HEADER TRANSFERASE 16-OCT-20 7DAM TITLE ADENOSINE TRIPHOSPHATE PHOSPHORIBOSYLTRANSFERASE FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATP-PRTASE; COMPND 5 EC: 2.4.2.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN M66-2); SOURCE 3 ORGANISM_TAXID: 579112; SOURCE 4 STRAIN: M66-2; SOURCE 5 GENE: HISG, VCM66_1088; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ADENOSINE TRIPHOSPHATE PHOSPHORIBOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.K.PAL,S.GOURINATH,B.K.BISWAL REVDAT 2 29-NOV-23 7DAM 1 REMARK REVDAT 1 20-OCT-21 7DAM 0 JRNL AUTH R.K.PAL,S.GOURINATH,B.K.BISWAL JRNL TITL ADENOSINE TRIPHOSPHATE PHOSPHORIBOSYLTRANSFERASE FROM VIBRIO JRNL TITL 2 CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1745 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3747 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.86000 REMARK 3 B22 (A**2) : 11.86000 REMARK 3 B33 (A**2) : -23.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.534 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.724 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3782 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3445 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5163 ; 1.371 ; 1.627 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7840 ; 1.214 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 6.935 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;37.582 ;24.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 521 ;19.712 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.015 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4382 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 680 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 10 303 B 10 303 6192 0.160 0.050 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.543 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7DAM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300019036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H3D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH 4.6 REMARK 280 2.0 M SODIUM CHLORIDE, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.75600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.92279 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.44633 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 58.75600 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 33.92279 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.44633 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 58.75600 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 33.92279 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.44633 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 67.84558 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 80.89267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 67.84558 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 80.89267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 67.84558 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.89267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 77650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -117.51200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -58.75600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -101.76838 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 