n C 1 73 VAL 73 458 458 VAL VAL C . n C 1 74 GLN 74 459 459 GLN GLN C . n C 1 75 VAL 75 460 460 VAL VAL C . n C 1 76 GLY 76 461 461 GLY GLY C . n C 1 77 ASP 77 462 462 ASP ASP C . n C 1 78 ASN 78 463 463 ASN ASN C . n C 1 79 ASN 79 464 464 ASN ASN C . n C 1 80 TYR 80 465 465 TYR TYR C . n C 1 81 LEU 81 466 466 LEU LEU C . n C 1 82 THR 82 467 467 THR THR C . n C 1 83 MET 83 468 468 MET MET C . n C 1 84 GLN 84 469 469 GLN GLN C . n C 1 85 GLN 85 470 ? ? ? C . n C 1 86 THR 86 471 ? ? ? C . n C 1 87 THR 87 472 ? ? ? C . n C 1 88 ALA 88 473 ? ? ? C . n C 1 89 LEU 89 474 ? ? ? C . n C 1 90 PRO 90 475 ? ? ? C . n C 1 91 THR 91 476 ? ? ? C . n C 1 92 TRP 92 477 ? ? ? C . n C 1 93 GLY 93 478 ? ? ? C . n C 1 94 LEU 94 479 ? ? ? C . n C 1 95 ALA 95 480 ? ? ? C . n C 1 96 PRO 96 481 ? ? ? C . n C 1 97 SER 97 482 ? ? ? C . n C 1 98 GLY 98 483 ? ? ? C . n C 1 99 LYS 99 484 ? ? ? C . n C 1 100 GLY 100 485 ? ? ? C . n C 1 101 ARG 101 486 ? ? ? C . n C 1 102 GLY 102 487 ? ? ? C . n C 1 103 LEU 103 488 ? ? ? C . n C 1 104 GLN 104 489 ? ? ? C . n C 1 105 HIS 105 490 ? ? ? C . n C 1 106 PRO 106 491 ? ? ? C . n C 1 107 PRO 107 492 ? ? ? C . n C 1 108 PRO 108 493 ? ? ? C . n C 1 109 VAL 109 494 ? ? ? C . n C 1 110 GLY 110 495 ? ? ? C . n C 1 111 SER 111 496 ? ? ? C . n C 1 112 GLN 112 497 ? ? ? C . n C 1 113 GLU 113 498 ? ? ? C . n C 1 114 GLY 114 499 ? ? ? C . n C 1 115 PRO 115 500 ? ? ? C . n C 1 116 LYS 116 501 ? ? ? C . n C 1 117 ASP 117 502 ? ? ? C . n C 1 118 PRO 118 503 ? ? ? C . n C 1 119 GLU 119 504 ? ? ? C . n C 1 120 ALA 120 505 ? ? ? C . n C 1 121 TRP 121 506 ? ? ? C . n C 1 122 SER 122 507 ? ? ? C . n C 1 123 ARG 123 508 ? ? ? C . n C 1 124 PRO 124 509 ? ? ? C . n C 1 125 GLN 125 510 ? ? ? C . n C 1 126 GLY 126 511 ? ? ? C . n C 1 127 TRP 127 512 ? ? ? C . n C 1 128 TYR 128 513 ? ? ? C . n C 1 129 ASN 129 514 ? ? ? C . n C 1 130 HIS 130 515 ? ? ? C . n C 1 131 SER 131 516 ? ? ? C . n C 1 132 GLY 132 517 ? ? ? C . n C 1 133 LYS 133 518 ? ? ? C . n C 1 134 LEU 134 519 ? ? ? C . n C 1 135 GLU 135 520 ? ? ? C . n C 1 136 HIS 136 521 ? ? ? C . n C 1 137 HIS 137 522 ? ? ? C . n C 1 138 HIS 138 523 ? ? ? C . n C 1 139 HIS 139 524 ? ? ? C . n C 1 140 HIS 140 525 ? ? ? C . n C 1 141 HIS 141 526 ? ? ? C . