HEADER OXIDOREDUCTASE 21-OCT-20 7DBU TITLE CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF ANHYDROBIOSIS-RELATED MN- TITLE 2 DEPENDENT PEROXIDASE (AMNP) FROM RAMAZZOTTIUS VARIEORNATUS (ZN2+- TITLE 3 BOUND FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMNP/G12777; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RAMAZZOTTIUS VARIEORNATUS; SOURCE 3 ORGANISM_COMMON: WATER BEAR; SOURCE 4 ORGANISM_TAXID: 947166; SOURCE 5 GENE: RVY_12637-1, RVY_12637.1, RVY_12637; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28B KEYWDS PEROXIDASE, MANGANESE, TARDIGRADE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.YOSHIDA,T.SATOH,C.OTA,S.TANAKA,D.D.HORIKAWA,M.TOMITA,K.KATO, AUTHOR 2 K.ARAKAWA REVDAT 2 15-JUN-22 7DBU 1 JRNL REVDAT 1 06-OCT-21 7DBU 0 JRNL AUTH Y.YOSHIDA,T.SATOH,C.OTA,S.TANAKA,D.D.HORIKAWA,M.TOMITA, JRNL AUTH 2 K.KATO,K.ARAKAWA JRNL TITL TIME-SERIES TRANSCRIPTOMIC SCREENING OF FACTORS CONTRIBUTING JRNL TITL 2 TO THE CROSS-TOLERANCE TO UV RADIATION AND ANHYDROBIOSIS IN JRNL TITL 3 TARDIGRADES. JRNL REF BMC GENOMICS V. 23 405 2022 JRNL REFN ESSN 1471-2164 JRNL PMID 35643424 JRNL DOI 10.1186/S12864-022-08642-1 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 38053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1589 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2430 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -2.03000 REMARK 3 B33 (A**2) : 1.75000 REMARK 3 B12 (A**2) : 0.96000 REMARK 3 B13 (A**2) : -0.51000 REMARK 3 B23 (A**2) : 1.38000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.624 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2505 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2278 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3404 ; 1.933 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5299 ; 1.452 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 7.617 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;30.033 ;21.884 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;15.072 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;20.644 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2861 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 541 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1283 ; 2.836 ; 1.558 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1282 ; 2.833 ; 1.556 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1601 ; 3.332 ; 2.358 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1602 ; 3.333 ; 2.359 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1222 ; 5.248 ; 1.940 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1223 ; 5.248 ; 1.944 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1799 ; 6.397 ; 2.782 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2745 ; 6.070 ;20.331 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2704 ; 5.830 ;19.992 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4783 ;15.638 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 66 226 B 66 226 4837 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7DBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300019100. