HEADER PROTEIN BINDING 30-OCT-20 7DDX TITLE CRYSTAL STRUCTURE OF KANK1 S1179F MUTANT IN COMPLEX WTIH EIF4A1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KN MOTIF AND ANKYRIN REPEAT DOMAINS 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: EUKARYOTIC INITIATION FACTOR 4A-I; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: EIF4A-I,ATP-DEPENDENT RNA HELICASE EIF4A-1; COMPND 10 EC: 3.6.4.13; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KANK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET32A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 GENE: EIF4A1, DDX2A, EIF4A; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET32A KEYWDS NEPHROTIC SYNDROME, KIDNEY ANKYRIN REPEAT-CONTAINING PROTEIN, KEYWDS 2 EUKARYOTIC INITIATION FACTOR, COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR W.PAN,Y.XU,Z.WEI REVDAT 2 29-NOV-23 7DDX 1 REMARK REVDAT 1 08-SEP-21 7DDX 0 JRNL AUTH Y.XU,C.GUO,W.PAN,C.ZHAO,Y.DING,X.XIE,Z.WEI,Y.SUN,C.YU JRNL TITL NEPHROTIC-SYNDROME-ASSOCIATED MUTATION OF KANK2 INDUCES JRNL TITL 2 PATHOLOGIC BINDING COMPETITION WITH PHYSIOLOGICAL INTERACTOR JRNL TITL 3 KIF21A. JRNL REF J.BIOL.CHEM. V. 297 00958 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34274317 JRNL DOI 10.1016/J.JBC.2021.100958 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6964 - 4.9950 0.99 2683 139 0.1680 0.1518 REMARK 3 2 4.9950 - 3.9669 1.00 2628 143 0.1574 0.2138 REMARK 3 3 3.9669 - 3.4661 1.00 2597 140 0.1884 0.2142 REMARK 3 4 3.4661 - 3.1494 1.00 2581 136 0.2030 0.2631 REMARK 3 5 3.1494 - 2.9239 1.00 2596 130 0.2271 0.2576 REMARK 3 6 2.9239 - 2.7516 1.00 2561 138 0.2324 0.2447 REMARK 3 7 2.7516 - 2.6138 1.00 2578 133 0.2595 0.3194 REMARK 3 8 2.6138 - 2.5001 0.99 2547 132 0.2919 0.3230 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3558 REMARK 3 ANGLE : 0.572 4825 REMARK 3 CHIRALITY : 0.023 562 REMARK 3 PLANARITY : 0.003 621 REMARK 3 DIHEDRAL : 11.342 1284 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1089 THROUGH 1107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2760 -68.8390 -13.0567 REMARK 3 T TENSOR REMARK 3 T11: 0.3852 T22: 0.7617 REMARK 3 T33: 0.5853 T12: -0.0303 REMARK 3 T13: -0.0034 T23: -0.0927 REMARK 3 L TENSOR REMARK 3 L11: 8.0238 L22: 7.0762 REMARK 3 L33: 7.0700 L12: -2.6731 REMARK 3 L13: 0.1556 L23: -1.1235 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.6941 S13: -0.7987 REMARK 3 S21: -0.2873 S22: -0.1004 S23: 0.9104 REMARK 3 S31: 0.0960 S32: -1.1682 S33: 0.1554 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1108 THROUGH 1206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1902 -64.0233 -10.7935 REMARK 3 T TENSOR REMARK 3 T11: 0.3720 T22: 0.6159 REMARK 3 T33: 0.4521 T12: -0.0106 REMARK 3 T13: 0.0571 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 4.9055 L22: 1.7650 REMARK 3 L33: 1.0493 L12: 0.0220 REMARK 3 L13: 0.0921 L23: -0.0667 REMARK 3 S TENSOR REMARK 3 S11: -0.0634 S12: 0.5113 S13: 0.0487 REMARK 3 S21: -0.1381 S22: 0.0042 S23: 0.1859 REMARK 3 S31: 0.0467 S32: -0.1317 S33: 0.0306 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1207 THROUGH 1334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8963 -61.6248 -8.3919 REMARK 3 T TENSOR REMARK 3 T11: 0.3998 T22: 0.5618 REMARK 3 T33: 0.3409 T12: -0.0340 REMARK 3 T13: 0.0430 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 6.3211 L22: 1.3859 REMARK 3 L33: 0.8746 L12: 1.2107 REMARK 3 L13: -1.3234 L23: -0.0527 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: -0.2706 S13: 0.1470 REMARK 3 S21: 0.0599 S22: -0.1461 S23: 0.0110 REMARK 3 S31: -0.0675 S32: 0.0930 S33: 0.0741 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4447 -35.1110 18.8464 REMARK 3 T TENSOR REMARK 3 T11: 0.7988 T22: 1.4896 REMARK 3 T33: 1.5441 T12: 0.1178 REMARK 3 T13: 0.0841 T23: -0.7395 REMARK 3 L TENSOR REMARK 3 L11: 3.6164 L22: 0.7928 REMARK 3 L33: 0.9920 L12: 1.1704 REMARK 3 L13: -0.7142 L23: -0.7319 REMARK 3 S TENSOR REMARK 3 S11: 0.1526 S12: -0.8463 S13: 1.1126 REMARK 3 S21: 0.5354 S22: -0.6930 S23: 1.5907 REMARK 3 S31: -0.7182 S32: -1.0364 S33: 