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7DA4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7DA4 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7DA4 _struct.title 'Cryo-EM structure of amyloid fibril formed by human RIPK3' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7DA4 _struct_keywords.text 'Amyloid fibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RIPK3_HUMAN _struct_ref.pdbx_db_accession Q9Y572 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLT MQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK ; _struct_ref.pdbx_align_begin 388 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7DA4 B 3 ? 133 ? Q9Y572 388 ? 518 ? 388 518 2 1 7DA4 A 3 ? 133 ? Q9Y572 388 ? 518 ? 388 518 3 1 7DA4 C 3 ? 133 ? Q9Y572 388 ? 518 ? 388 518 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7DA4 MET B 1 ? UNP Q9Y572 ? ? 'expression tag' 386 1 1 7DA4 GLY B 2 ? UNP Q9Y572 ? ? 'expression tag' 387 2 1 7DA4 LEU B 134 ? UNP Q9Y572 ? ? 'expression tag' 519 3 1 7DA4 GLU B 135 ? UNP Q9Y572 ? ? 'expression tag' 520 4 1 7DA4 HIS B 136 ? UNP Q9Y572 ? ? 'expression tag' 521 5 1 7DA4 HIS B 137 ? UNP Q9Y572 ? ? 'expression tag' 522 6 1 7DA4 HIS B 138 ? UNP Q9Y572 ? ? 'expression tag' 523 7 1 7DA4 HIS B 139 ? UNP Q9Y572 ? ? 'expression tag' 524 8 1 7DA4 HIS B 140 ? UNP Q9Y572 ? ? 'expression tag' 525 9 1 7DA4 HIS B 141 ? UNP Q9Y572 ? ? 'expression tag' 526 10 2 7DA4 MET A 1 ? UNP Q9Y572 ? ? 'expression tag' 386 11 2 7DA4 GLY A 2 ? UNP Q9Y572 ? ? 'expression tag' 387 12 2 7DA4 LEU A 134 ? UNP Q9Y572 ? ? 'expression tag' 519 13 2 7DA4 GLU A 135 ? UNP Q9Y572 ? ? 'expression tag' 520 14 2 7DA4 HIS A 136 ? UNP Q9Y572 ? ? 'expression tag' 521 15 2 7DA4 HIS A 137 ? UNP Q9Y572 ? ? 'expression tag' 522 16 2 7DA4 HIS A 138 ? UNP Q9Y572 ? ? 'expression tag' 523 17 2 7DA4 HIS A 139 ? UNP Q9Y572 ? ? 'expression tag' 524 18 2 7DA4 HIS A 140 ? UNP Q9Y572 ? ? 'expression tag' 525 19 2 7DA4 HIS A 141 ? UNP Q9Y572 ? ? 'expression tag' 526 20 3 7DA4 MET C 1 ? UNP Q9Y572 ? ? 'expression tag' 386 21 3 7DA4 GLY C 2 ? UNP Q9Y572 ? ? 'expression tag' 387 22 3 7DA4 LEU C 134 ? UNP Q9Y572 ? ? 