HEADER DNA BINDING PROTEIN/DNA 26-OCT-20 7DCI TITLE CRYSTAL STRUCTURE OF HSF2 DNA-BINDING DOMAIN IN COMPLEX WITH 2-SITE TITLE 2 HSE DNA IN THE HEAD-TO-HEAD ORIENTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK FACTOR PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSF 2,HEAT SHOCK TRANSCRIPTION FACTOR 2,HSTF 2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*GP*GP*AP*AP*TP*AP*TP*TP*CP*CP*C)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSF2, HSTF2; SOURCE 6 EXPRESSION_SYSTEM: DNA SATELLITES; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 2609695; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: DNA SATELLITES; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 2609695 KEYWDS DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.WEI,L.WEI REVDAT 2 29-NOV-23 7DCI 1 REMARK REVDAT 1 14-JUL-21 7DCI 0 JRNL AUTH L.WEI,L.WEI JRNL TITL CRYSTAL STRUCTURE OF HSF2 DNA-BINDING DOMAIN IN COMPLEX WITH JRNL TITL 2 2-SITE HSE DNA IN THE HEAD-TO-HEAD ORIENTATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 13957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9770 - 2.9072 0.97 2783 150 0.1614 0.1902 REMARK 3 2 2.9072 - 2.3076 0.98 2763 135 0.1871 0.2093 REMARK 3 3 2.3076 - 2.0159 0.97 2706 143 0.1754 0.2121 REMARK 3 4 2.0159 - 1.8316 0.96 2670 160 0.2030 0.2471 REMARK 3 5 1.8316 - 1.7004 0.83 2311 136 0.2408 0.2487 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1080 REMARK 3 ANGLE : 0.740 1506 REMARK 3 CHIRALITY : 0.046 159 REMARK 3 PLANARITY : 0.004 152 REMARK 3 DIHEDRAL : 14.245 593 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2502 -11.6097 12.5063 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.2168 REMARK 3 T33: 0.2009 T12: 0.0497 REMARK 3 T13: 0.0054 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 0.0369 L22: 0.0393 REMARK 3 L33: 0.0822 L12: 0.0381 REMARK 3 L13: -0.0347 L23: -0.0607 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: -0.3095 S13: 0.2629 REMARK 3 S21: 0.0702 S22: 0.0339 S23: 0.2553 REMARK 3 S31: -0.0469 S32: -0.1840 S33: 0.0099 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8401 -2.0664 5.2952 REMARK 3 T TENSOR REMARK 3 T11: 0.2839 T22: 0.0678 REMARK 3 T33: 0.4259 T12: 0.0522 REMARK 3 T13: -0.1381 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.0237 L22: 0.1464 REMARK 3 L33: 0.9496 L12: 0.3240 REMARK 3 L13: -0.2525 L23: 0.0814 REMARK 3 S TENSOR REMARK 3 S11: -0.0796 S12: 0.0435 S13: 0.5360 REMARK 3 S21: 0.5440 S22: 0.1862 S23: -0.1699 REMARK 3 S31: -0.6881 S32: 0.0085 S33: 0.0468 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3205 -8.8814 -1.1317 REMARK 3 T TENSOR REMARK 3 T11: 0.2073 T22: 0.1859 REMARK 3 T33: 0.2596 T12: -0.0058 REMARK 3 T13: -0.0867 T23: 0.0416 REMARK 3 L TENSOR REMARK 3 L11: 0.0893 L22: 0.1379 REMARK 3 L33: 0.0784 L12: -0.1401 REMARK 3 L13: -0.0448 L23: 0.0393 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: 0.1265 S13: 0.1475 REMARK 3 S21: -0.3051 S22: -0.0283 S23: 0.0624 REMARK 3 S31: -0.0888 S32: -0.0126 S33: 0.0068 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5360 -2.5369 3.9974 REMARK 3 T TENSOR REMARK 3 T11: 0.2866 T22: 0.1584 REMARK 3 T33: 0.3890 T12: -0.0232 REMARK 3 T13: -0.1178 T23: 0.0637 REMARK 3 L TENSOR REMARK 3 L11: 0.1045 L22: 0.3753 REMARK 3 L33: 0.0828 L12: 0.0086 REMARK 3 L13: 0.0079 L23: 0.0576 REMARK 3 S TENSOR REMARK 3 S11: 0.1712 S12: 0.0734 S13: 0.2397 REMARK 3 S21: -0.0187 S22: -0.2557 S23: -0.2791 REMARK 3 S31: -0.0364 S32: 0.0080 S33: -0.0100 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7291 -12.1453 9.9752 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.1369 REMARK 3 T33: 0.2042 T12: 0.0062 REMARK 3 T13: -0.0790 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.1724 L22: 0.1213 REMARK 3 L33: 0.1973 L12: -0.1496 REMARK 3 L13: 0.1187 L23: -0.1109 REMARK 3 S TENSOR REMARK 3 S11: -0.1674 S12: -0.0853 S13: 0.2495 REMARK 3 S21: 0.2065 S22: 0.0200 S23: -0.1125 REMARK 3 S31: -0.0944 S32: 0.0404 S33: -0.1181 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5177 -14.8022 -2.6243 REMARK 3 T TENSOR REMARK 3 T11: 0.3162 T22: 0.2060 REMARK 3 T33: 0.1814 T12: -0.0101 REMARK 3 T13: -0.0220 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.0541 L22: 0.0418 REMARK 3 L33: 0.0282 L12: -0.0131 REMARK 3 L13: 0.0481 L23: -0.0290 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: 0.0720 S13: 0.2745 REMARK 3 S21: -0.4346 S22: -0.1088 S23: -0.0749 REMARK 3 S31: -0.1011 S32: 0.1652 S33: -0.0035 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6203 -18.6322 6.9683 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1897 REMARK 3 T33: 0.1860 T12: -0.0052 REMARK 3 T13: 