4 REMARK 465 ASN A 5 REMARK 465 ASP A 6 REMARK 465 MET A 7 REMARK 465 GLN A 8 REMARK 465 PRO A 239 REMARK 465 VAL A 240 REMARK 465 GLU A 241 REMARK 465 GLY A 252 REMARK 465 ALA A 253 REMARK 465 PRO A 260 REMARK 465 LEU A 261 REMARK 465 SER A 262 REMARK 465 ALA A 263 REMARK 465 ASP A 264 REMARK 465 LYS A 265 REMARK 465 SER A 266 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 ARG B 3 REMARK 465 LYS B 4 REMARK 465 ASN B 5 REMARK 465 ASP B 6 REMARK 465 MET B 7 REMARK 465 GLN B 8 REMARK 465 THR B 9 REMARK 465 GLY B 41 REMARK 465 GLU B 42 REMARK 465 ALA B 208 REMARK 465 ALA B 238 REMARK 465 PRO B 239 REMARK 465 VAL B 240 REMARK 465 GLU B 241 REMARK 465 LYS B 242 REMARK 465 THR B 257 REMARK 465 PRO B 260 REMARK 465 LEU B 261 REMARK 465 SER B 262 REMARK 465 ALA B 263 REMARK 465 ASP B 264 REMARK 465 LYS B 265 REMARK 465 SER B 266 REMARK 465 LYS B 267 REMARK 465 VAL B 268 REMARK 465 ALA B 269 REMARK 465 VAL B 270 REMARK 465 HIS B 271 REMARK 465 MET B 272 REMARK 465 GLU B 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 12 CG CD1 CD2 REMARK 470 ARG A 13 NH1 REMARK 470 LYS A 18 CE NZ REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 22 CG CD1 CD2 REMARK 470 GLN A 27 CG CD OE1 NE2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 ASN A 38 CG OD1 ND2 REMARK 470 MET A 40 CG SD CE REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 44 CG CD1 CD2 REMARK 470 ASN A 50 CG OD1 ND2 REMARK 470 MET A 51 CG SD CE REMARK 470 ARG A 59 NE CZ NH1 NH2 REMARK 470 ASP A 69 CG OD1 OD2 REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 96 CG OD1 ND2 REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 TYR A 121 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 124 CG CD REMARK 470 GLN A 125 CB CG CD OE1 NE2 REMARK 470 ASP A 126 CG OD1 OD2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 MET A 155 CG SD CE REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 ARG A 165 NE CZ NH1 NH2 REMARK 470 THR A 181 OG1 CG2 REMARK 470 LEU A 182 CG CD1 CD2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 LYS A 188 NZ REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 PRO A 204 CG CD REMARK 470 PHE A 207 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 ARG A 221 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 TYR A 233 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 ILE A 246 CG1 CG2 CD1 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 ASP A 255 CG OD1 OD2 REMARK 470 VAL A 258 CG1 CG2 REMARK 470 LEU A 259 CG CD1 CD2 REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 VAL A 268 CG1 CG2 REMARK 470 VAL A 270 CG1 CG2 REMARK 470 MET A 272 CG SD CE REMARK 470 GLU A 276 CG CD OE1 OE2 REMARK 470 ASN A 277 CG OD1 ND2 REMARK 470 MET A 283 SD CE REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 GLN A 285 CG CD OE1 NE2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LEU A 289 CG CD1 CD2 REMARK 470 SER A 292 OG REMARK 470 LEU A 295 CG CD1 CD2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 MET A 303 CG SD CE REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 GLN B 17 CG CD OE1 NE2 REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 ARG B 21 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 24 CG CD OE1 NE2 REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 PHE B 37 