'expression tag' 519 23 3 7DA4 GLU C 135 ? UNP Q9Y572 ? ? 'expression tag' 520 24 3 7DA4 HIS C 136 ? UNP Q9Y572 ? ? 'expression tag' 521 25 3 7DA4 HIS C 137 ? UNP Q9Y572 ? ? 'expression tag' 522 26 3 7DA4 HIS C 138 ? UNP Q9Y572 ? ? 'expression tag' 523 27 3 7DA4 HIS C 139 ? UNP Q9Y572 ? ? 'expression tag' 524 28 3 7DA4 HIS C 140 ? UNP Q9Y572 ? ? 'expression tag' 525 29 3 7DA4 HIS C 141 ? UNP Q9Y572 ? ? 'expression tag' 526 30 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3640 ? 1 MORE -26 ? 1 'SSA (A^2)' 3820 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL B 450 ? ? -125.11 -55.25 2 1 ASN B 454 ? ? -79.47 -167.07 3 1 CYS B 455 ? ? -143.49 30.84 4 1 ASP B 462 ? ? -171.78 -166.33 5 1 ASN B 464 ? ? 59.74 81.69 6 1 TYR B 465 ? ? -52.62 109.94 7 1 VAL A 450 ? ? -125.05 -55.35 8 1 ASN A 454 ? ? -79.44 -167.13 9 1 CYS A 455 ? ? -143.43 30.88 10 1 ASP A 462 ? ? -171.77 -166.28 11 1 ASN A 464 ? ? 59.78 81.64 12 1 TYR A 465 ? ? -52.61 109.97 13 1 VAL C 450 ? ? -125.11 -55.24 14 1 ASN C 454 ? ? -79.48 -167.13 15 1 CYS C 455 ? ? -143.48 30.89 16 1 ASP C 462 ? ? -171.80 -166.31 17 1 ASN C 464 ? ? 59.75 81.64 18 1 TYR C 465 ? ? -52.58 109.95 # _em_3d_fitting.entry_id 7DA4 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7DA4 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 45526 _em_3d_reconstruction.resolution 4.24 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 5.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'human RIPK3-CTD amyloid fibril' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7DA4 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7DA4 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7DA4 _em_experiment.id 1 _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET 386 ? A MET 1 2 1 Y 1 B GLY 387 ? A GLY 2 3 1 Y 1 B SER 388 ? A SER 3 4 1 Y 1 B SER 389 ? A SER 4 5 1 Y 1 B ASP 390 ? A ASP 5 6 1 Y 1 B SER 391 ? A SER 6 7 1 Y 1 B MET 392 ? A MET 7 8 1 Y 1 B ALA 393 ? A ALA 8 9 1 Y 1 B GLN 394 ? A GLN 9 10 1 Y 1 B PRO 395 ? A PRO 10 11 1 Y 1 B PRO 396 ? A PRO 11 12 1 Y 1 B GLN 397 ? A GLN 12 13 1 Y 1 B THR 398 ? A THR 13 14 1 Y 1 B PRO 399 ? A PRO 14 15 1 Y 1 B GLU 400 ? A GLU 15 16 1 Y 1 B THR 401 ? A THR 16 