0.0062 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 0.2884 L22: 0.3629 REMARK 3 L33: 0.2803 L12: 0.1994 REMARK 3 L13: -0.0299 L23: 0.1344 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.0692 S13: 0.0011 REMARK 3 S21: 0.0463 S22: 0.0749 S23: 0.2420 REMARK 3 S31: 0.0526 S32: -0.1228 S33: -0.0093 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2656 -22.3830 18.5138 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.2065 REMARK 3 T33: 0.1384 T12: 0.0065 REMARK 3 T13: -0.0065 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.1812 L22: 0.4597 REMARK 3 L33: 0.4104 L12: 0.0706 REMARK 3 L13: 0.1505 L23: -0.1726 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: -0.0597 S13: -0.0037 REMARK 3 S21: 0.0047 S22: 0.0042 S23: 0.0336 REMARK 3 S31: 0.0820 S32: 0.0190 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DCI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300019134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13957 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 37.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 7.440 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5HDK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM CITRATE AND 23% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.13400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.23600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.13400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.23600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -7.20327 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.97690 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 121 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 75 REMARK 465 ILE A 76 REMARK 465 ASP A 77 REMARK 465 SER A 78 REMARK 465 GLY A 79 REMARK 465 ILE A 80 REMARK 465 VAL A 81 REMARK 465 LYS A 82 REMARK 465 GLN A 83 REMARK 465 GLU A 84 REMARK 465 ARG A 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 371 O HOH B 111 1.81 REMARK 500 O HOH A 368 O HOH A 398 1.90 REMARK 500 O HOH B 130 O HOH B 151 1.94 REMARK 500 OE2 GLU A 47 O HOH A 301 1.99 REMARK 500 O HOH A 379 O HOH A 383 1.99 REMARK 500 O HOH B 148 O HOH B 156 2.00 REMARK 500 O HOH A 366 O HOH A 376 2.01 REMARK 500 O HOH A 301 O HOH A 387 2.09 REMARK 500 OE2 GLU A 19 O HOH A 302 2.10 REMARK 500 OP2 DT B 6 O HOH B 101 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 400 O HOH A 400 2555 2.03 REMARK 500 O HOH A 350 O HOH A 373 4445 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 54 40.45 -97.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 404 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 405 DISTANCE = 6.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 17 O REMARK 620 2 VAL A 18 O 80.1 REMARK 620 3 GLU A 20 O 102.8 103.1 REMARK 620 4 THR A 23 OG1 60.2 138.4 76.2 REMARK 620 5 ASN A 24 OD1 170.8 91.0 76.8 127.8 REMARK 620 6 ILE A 27 O 94.3 98.4 154.5 96.6 89.3 REMARK 620 N 1 2 3 4 5 DBREF 7DCI A 7 110 UNP Q03933 HSF2_HUMAN 7 110 DBREF 7DCI B 1 12 PDB 7DCI 7DCI 1 12 SEQADV 7DCI ASN A 86 UNP Q03933 ASP 86 ENGINEERED MUTATION SEQRES 1 A 104 VAL PRO ALA PHE LEU SER LYS LEU TRP THR LEU VAL GLU SEQRES 2 A 104 GLU THR HIS THR ASN GLU PHE ILE THR TRP SER GLN ASN SEQRES 3 A 104 GLY GLN SER PHE LEU VAL LEU ASP GLU GLN ARG PHE ALA SEQRES 4 A 104 LYS GLU ILE LEU PRO LYS TYR PHE LYS HIS ASN ASN MET SEQRES 5 A 104 ALA SER PHE VAL ARG GLN LEU ASN MET TYR GLY PHE ARG SEQRES 6 A 104 LYS VAL VAL HIS ILE ASP SER GLY ILE VAL LYS GLN GLU SEQRES 7 A 104 ARG ASN GLY PRO VAL GLU PHE GLN HIS PRO TYR PHE LYS SEQRES 8 A 104 GLN GLY GLN ASP ASP LEU LEU GLU ASN ILE LYS ARG LYS SEQRES 1 B 12 DG DG DG DA DA DT DA DT DT DC DC DC HET NA A 201 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *171(H2 O) HELIX 1 AA1 PRO A 8 GLU A 20 1 13 HELIX 2 AA2 THR A 21 ASN A 24 5 4 HELIX 3 AA3 ASP A 40 ILE A 48 1 9 HELIX 4 AA4 ILE A 48 PHE A 53 1 6 HELIX 5 AA5 ASN A 57 TYR A 68 1 12 HELIX 6 AA6 GLN A 100 ILE A 107 5 8 SHEET 1 AA1 4 ILE A 27 TRP A 29 0 SHEET 2 AA1 4 PHE A 36 VAL A 38 -1 O LEU A 37 N THR A 28 SHEET 3 AA1 4 VAL A 89 GLN A 92 -1 O VAL A 89 N VAL A 38 SHEET 4 AA1 4 ARG A 71 LYS A 72 -1 N ARG A 71 O GLN A 92 LINK O LEU A 17 NA NA A 201 1555 1555 2.74 LINK O VAL A 18 NA NA A 201 1555 1555 2.55 LINK O GLU A 20 NA NA A 201 1555 1555 2.38 LINK OG1 THR A 23 NA NA A 201 1555 1555 2.52 LINK OD1 ASN A 24 NA NA A 201 1555 1555 2.30 LINK O ILE A 27 NA NA A 201 1555 1555 2.47 CRYST1 92.268 38.472 38.654 90.00 100.74 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010838 0.000000 0.002056 0.00000 SCALE2 0.000000 0.025993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026332 0.00000