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE B 39 CG1 CG2 CD1 REMARK 470 MET B 40 CG SD CE REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 50 CG OD1 ND2 REMARK 470 MET B 51 CG SD CE REMARK 470 ARG B 59 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 76 CE1 CE2 CZ REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 ARG B 86 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 95 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 96 CG OD1 ND2 REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 MET B 104 SD CE REMARK 470 PHE B 106 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 TYR B 121 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 122 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 141 CG CD CE NZ REMARK 470 MET B 155 CG SD CE REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 ARG B 165 CG CD NE CZ NH1 NH2 REMARK 470 SER B 177 OG REMARK 470 GLU B 183 CG CD OE1 OE2 REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 470 PHE B 194 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 ARG B 203 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 204 CG CD REMARK 470 ASP B 210 CG OD1 OD2 REMARK 470 LYS B 211 CG CD CE NZ REMARK 470 ASP B 216 CG OD1 OD2 REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 LEU B 218 CG CD1 CD2 REMARK 470 ARG B 221 CG CD NE CZ NH1 NH2 REMARK 470 MET B 222 CG SD CE REMARK 470 GLN B 226 CG CD OE1 NE2 REMARK 470 LYS B 229 CG CD CE NZ REMARK 470 LYS B 232 CG CD CE NZ REMARK 470 TYR B 233 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET B 235 CG SD CE REMARK 470 LEU B 236 CG CD1 CD2 REMARK 470 HIS B 237 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 245 CG CD OE1 NE2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 THR B 248 OG1 CG2 REMARK 470 LEU B 249 CG CD1 CD2 REMARK 470 PRO B 251 CG CD REMARK 470 GLU B 254 CD OE1 OE2 REMARK 470 ASP B 255 OD1 OD2 REMARK 470 PRO B 256 CG CD REMARK 470 VAL B 258 CG1 CG2 REMARK 470 LEU B 259 CG CD1 CD2 REMARK 470 GLU B 276 CG CD OE1 OE2 REMARK 470 ASN B 277 CG OD1 ND2 REMARK 470 PHE B 279 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP B 280 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 280 CZ3 CH2 REMARK 470 GLU B 281 CG CD OE1 OE2 REMARK 470 MET B 283 CG SD CE REMARK 470 GLU B 284 CG CD OE1 OE2 REMARK 470 GLN B 285 CG CD OE1 NE2 REMARK 470 LEU B 286 CG CD1 CD2 REMARK 470 LYS B 287 CG CD CE NZ REMARK 470 LEU B 289 CG CD1 CD2 REMARK 470 SER B 292 OG REMARK 470 SER B 293 OG REMARK 470 GLU B 300 CG CD OE1 OE2 REMARK 470 LYS B 301 CG CD CE NZ REMARK 470 MET B 303 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 40 59.02 37.88 REMARK 500 LEU A 101 -53.49 -121.67 REMARK 500 TYR A 121 177.98 85.82 REMARK 500 ARG A 122 -67.36 66.05 REMARK 500 PRO A 124 -46.58 154.99 REMARK 500 ASP A 126 -132.33 58.80 REMARK 500 ARG A 203 141.87 -33.38 REMARK 500 ALA A 208 -122.92 50.58 REMARK 500 ALA A 209 -61.07 -154.56 REMARK 500 PRO A 256 -137.56 -102.00 REMARK 500 THR A 257 162.80 87.77 REMARK 500 LEU B 101 -54.34 -121.83 REMARK 500 ASP B 118 -7.24 64.38 REMARK 500 TYR B 121 164.01 176.65 REMARK 500 ARG B 122 69.88 -150.17 REMARK 500 GLN B 125 -6.42 68.25 REMARK 500 LEU B 250 -9.57 94.54 REMARK 500 GLU B 276 -85.42 -130.54 REMARK 500 LEU B 278 73.76 -115.