17 1 Y 1 B SER 402 ? A SER 17 18 1 Y 1 B THR 403 ? A THR 18 19 1 Y 1 B PHE 404 ? A PHE 19 20 1 Y 1 B ARG 405 ? A ARG 20 21 1 Y 1 B ASN 406 ? A ASN 21 22 1 Y 1 B GLN 407 ? A GLN 22 23 1 Y 1 B MET 408 ? A MET 23 24 1 Y 1 B PRO 409 ? A PRO 24 25 1 Y 1 B SER 410 ? A SER 25 26 1 Y 1 B PRO 411 ? A PRO 26 27 1 Y 1 B THR 412 ? A THR 27 28 1 Y 1 B SER 413 ? A SER 28 29 1 Y 1 B THR 414 ? A THR 29 30 1 Y 1 B GLY 415 ? A GLY 30 31 1 Y 1 B THR 416 ? A THR 31 32 1 Y 1 B PRO 417 ? A PRO 32 33 1 Y 1 B SER 418 ? A SER 33 34 1 Y 1 B PRO 419 ? A PRO 34 35 1 Y 1 B GLY 420 ? A GLY 35 36 1 Y 1 B PRO 421 ? A PRO 36 37 1 Y 1 B ARG 422 ? A ARG 37 38 1 Y 1 B GLY 423 ? A GLY 38 39 1 Y 1 B ASN 424 ? A ASN 39 40 1 Y 1 B GLN 425 ? A GLN 40 41 1 Y 1 B GLY 426 ? A GLY 41 42 1 Y 1 B ALA 427 ? A ALA 42 43 1 Y 1 B GLU 428 ? A GLU 43 44 1 Y 1 B ARG 429 ? A ARG 44 45 1 Y 1 B GLN 430 ? A GLN 45 46 1 Y 1 B GLY 431 ? A GLY 46 47 1 Y 1 B MET 432 ? A MET 47 48 1 Y 1 B ASN 433 ? A ASN 48 49 1 Y 1 B TRP 434 ? A TRP 49 50 1 Y 1 B SER 435 ? A SER 50 51 1 Y 1 B CYS 436 ? A CYS 51 52 1 Y 1 B ARG 437 ? A ARG 52 53 1 Y 1 B THR 438 ? A THR 53 54 1 Y 1 B PRO 439 ? A PRO 54 55 1 Y 1 B GLU 440 ? A GLU 55 56 1 Y 1 B PRO 441 ? A PRO 56 57 1 Y 1 B ASN 442 ? A ASN 57 58 1 Y 1 B PRO 443 ? A PRO 58 59 1 Y 1 B VAL 444 ? A VAL 59 60 1 Y 1 B THR 445 ? A THR 60 61 1 Y 1 B GLY 446 ? A GLY 61 62 1 Y 1 B ARG 447 ? A ARG 62 63 1 Y 1 B GLN 470 ? A GLN 85 64 1 Y 1 B THR 471 ? A THR 86 65 1 Y 1 B THR 472 ? A THR 87 66 1 Y 1 B ALA 473 ? A ALA 88 67 1 Y 1 B LEU 474 ? A LEU 89 68 1 Y 1 B PRO 475 ? A PRO 90 69 1 Y 1 B THR 476 ? A THR 91 70 1 Y 1 B TRP 477 ? A TRP 92 71 1 Y 1 B GLY 478 ? A GLY 93 72 1 Y 1 B LEU 479 ? A LEU 94 73 1 Y 1 B ALA 480 ? A ALA 95 74 1 Y 1 B PRO 481 ? A PRO 96 75 1 Y 1 B SER 482 ? A SER 97 76 1 Y 1 B GLY 483 ? A GLY 98 77 1 Y 1 B LYS 484 ? A LYS 99 78 1 Y 1 B GLY 485 ? A GLY 100 79 1 Y 1 B ARG 486 ? A ARG 101 80 1 Y 1 B GLY 487 ? A GLY 102 81 1 Y 1 B LEU 488 ? A LEU 103 82 1 Y 1 B GLN 489 ? A GLN 104 83 1 Y 1 B HIS 490 ? A HIS 105 84 1 Y 1 B PRO 491 ? A PRO 106 85 1 Y 1 B PRO 492 ? A PRO 107 86 1 Y 1 B PRO 493 ? A PRO 108 87 1 Y 1 B VAL 494 ? A VAL 109 88 1 Y 1 B GLY 495 ? A GLY 110 89 1 Y 1 