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AICHISR REMARK 200 BEAMLINE : BL2S1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1200 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40100 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 43.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 48.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.03900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 100 MM IMIDAZOLE-HCL REMARK 280 BUFFER (PH 7.5), 300 MM ZINC ACETATE, AND 50 MM SODIUM FLUORIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 465 HIS A 61 REMARK 465 MET A 62 REMARK 465 GLY A 63 REMARK 465 ARG A 64 REMARK 465 PHE A 65 REMARK 465 ALA A 227 REMARK 465 PRO A 228 REMARK 465 SER A 229 REMARK 465 SER A 230 REMARK 465 LEU A 231 REMARK 465 GLY B 59 REMARK 465 SER B 60 REMARK 465 HIS B 61 REMARK 465 MET B 62 REMARK 465 GLY B 63 REMARK 465 ARG B 64 REMARK 465 PHE B 65 REMARK 465 LEU B 165 REMARK 465 SER B 166 REMARK 465 SER B 167 REMARK 465 ALA B 227 REMARK 465 PRO B 228 REMARK 465 SER B 229 REMARK 465 SER B 230 REMARK 465 LEU B 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 128 O HOH A 401 1.90 REMARK 500 OD1 ASP A 184 O HOH A 402 1.99 REMARK 500 O LEU A 165 O HOH A 403 1.99 REMARK 500 O HOH A 496 O HOH A 523 2.01 REMARK 500 OE1 GLU A 219 O HOH A 404 2.03 REMARK 500 OE1 GLU B 219 O HOH B 401 2.05 REMARK 500 O ASP A 163 NE2 GLN A 168 2.06 REMARK 500 OD1 ASP A 131 O HOH A 405 2.12 REMARK 500 NH2 ARG A 77 O HOH A 406 2.13 REMARK 500 OD1 ASP B 184 O HOH B 402 2.13 REMARK 500 OD2 ASP A 131 O HOH A 407 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 532 O HOH B 483 1445 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 92 16.17 55.32 REMARK 500 ALA A 96 78.17 -109.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 555 DISTANCE = 7.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 67 OD1 REMARK 620 2 ASP A 67 OD2 53.2 REMARK 620 3 HOH B 440 O 97.6 90.2 REMARK 620 4 HOH B 489 O 142.3 91.5 95.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 72 OE2 REMARK 620 2 GLU B 108 OE2 63.1 REMARK 620 3 HOH B 480 O 63.5 3.7 REMARK 620 4 HOH B 484 O 64.4 1.9 2.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 79 OD1 REMARK 620 2 ASP A 79 OD2 53.3 REMARK 620 3 HOH A 447 O 98.1 61.2 REMARK 620 4 HOH A 521 O 103.6 153.7 142.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 92 OD2 REMARK 620 2 ASP A 98 OD2 93.4 REMARK 620 3 ASP A 161 OD1 128.3 123.3 REMARK 620 4 ASP A 163 OD2 108.6 93.7 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 108 OE2 REMARK 620 2 GLU B 72 OE2 44.2 REMARK 620 3 HOH B 483 O 46.1 2.0 REMARK 620 4 HOH B 491 O 45.3 2.6 2.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 169 OD1 REMARK 620 2 GLU A 170 OE2 101.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 513 O REMARK 620 2 ASP B 79 OD1 118.2 REMARK 620 3 ASP B 79 OD2 169.6 53.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 67 OD1 REMARK 620 2 ASP B 67 OD2 53.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 74 OE2 REMARK 620 2 HOH B 457 O 114.6 REMARK 620 3 HOH B 485 O 89.7 75.