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 172 ALA B 173 149.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 406 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH A 407 DISTANCE = 7.19 ANGSTROMS DBREF 7DAM A 1 304 UNP C3LU29 C3LU29_VIBCM 1 304 DBREF 7DAM B 1 304 UNP C3LU29 C3LU29_VIBCM 1 304 SEQADV 7DAM HIS A -5 UNP C3LU29 EXPRESSION TAG SEQADV 7DAM HIS A -4 UNP C3LU29 EXPRESSION TAG SEQADV 7DAM HIS A -3 UNP C3LU29 EXPRESSION TAG SEQADV 7DAM HIS A -2 UNP C3LU29 EXPRESSION TAG SEQADV 7DAM HIS A -1 UNP C3LU29 EXPRESSION TAG SEQADV 7DAM HIS A 0 UNP C3LU29 EXPRESSION TAG SEQADV 7DAM HIS B -5 UNP C3LU29 EXPRESSION TAG SEQADV 7DAM HIS B -4 UNP C3LU29 EXPRESSION TAG SEQADV 7DAM HIS B -3 UNP C3LU29 EXPRESSION TAG SEQADV 7DAM HIS B -2 UNP C3LU29 EXPRESSION TAG SEQADV 7DAM HIS B -1 UNP C3LU29 EXPRESSION TAG SEQADV 7DAM HIS B 0 UNP C3LU29 EXPRESSION TAG SEQRES 1 A 310 HIS HIS HIS HIS HIS HIS MET GLN ARG LYS ASN ASP MET SEQRES 2 A 310 GLN THR GLN ARG LEU ARG ILE ALA ILE GLN LYS LYS GLY SEQRES 3 A 310 ARG LEU SER GLN GLU CYS GLN GLU LEU LEU LYS LYS CYS SEQRES 4 A 310 GLY VAL LYS PHE ASN ILE MET GLY GLU ARG LEU VAL VAL SEQRES 5 A 310 HIS SER LEU ASN MET PRO ILE ASP LEU LEU LEU VAL ARG SEQRES 6 A 310 ASP ASP ASP ILE PRO GLY LEU ILE MET ASP GLY VAL VAL SEQRES 7 A 310 ASP LEU GLY PHE VAL GLY GLU ASN VAL LEU GLU GLU THR SEQRES 8 A 310 ARG LEU ASP ARG LEU ALA LEU ASN GLN ARG ASN GLU PHE SEQRES 9 A 310 THR THR LEU ARG ARG MET ASP PHE GLY GLY CYS ARG LEU SEQRES 10 A 310 SER ILE ALA ILE GLU LYS ASP ALA GLU TYR ARG GLY PRO SEQRES 11 A 310 GLN ASP LEU ASN GLY LYS ARG ILE ALA THR THR TYR PRO SEQRES 12 A 310 GLN LEU LEU LYS ALA TYR MET ASP ARG GLN GLY VAL ASP SEQRES 13 A 310 PHE SER THR CYS MET LEU THR GLY SER VAL GLU VAL ALA SEQRES 14 A 310 PRO ARG ALA GLY LEU ALA ASP ALA ILE ALA ASP LEU VAL SEQRES 15 A 310 SER THR GLY ALA THR LEU GLU ALA ASN GLY LEU LYS GLU SEQRES 16 A 310 VAL GLU VAL ILE PHE GLU SER LYS ALA THR LEU ILE GLN SEQRES 17 A 310 ARG PRO GLY ALA PHE ALA ALA ASP LYS ALA ALA LEU ILE SEQRES 18 A 310 ASP LYS LEU LEU THR ARG MET HIS GLY VAL GLN GLN ALA SEQRES 19 A 310 LYS GLU SER LYS TYR ILE MET LEU HIS ALA PRO VAL GLU SEQRES 20 A 310 LYS LEU ALA GLN ILE LYS THR LEU LEU PRO GLY ALA GLU SEQRES 21 A 310 ASP PRO THR VAL LEU PRO LEU SER ALA ASP LYS SER LYS SEQRES 22 A 310 VAL ALA VAL HIS MET VAL SER SER GLU ASN LEU PHE TRP SEQRES 23 A 310 GLU THR MET GLU GLN LEU LYS ALA LEU GLY ALA SER SER SEQRES 24 A 310 ILE LEU VAL LEU PRO ILE GLU LYS MET MET GLU SEQRES 1 B 310 HIS HIS HIS HIS HIS HIS MET GLN ARG LYS ASN ASP MET SEQRES 2 B 310 GLN THR GLN ARG LEU ARG ILE ALA ILE GLN LYS LYS GLY SEQRES 3 B 310 ARG LEU SER GLN GLU CYS GLN GLU LEU LEU LYS LYS CYS SEQRES 4 B 310 GLY VAL LYS PHE ASN ILE MET GLY GLU ARG LEU VAL VAL SEQRES 5 B 310 HIS SER LEU ASN MET PRO ILE ASP LEU LEU LEU VAL ARG SEQRES 6 B 310 ASP ASP ASP ILE PRO GLY LEU ILE MET ASP GLY VAL VAL SEQRES 7 B 310 ASP LEU GLY PHE VAL GLY GLU ASN VAL LEU GLU GLU THR SEQRES 8 B 310 ARG LEU ASP ARG LEU ALA LEU ASN GLN ARG ASN GLU PHE SEQRES 9 B 310 THR THR LEU ARG ARG MET ASP PHE GLY GLY CYS ARG LEU SEQRES 10 B 310 SER ILE ALA ILE GLU LYS ASP ALA GLU TYR ARG GLY PRO SEQRES 11 B 310 GLN ASP LEU ASN GLY LYS ARG ILE ALA THR THR TYR PRO SEQRES 12 B 310 GLN LEU LEU LYS ALA TYR MET ASP ARG GLN GLY VAL ASP SEQRES 13 B 