B SER 496 ? A SER 111 90 1 Y 1 B GLN 497 ? A GLN 112 91 1 Y 1 B GLU 498 ? A GLU 113 92 1 Y 1 B GLY 499 ? A GLY 114 93 1 Y 1 B PRO 500 ? A PRO 115 94 1 Y 1 B LYS 501 ? A LYS 116 95 1 Y 1 B ASP 502 ? A ASP 117 96 1 Y 1 B PRO 503 ? A PRO 118 97 1 Y 1 B GLU 504 ? A GLU 119 98 1 Y 1 B ALA 505 ? A ALA 120 99 1 Y 1 B TRP 506 ? A TRP 121 100 1 Y 1 B SER 507 ? A SER 122 101 1 Y 1 B ARG 508 ? A ARG 123 102 1 Y 1 B PRO 509 ? A PRO 124 103 1 Y 1 B GLN 510 ? A GLN 125 104 1 Y 1 B GLY 511 ? A GLY 126 105 1 Y 1 B TRP 512 ? A TRP 127 106 1 Y 1 B TYR 513 ? A TYR 128 107 1 Y 1 B ASN 514 ? A ASN 129 108 1 Y 1 B HIS 515 ? A HIS 130 109 1 Y 1 B SER 516 ? A SER 131 110 1 Y 1 B GLY 517 ? A GLY 132 111 1 Y 1 B LYS 518 ? A LYS 133 112 1 Y 1 B LEU 519 ? A LEU 134 113 1 Y 1 B GLU 520 ? A GLU 135 114 1 Y 1 B HIS 521 ? A HIS 136 115 1 Y 1 B HIS 522 ? A HIS 137 116 1 Y 1 B HIS 523 ? A HIS 138 117 1 Y 1 B HIS 524 ? A HIS 139 118 1 Y 1 B HIS 525 ? A HIS 140 119 1 Y 1 B HIS 526 ? A HIS 141 120 1 Y 1 A MET 386 ? B MET 1 121 1 Y 1 A GLY 387 ? B GLY 2 122 1 Y 1 A SER 388 ? B SER 3 123 1 Y 1 A SER 389 ? B SER 4 124 1 Y 1 A ASP 390 ? B ASP 5 125 1 Y 1 A SER 391 ? B SER 6 126 1 Y 1 A MET 392 ? B MET 7 127 1 Y 1 A ALA 393 ? B ALA 8 128 1 Y 1 A GLN 394 ? B GLN 9 129 1 Y 1 A PRO 395 ? B PRO 10 130 1 Y 1 A PRO 396 ? B PRO 11 131 1 Y 1 A GLN 397 ? B GLN 12 132 1 Y 1 A THR 398 ? B THR 13 133 1 Y 1 A PRO 399 ? B PRO 14 134 1 Y 1 A GLU 400 ? B GLU 15 135 1 Y 1 A THR 401 ? B THR 16 136 1 Y 1 A SER 402 ? B SER 17 137 1 Y 1 A THR 403 ? B THR 18 138 1 Y 1 A PHE 404 ? B PHE 19 139 1 Y 1 A ARG 405 ? B ARG 20 140 1 Y 1 A ASN 406 ? B ASN 21 141 1 Y 1 A GLN 407 ? B GLN 22 142 1 Y 1 A MET 408 ? B MET 23 143 1 Y 1 A PRO 409 ? B PRO 24 144 1 Y 1 A SER 410 ? B SER 25 145 1 Y 1 A PRO 411 ? B PRO 26 146 1 Y 1 A THR 412 ? B THR 27 147 1 Y 1 A SER 413 ? B SER 28 148 1 Y 1 A THR 414 ? B THR 29 149 1 Y 1 A GLY 415 ? B GLY 30 150 1 Y 1 A THR 416 ? B THR 31 151 1 Y 1 A PRO 417 ? B PRO 32 152 1 Y 1 A SER 418 ? B SER 33 153 1 Y 1 A PRO 419 ? B PRO 34 154 1 Y 1 A GLY 420 ? B GLY 35 155 1 Y 1 A PRO 421 ? B PRO 36 156 1 Y 1 A ARG 422 ? B ARG 37 157 1 Y 1 A GLY 423 ? B GLY 38 158 1 Y 1 A ASN 424 ? B ASN 39 159 1 