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 92 OD2 REMARK 620 2 ASP B 98 OD2 95.4 REMARK 620 3 ASP B 161 OD1 123.7 123.1 REMARK 620 4 ASP B 163 OD2 112.1 95.7 103.7 REMARK 620 N 1 2 3 DBREF1 7DBU A 63 231 UNP A0A1D1VPD8_RAMVA DBREF2 7DBU A A0A1D1VPD8 63 231 DBREF1 7DBU B 63 231 UNP A0A1D1VPD8_RAMVA DBREF2 7DBU B A0A1D1VPD8 63 231 SEQADV 7DBU GLY A 59 UNP A0A1D1VPD EXPRESSION TAG SEQADV 7DBU SER A 60 UNP A0A1D1VPD EXPRESSION TAG SEQADV 7DBU HIS A 61 UNP A0A1D1VPD EXPRESSION TAG SEQADV 7DBU MET A 62 UNP A0A1D1VPD EXPRESSION TAG SEQADV 7DBU GLY B 59 UNP A0A1D1VPD EXPRESSION TAG SEQADV 7DBU SER B 60 UNP A0A1D1VPD EXPRESSION TAG SEQADV 7DBU HIS B 61 UNP A0A1D1VPD EXPRESSION TAG SEQADV 7DBU MET B 62 UNP A0A1D1VPD EXPRESSION TAG SEQRES 1 A 173 GLY SER HIS MET GLY ARG PHE ALA ASP PHE PHE ARG ILE SEQRES 2 A 173 GLU THR GLU ILE GLN ARG LEU ASP ASN PRO ALA GLY ILE SEQRES 3 A 173 LEU ALA ASN GLY LYS LYS CYS ASP PHE THR GLY ALA CYS SEQRES 4 A 173 ASP PRO VAL VAL THR ALA PHE LEU ASP LEU GLU SER PRO SEQRES 5 A 173 LEU SER PRO TRP PRO GLY SER VAL ALA ALA SER LYS TRP SEQRES 6 A 173 LYS THR ILE PHE GLU ALA THR ASP GLN ASN SER PRO THR SEQRES 7 A 173 ILE GLY ARG SER VAL ILE ARG ASP MET CYS GLY GLY SER SEQRES 8 A 173 ALA SER ASN VAL ASN LEU ARG VAL LEU VAL ASN ASP ALA SEQRES 9 A 173 ASP SER LEU SER SER GLN ASP GLU ILE GLY LYS PHE SER SEQRES 10 A 173 CYS LEU PHE GLN LEU ASP ALA ARG ASP VAL ALA MET ASP SEQRES 11 A 173 SER LEU SER ALA GLN TRP GLY PRO SER THR GLU CYS THR SEQRES 12 A 173 ALA GLU ALA GLN GLN GLY LYS ILE ARG LEU PHE ALA ARG SEQRES 13 A 173 ARG ARG ALA PHE GLU ILE PRO SER THR SER CYS ARG ALA SEQRES 14 A 173 PRO SER SER LEU SEQRES 1 B 173 GLY SER HIS MET GLY ARG PHE ALA ASP PHE PHE ARG ILE SEQRES 2 B 173 GLU THR GLU ILE GLN ARG LEU ASP ASN PRO ALA GLY ILE SEQRES 3 B 173 LEU ALA ASN GLY LYS LYS CYS ASP PHE THR GLY ALA CYS SEQRES 4 B 173 ASP PRO VAL VAL THR ALA PHE LEU ASP LEU GLU SER PRO SEQRES 5 B 173 LEU SER PRO TRP PRO GLY SER VAL ALA ALA SER LYS TRP SEQRES 6 B 173 LYS THR ILE PHE GLU ALA THR ASP GLN ASN SER PRO THR SEQRES 7 B 173 ILE GLY ARG SER VAL ILE ARG ASP MET CYS GLY GLY SER SEQRES 8 B 173 ALA SER ASN VAL ASN LEU ARG VAL LEU VAL ASN ASP ALA SEQRES 9 B 173 ASP SER LEU SER SER GLN ASP GLU ILE GLY LYS PHE SER SEQRES 10 B 173 CYS LEU PHE GLN LEU ASP ALA ARG ASP VAL ALA MET ASP SEQRES 11 B 173 SER LEU SER ALA GLN TRP GLY PRO SER THR GLU CYS THR SEQRES 12 B 173 ALA GLU ALA GLN GLN GLY LYS ILE ARG LEU PHE ALA ARG SEQRES 13 B 173 ARG ARG ALA PHE GLU ILE PRO SER THR SER CYS ARG ALA SEQRES 14 B 173 PRO SER SER LEU HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET ZN B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET ZN B 304 1 HET ZN B 305 1 HET ZN B 306 1 HETNAM ZN ZINC ION FORMUL 3 ZN 11(ZN 2+) FORMUL 14 HOH *252(H2 O) HELIX 1 AA1 LYS A 90 THR A 94 5 5 HELIX 2 AA2 ALA A 119 TRP A 123 5 5 HELIX 3 AA3 ASP A 181 ARG A 183 5 3 HELIX 4 AA4 PRO A 221 CYS A 225 5 5 HELIX 5 AA5 LYS B 90 THR B 94 5 5 HELIX 6 AA6 ALA B 119 TRP B 123 5 5 HELIX 7 AA7 ASP B 181 ARG B 183 5 3 HELIX 8 AA8 PRO B 221 CYS B 225 5 5 SHEET 1 AA1 4 THR A 136 CYS A 146 0 SHEET 2 AA1 4 PHE A 68 ASP A 79 -1 N PHE A 69 O MET A 145 SHEET 3 AA1 4 ARG A 210 GLU A 219 -1 O ARG A 216 N GLU A 72 SHEET 4 AA1 4 VAL A 185 ALA A 186 1 N ALA A 186 O GLU A 219 SHEET 1 AA2 4 THR A 136 CYS A 146 0 SHEET 2 AA2 4 PHE A 68 ASP A 79 -1 N PHE A 69 O MET A 145 SHEET 3 AA2 4 ARG A 210 GLU A 219 -1 O ARG A 216 N GLU A 72 SHEET 4 AA2 4 THR A 198 GLU A 199 -1 N THR A 198 O ALA A 213 SHEET 1 AA3 5 LYS A 124 GLU A 128 0 SHEET 2 AA3 5 PRO A 99 ASP A 106 -1 N VAL A 101 O PHE A 127 SHEET 3 AA3 5 ASN A 152 ASP A 161 -1 O ASN A 154 N ASP A 106 SHEET 4 AA3 5 GLY A 172 GLN A 179 -1 O PHE A 174 N VAL A 157 SHEET 5 AA3 5 THR A 201 ALA A 202 -1 O THR A 201 N SER A 175 SHEET 1 AA4 4 THR B 136 CYS B 146 0 SHEET 2 AA4 4 PHE B 68 ASP B 79 -1 N PHE B 69 O MET B 145 SHEET 3 AA4 4 ARG B 210 GLU B 219 -1 O PHE B 218 N ARG B 70 SHEET 4 AA4 4 VAL B 185 ALA B 186 1 N ALA B 186 O GLU B 219 SHEET 1 AA5 4 THR B 136 CYS B 146 0 SHEET 2 AA5 4 PHE B 68 ASP B 79 -1 N PHE B 69 O MET B 145 SHEET 3 AA5 4 ARG B 210 GLU B 219 -1 O PHE B 218 N ARG B 70 SHEET 4 AA5 4 THR B 198 GLU B 199 -1 N THR B 198 O ALA B 213 SHEET 1 AA6 5 LYS B 124 GLU B 128 0 SHEET 2 AA6 5 PRO B 99 ASP B 106 -1 N VAL B 101 O ILE B 126 SHEET 3 AA6 5 ASN B 152 ASP B 161 -1 O ASN B 154 N ASP B 106 SHEET 4 AA6 5 GLY B 172 GLN B 179 -1 O PHE B 174 N VAL B 157 SHEET 5 AA6 5 THR B 201 ALA B 202 -1 O THR B 201 N SER B 175 SSBOND 1 CYS A 91 CYS A 97 1555 1555 2.10 SSBOND 2 CYS A 146 CYS A 225 1555 1555 2.03 SSBOND 3 CYS A 176 CYS A 200 1555 1555 2.02 SSBOND 4 CYS B 91 CYS B 97 1555 1555 2.11 SSBOND 5 CYS B 146 CYS B 225 1555 1555 2.03 SSBOND 6 CYS B 176 CYS B 200 1555 1555 1.97 LINK OD1 ASP A 67 ZN ZN A 302 1555 1555 2.67 LINK OD2 ASP A 67 ZN ZN A 302 1555 1555 2.08 LINK OE2 GLU A 72 ZN ZN B 303 1555 1545 1.85 LINK OE2 GLU A 74 ZN ZN A 303 1555 1555 1.96 LINK OD1 ASP A 79 ZN ZN A 305 1555 1555 1.80 LINK OD2 ASP A 79 ZN ZN A 305 1555 1555 2.66 LINK OD2 ASP A 92 ZN ZN A 301 1555 1555 1.98 LINK OD2 ASP A 98 ZN ZN A 301 1555 1555 1.96 LINK OE2 GLU A 108 ZN ZN B 301 1555 1445 1.91 LINK OD1 ASP A 161 ZN ZN A 301 1555 1555 1.97 LINK OD2 ASP A 163 ZN ZN A 301 1555 1555 1.94 LINK OD1 ASP A 169 ZN ZN A 304 1555 1555 2.12 LINK OE2 GLU A 170 ZN ZN A 304 1555 1555 2.15 LINK ZN ZN A 302 O HOH B 440 1555 1445 2.46 LINK ZN ZN A 302 O HOH B 489 1555 1445 2.61 LINK ZN ZN A 305 O HOH A 447 1555 1555 2.62 LINK ZN ZN A 305 O HOH A 521 1555 1555 2.30 LINK O HOH A 513 ZN ZN B 306 1655 1555 2.69 LINK OD1 ASP B 67 ZN ZN B 304 1555 1555 2.62 LINK OD2 ASP B 67 ZN ZN B 304 1555 1555 2.17 LINK OE2 GLU B 72 ZN ZN B 301 1555 1555 1.90 LINK OE2 GLU B 74 ZN ZN B 305 1555 1555 1.96 LINK OD1 ASP B 79 ZN ZN B 306 1555 1555 1.79 LINK OD2 ASP B 79 ZN ZN B 306 1555 1555 2.62 LINK OD2 ASP B 92 ZN ZN B 302 1555 1555 1.92 LINK OD2 ASP B 98 ZN ZN B 302 1555 1555 1.87 LINK OE2 GLU B 108 ZN ZN B 303 1555 1555 1.91 LINK OD1 ASP B 161 ZN ZN B 302 1555 1555 2.01 LINK OD2 ASP B 163 ZN ZN B 302 1555 1555 1.95 LINK ZN ZN B 301 O HOH B 483 1555 1555 2.05 LINK ZN ZN B 301 O HOH B 491 1555 1555 2.12 LINK ZN ZN B 303 O HOH B 480 1555 1555 1.88 LINK ZN ZN B 303 O HOH B 484 1555 1555 2.11 LINK ZN ZN B 305 O HOH B 457 1555 1555 2.25 LINK ZN ZN B 305 O HOH B 485 1555 1555 2.70 CISPEP 1 TRP A 114 PRO A 115 0 8.18 CISPEP 2 TRP B 114 PRO B 115 0 6.83 CRYST1 41.293 48.537 49.034 73.25 68.61 89.95 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024217 -0.000019 -0.009968 0.00000 SCALE2 0.000000 0.020603 -0.006701 0.00000 SCALE3 0.000000 0.000000 0.023032 0.00000