310 PHE SER THR CYS MET LEU THR GLY SER VAL GLU VAL ALA SEQRES 14 B 310 PRO ARG ALA GLY LEU ALA ASP ALA ILE ALA ASP LEU VAL SEQRES 15 B 310 SER THR GLY ALA THR LEU GLU ALA ASN GLY LEU LYS GLU SEQRES 16 B 310 VAL GLU VAL ILE PHE GLU SER LYS ALA THR LEU ILE GLN SEQRES 17 B 310 ARG PRO GLY ALA PHE ALA ALA ASP LYS ALA ALA LEU ILE SEQRES 18 B 310 ASP LYS LEU LEU THR ARG MET HIS GLY VAL GLN GLN ALA SEQRES 19 B 310 LYS GLU SER LYS TYR ILE MET LEU HIS ALA PRO VAL GLU SEQRES 20 B 310 LYS LEU ALA GLN ILE LYS THR LEU LEU PRO GLY ALA GLU SEQRES 21 B 310 ASP PRO THR VAL LEU PRO LEU SER ALA ASP LYS SER LYS SEQRES 22 B 310 VAL ALA VAL HIS MET VAL SER SER GLU ASN LEU PHE TRP SEQRES 23 B 310 GLU THR MET GLU GLN LEU LYS ALA LEU GLY ALA SER SER SEQRES 24 B 310 ILE LEU VAL LEU PRO ILE GLU LYS MET MET GLU FORMUL 3 HOH *10(H2 O) HELIX 1 AA1 GLY A 20 CYS A 33 1 14 HELIX 2 AA2 ARG A 59 ASP A 61 5 3 HELIX 3 AA3 ASP A 62 ASP A 69 1 8 HELIX 4 AA4 GLU A 79 LEU A 92 1 14 HELIX 5 AA5 TYR A 136 GLY A 148 1 13 HELIX 6 AA6 SER A 159 GLU A 161 5 3 HELIX 7 AA7 VAL A 162 GLY A 167 1 6 HELIX 8 AA8 GLY A 179 ASN A 185 1 7 HELIX 9 AA9 ALA A 209 SER A 231 1 23 HELIX 10 AB1 LEU A 243 LEU A 249 1 7 HELIX 11 AB2 PHE A 279 LEU A 289 1 11 HELIX 12 AB3 GLY B 20 CYS B 33 1 14 HELIX 13 AB4 ARG B 59 ASP B 61 5 3 HELIX 14 AB5 ASP B 62 ASP B 69 1 8 HELIX 15 AB6 GLU B 79 LEU B 92 1 14 HELIX 16 AB7 TYR B 136 GLY B 148 1 13 HELIX 17 AB8 SER B 159 GLU B 161 5 3 HELIX 18 AB9 VAL B 162 GLY B 167 1 6 HELIX 19 AC1 GLY B 179 ASN B 185 1 7 HELIX 20 AC2 ASP B 210 SER B 231 1 22 HELIX 21 AC3 ALA B 244 THR B 248 1 5 HELIX 22 AC4 PHE B 279 LEU B 289 1 11 SHEET 1 AA1 6 VAL A 45 SER A 48 0 SHEET 2 AA1 6 ILE A 53 VAL A 58 -1 O LEU A 55 N VAL A 46 SHEET 3 AA1 6 LEU A 12 GLN A 17 1 N ILE A 14 O LEU A 56 SHEET 4 AA1 6 LEU A 74 GLY A 78 1 O LEU A 74 N ALA A 15 SHEET 5 AA1 6 ALA A 198 GLN A 202 -1 O THR A 199 N VAL A 77 SHEET 6 AA1 6 THR A 99 ARG A 103 -1 N ARG A 102 O LEU A 200 SHEET 1 AA2 5 SER A 152 MET A 155 0 SHEET 2 AA2 5 ARG A 131 THR A 134 1 N ILE A 132 O CYS A 154 SHEET 3 AA2 5 ALA A 171 VAL A 176 1 O ALA A 171 N ALA A 133 SHEET 4 AA2 5 CYS A 109 GLU A 116 -1 N ARG A 110 O VAL A 176 SHEET 5 AA2 5 LEU A 187 SER A 196 -1 O VAL A 190 N ILE A 113 SHEET 1 AA3 3 VAL A 273 SER A 274 0 SHEET 2 AA3 3 LYS A 232 HIS A 237 -1 N LYS A 232 O SER A 274 SHEET 3 AA3 3 SER A 292 PRO A 298 -1 O LEU A 295 N MET A 235 SHEET 1 AA4 6 VAL B 45 HIS B 47 0 SHEET 2 AA4 6 ILE B 53 VAL B 58 -1 O LEU B 55 N VAL B 46 SHEET 3 AA4 6 LEU B 12 GLN B 17 1 N LEU B 12 O ASP B 54 SHEET 4 AA4 6 LEU B 74 GLY B 78 1 O LEU B 74 N ALA B 15 SHEET 5 AA4 6 ALA B 198 GLN B 202 -1 O THR B 199 N VAL B 77 SHEET 6 AA4 6 THR B 99 ARG B 103 -1 N ARG B 102 O LEU B 200 SHEET 1 AA5 5 SER B 152 MET B 155 0 SHEET 2 AA5 5 ARG B 131 THR B 134 1 N ILE B 132 O CYS B 154 SHEET 3 AA5 5 ALA B 171 VAL B 176 1 O ALA B 171 N ALA B 133 SHEET 4 AA5 5 CYS B 109 GLU B 116 -1 N ARG B 110 O VAL B 176 SHEET 5 AA5 5 LEU B 187 SER B 196 -1 O VAL B 190 N ILE B 113 SHEET 1 AA6 2 LYS B 232 HIS B 237 0 SHEET 2 AA6 2 SER B 292 PRO B 298 -1 O LEU B 295 N MET B 235 CRYST1 117.512 117.512 121.339 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008510 0.004913 0.000000 0.00000 SCALE2 0.000000 0.009826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008241 0.00000