Y 1 A GLN 425 ? B GLN 40 160 1 Y 1 A GLY 426 ? B GLY 41 161 1 Y 1 A ALA 427 ? B ALA 42 162 1 Y 1 A GLU 428 ? B GLU 43 163 1 Y 1 A ARG 429 ? B ARG 44 164 1 Y 1 A GLN 430 ? B GLN 45 165 1 Y 1 A GLY 431 ? B GLY 46 166 1 Y 1 A MET 432 ? B MET 47 167 1 Y 1 A ASN 433 ? B ASN 48 168 1 Y 1 A TRP 434 ? B TRP 49 169 1 Y 1 A SER 435 ? B SER 50 170 1 Y 1 A CYS 436 ? B CYS 51 171 1 Y 1 A ARG 437 ? B ARG 52 172 1 Y 1 A THR 438 ? B THR 53 173 1 Y 1 A PRO 439 ? B PRO 54 174 1 Y 1 A GLU 440 ? B GLU 55 175 1 Y 1 A PRO 441 ? B PRO 56 176 1 Y 1 A ASN 442 ? B ASN 57 177 1 Y 1 A PRO 443 ? B PRO 58 178 1 Y 1 A VAL 444 ? B VAL 59 179 1 Y 1 A THR 445 ? B THR 60 180 1 Y 1 A GLY 446 ? B GLY 61 181 1 Y 1 A ARG 447 ? B ARG 62 182 1 Y 1 A GLN 470 ? B GLN 85 183 1 Y 1 A THR 471 ? B THR 86 184 1 Y 1 A THR 472 ? B THR 87 185 1 Y 1 A ALA 473 ? B ALA 88 186 1 Y 1 A LEU 474 ? B LEU 89 187 1 Y 1 A PRO 475 ? B PRO 90 188 1 Y 1 A THR 476 ? B THR 91 189 1 Y 1 A TRP 477 ? B TRP 92 190 1 Y 1 A GLY 478 ? B GLY 93 191 1 Y 1 A LEU 479 ? B LEU 94 192 1 Y 1 A ALA 480 ? B ALA 95 193 1 Y 1 A PRO 481 ? B PRO 96 194 1 Y 1 A SER 482 ? B SER 97 195 1 Y 1 A GLY 483 ? B GLY 98 196 1 Y 1 A LYS 484 ? B LYS 99 197 1 Y 1 A GLY 485 ? B GLY 100 198 1 Y 1 A ARG 486 ? B ARG 101 199 1 Y 1 A GLY 487 ? B GLY 102 200 1 Y 1 A LEU 488 ? B LEU 103 201 1 Y 1 A GLN 489 ? B GLN 104 202 1 Y 1 A HIS 490 ? B HIS 105 203 1 Y 1 A PRO 491 ? B PRO 106 204 1 Y 1 A PRO 492 ? B PRO 107 205 1 Y 1 A PRO 493 ? B PRO 108 206 1 Y 1 A VAL 494 ? B VAL 109 207 1 Y 1 A GLY 495 ? B GLY 110 208 1 Y 1 A SER 496 ? B SER 111 209 1 Y 1 A GLN 497 ? B GLN 112 210 1 Y 1 A GLU 498 ? B GLU 113 211 1 Y 1 A GLY 499 ? B GLY 114 212 1 Y 1 A PRO 500 ? B PRO 115 213 1 Y 1 A LYS 501 ? B LYS 116 214 1 Y 1 A ASP 502 ? B ASP 117 215 1 Y 1 A PRO 503 ? B PRO 118 216 1 Y 1 A GLU 504 ? B GLU 119 217 1 Y 1 A ALA 505 ? B ALA 120 218 1 Y 1 A TRP 506 ? B TRP 121 219 1 Y 1 A SER 507 ? B SER 122 220 1 Y 1 A ARG 508 ? B ARG 123 221 1 Y 1 A PRO 509 ? B PRO 124 222 1 Y 1 A GLN 510 ? B GLN 125 223 1 Y 1 A GLY 511 ? B GLY 126 224 1 Y 1 A TRP 512 ? B TRP 127 225 1 Y 1 A TYR 513 ? B TYR 128 226 1 Y 1 A ASN 514 ? B ASN 129 227 1 Y 1 A HIS 515 ? B HIS 130 228 1 Y 1 A SER 516 ? B SER 131 229 1 Y 1 A GLY 517 ? B GLY 132 230 1 Y 1 A LYS 518 ? B LYS 133 231 1 Y 1 A LEU 519 ? B LEU 134 232 1 Y 1 A GLU 520 ? B GLU 135 233 1 Y 1 A HIS 521 ? B HIS 136 234 1 Y 1 A HIS 522 ? B HIS 137 235 1 Y 1 A HIS 523 ? B HIS 138 236 1 Y 1 A HIS 524 ? B HIS 139 237 1 Y 1 A HIS 525 ? B HIS 140 238 1 Y 1 A HIS 526 ? B HIS 141 239 1 Y 1 C MET 386 ? C MET 1 240 1 Y 1 C GLY 387 ? C GLY 2 241 1 Y 1 C SER 388 ? C SER 3 242 1 Y 1 C SER 389 ? C SER 4 243 1 Y 1 C ASP 390 ? C ASP 5 244 1 Y 1 C SER 391 ? C SER 6 245 1 Y 1 C MET 392 ? C MET 7 246 1 Y 1 C ALA 393 ? C ALA 8 247 1 Y 1 C GLN 394 ? C GLN 9 248 1 Y 1 C PRO 395 ? C PRO 10 249 1 Y 1 C PRO 396 ? C PRO 11 250 1 Y 1 C GLN 397 ? C GLN 12 251 1 Y 1 C THR 398 ? C THR 13 252 1 Y 1 C PRO 399 ? C PRO 14 253 1 Y 1 C GLU 400 ? C GLU 15 254 1 Y 1 C THR 401 ? C THR 16 255 1 Y 1 C SER 402 ? C SER 17 256 1 Y 1 C THR 403 ? C THR 18 257 1 Y 1 C PHE 404 ? C PHE 19 258 1 Y 1 C ARG 405 ? C ARG 20 259 1 Y 1 C ASN 406 ? C ASN 21 260 1 Y 1 C GLN 407 ? C GLN 22 261 1 Y 1 C MET 408 ? C MET 23 262 1 Y 1 C PRO 409 ? C PRO 24 263 1 Y 1 C SER 410 ? C SER 25 264 1 Y 1 C PRO 411 ? C PRO 26 265 1 Y 1 C THR 412 ? C THR 27 266 1 Y 1 C SER 413 ? C SER 28 267 1 Y 1 C THR 414 ? C THR 29 268 1 Y 1 C GLY 415 ? C GLY 30 269 1 Y 1 C THR 416 ? C THR 31 270 1 Y 1 C PRO 417 ? C PRO 32 271 1 Y 1 C SER 418 ? C SER 33 272 1 Y 1 C PRO 419 ? C PRO 34 273 1 Y 1 C GLY 420 ? C GLY 35 274 1 Y 1 C PRO 421 ? C PRO 36 275 1 Y 1 C ARG 422 ? C ARG 37 276 1 Y 1 C GLY 423 ? C GLY 38 277 1 Y 1 C ASN 424 ? C ASN 39 278 1 Y 1 C GLN 425 ? C GLN 40 279 1 Y 1 C GLY 426 ? C GLY 41 280 1 Y 1 C ALA 427 ? C ALA 42 281 1 Y 1 C GLU 428 ? C GLU 43 282 1 Y 1 C ARG 429 ? C ARG 44 283 1 Y 1 C GLN 430 ? C GLN 45 284 1 Y 1 C GLY 431 ? C GLY 46 285 1 Y 1 C MET 432 ? C MET 47 286 1 Y 1 C ASN 433 ? C ASN 48 287 1 Y 1 C TRP 434 ? C TRP 49 288 1 Y 1 C SER 435 ? C SER 50 289 1 Y 1 C CYS 436 ? C CYS 51 290 1 Y 1 C ARG 437 ? C ARG 52 291 1 Y 1 C THR 438 ? C THR 53 292 1 Y 1 C PRO 439 ? C PRO 54 293 1 Y 1 C GLU 440 ? C GLU 55 294 1 Y 1 C PRO 441 ? C PRO 56 295 1 Y 1 C ASN 442 ? C ASN 57 296 1 Y 1 C PRO 443 ? C PRO 58 297 1 Y 1 C VAL 444 ? C VAL 59 298 1 Y 1 C THR 445 ? C THR 60 299 1 Y 1 C GLY 446 ? C GLY 61 300 1 Y 1 C ARG 447 ? C ARG 62 301 1 Y 1 C GLN 470 ? C GLN 85 302 1 Y 1 C THR 471 ? C THR 86 303 1 Y 1 C THR 472 ? C THR 87 304 1 Y 1 C ALA 473 ? C ALA 88 305 1 Y 1 C LEU 474 ? C LEU 89 306 1 Y 1 C PRO 475 ? C PRO 90 307 1 Y 1 C THR 476 ? C THR 91 308 1 Y 1 C TRP 477 ? C TRP 92 309 1 Y 1 C GLY 478 ? C GLY 93 310 1 Y 1 C LEU 479 ? C LEU 94 311 1 Y 1 C ALA 480 ? C ALA 95 312 1 Y 1 C PRO 481 ? C PRO 96 313 1 Y 1 C SER 482 ? C SER 97 314 1 Y 1 C GLY 483 ? C GLY 98 315 1 Y 1 C LYS 484 ? C LYS 99 316 1 Y 1 C GLY 485 ? C GLY 100 317 1 Y 1 C ARG 486 ? C ARG 101 318 1 Y 1 C GLY 487 ? C GLY 102 319 1 Y 1 C LEU 488 ? C LEU 103 320 1 Y 1 C GLN 489 ? C GLN 104 321 1 Y 1 C HIS 490 ? C HIS 105 322 1 Y 1 C PRO 491 ? C PRO 106 323 1 Y 1 C PRO 492 ? C PRO 107 324 1 Y 1 C PRO 493 ? C PRO 108 325 1 Y 1 C VAL 494 ? C VAL 109 326 1 Y 1 C GLY 495 ? C GLY 110 327 1 Y 1 C SER 496 ? C SER 111 328 1 Y 1 C GLN 497 ? C GLN 112 329 1 Y 1 C GLU 498 ? C GLU 113 330 1 Y 1 C GLY 499 ? C GLY 114 331 1 Y 1 C PRO 500 ? C PRO 115 332 1 Y 1 C LYS 501 ? C LYS 116 333 1 Y 1 C ASP 502 ? C ASP 117 334 1 Y 1 C PRO 503 ? C PRO 118 335 1 Y 1 C GLU 504 ? C GLU 119 336 1 Y 1 C ALA 505 ? C ALA 120 337 1 Y 1 C TRP 506 ? C TRP 121 338 1 Y 1 C SER 507 ? C SER 122 339 1 Y 1 C ARG 508 ? C ARG 123 340 1 Y 1 C PRO 509 ? C PRO 124 341 1 Y 1 C GLN 510 ? C GLN 125 342 1 Y 1 C GLY 511 ? C GLY 126 343 1 Y 1 C TRP 512 ? C TRP 127 344 1 Y 1 C TYR 513 ? C TYR 128 345 1 Y 1 C ASN 514 ? C ASN 129 346 1 Y 1 C HIS 515 ? C HIS 130 347 1 Y 1 C SER 516 ? C SER 131 348 1 Y 1 C GLY 517 ? C GLY 132 349 1 Y 1 C LYS 518 ? C LYS 133 350 1 Y 1 C LEU 519 ? C LEU 134 351 1 Y 1 C GLU 520 ? C GLU 135 352 1 Y 1 C HIS 521 ? C HIS 136 353 1 Y 1 C HIS 522 ? C HIS 137 354 1 Y 1 C HIS 523 ? C HIS 138 355 1 Y 1 C HIS 524 ? C HIS 139 356 1 Y 1 C HIS 525 ? C HIS 140 357 1 Y 1 C HIS 526 ? C HIS 141 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -7.53 _em_helical_entity.axial_rise_per_subunit 4.80 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 55 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _atom_sites.entry_id 7DA4 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_