0.2685 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6034 -51.1831 9.7517 REMARK 3 T TENSOR REMARK 3 T11: 0.4943 T22: 0.8338 REMARK 3 T33: 0.6651 T12: -0.1064 REMARK 3 T13: 0.1303 T23: -0.2115 REMARK 3 L TENSOR REMARK 3 L11: 2.2438 L22: 2.1750 REMARK 3 L33: 2.6202 L12: 1.5487 REMARK 3 L13: -0.2843 L23: 1.4570 REMARK 3 S TENSOR REMARK 3 S11: 0.1357 S12: -0.6744 S13: 0.1378 REMARK 3 S21: 0.4096 S22: -0.6141 S23: 0.5826 REMARK 3 S31: 0.1327 S32: -0.2970 S33: 0.4224 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 168 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3816 -37.8374 14.2920 REMARK 3 T TENSOR REMARK 3 T11: 0.5468 T22: 0.7590 REMARK 3 T33: 0.8044 T12: -0.0148 REMARK 3 T13: -0.0833 T23: -0.2524 REMARK 3 L TENSOR REMARK 3 L11: 4.3205 L22: 3.1856 REMARK 3 L33: 3.0384 L12: 1.0995 REMARK 3 L13: 0.3758 L23: 0.4240 REMARK 3 S TENSOR REMARK 3 S11: -0.2240 S12: -0.6758 S13: 0.7643 REMARK 3 S21: 0.1721 S22: -0.2675 S23: 0.7198 REMARK 3 S31: -0.3376 S32: -0.4055 S33: 0.5057 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300015600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21919 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YAZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M AMMONIUM SULFATE PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.18000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.36000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.36000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.18000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1505 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1082 REMARK 465 PRO A 1083 REMARK 465 GLY A 1084 REMARK 465 SER A 1085 REMARK 465 GLU A 1086 REMARK 465 PHE A 1087 REMARK 465 ARG A 1088 REMARK 465 SER A 1335 REMARK 465 LYS A 1336 REMARK 465 ALA A 1337 REMARK 465 GLN A 1338 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 GLN B 5 REMARK 465 ASP B 6 REMARK 465 SER B 7 REMARK 465 ARG B 8 REMARK 465 SER B 9 REMARK 465 ARG B 10 REMARK 465 ASP B 11 REMARK 465 ASN B 12 REMARK 465 GLY B 13 REMARK 465 PRO B 14 REMARK 465 ASP B 15 REMARK 465 GLY B 16 REMARK 465 MET B 17 REMARK 465 GLU B 18 REMARK 465 PRO B 19 REMARK 465 GLU B 20 REMARK 465 GLY B 21 REMARK 465 VAL B 22 REMARK 465 ILE B 23 REMARK 465 GLU B 24 REMARK 465 LYS B 237 REMARK 465 LYS B 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1090 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1112 CG CD CE NZ REMARK 470 LYS A1117 CG CD CE NZ REMARK 470 GLU A1217 CG CD OE1 OE2 REMARK 470 ARG B 45 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 LYS B 118 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1155 138.41 -171.12 REMARK 500 ASP A1167 -163.84 -79.67 REMARK 500 GLU B 53 -81.43 -121.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 DBREF 7DDX A 1088 1338 UNP E9Q238 E9Q238_MOUSE 1088 1338 DBREF 7DDX B 1 238 UNP P60843 IF4A1_MOUSE 1 238 SEQADV 7DDX GLY A 1082 UNP E9Q238 EXPRESSION TAG SEQADV 7DDX PRO A 1083 UNP E9Q238 EXPRESSION TAG SEQADV 7DDX GLY A 1084 UNP E9Q238 EXPRESSION TAG SEQADV 7DDX SER A 1085 UNP E9Q238 EXPRESSION TAG SEQADV 7DDX GLU A 1086 UNP E9Q238 EXPRESSION TAG SEQADV 7DDX PHE A 1087 UNP E9Q238 EXPRESSION TAG SEQADV 7DDX PHE A 1179 UNP E9Q238 SER 1179 ENGINEERED MUTATION SEQADV 7DDX GLY B -3 UNP P60843 EXPRESSION TAG SEQADV 7DDX PRO B -2 UNP P60843 EXPRESSION TAG SEQADV 7DDX GLY B -1 UNP P60843 EXPRESSION TAG SEQADV 7DDX SER B 0 UNP P60843 EXPRESSION TAG SEQRES 1 A 257 GLY PRO GLY SER GLU PHE ARG GLU ARG TYR GLU LEU SER SEQRES 2 A 257 GLU LYS MET LEU SER ALA CYS ASN LEU LEU LYS TYR ASN SEQRES 3 A 257 ILE LYS ASP PRO LYS ALA LEU ALA SER LYS ASP MET ARG SEQRES 4 A 257 ILE CYS LEU ASN THR LEU GLN HIS ASP TRP PHE ARG VAL SEQRES 5 A 257 SER SER GLN LYS SER ALA VAL PRO ALA MET VAL GLY ASP SEQRES 6 A 257 TYR ILE ALA ALA PHE GLU ALA VAL SER PRO ASP VAL LEU SEQRES 7 A 257 ARG TYR ILE ILE ASN MET ALA ASP GLY ASN GLY ASN THR SEQRES 8 A 257 ALA LEU HIS TYR SER VAL PHE HIS SER ASN PHE GLN ILE SEQRES 9 A 257 VAL LYS LEU LEU LEU ASP ALA ASP VAL CYS ASN VAL ASP SEQRES 10 A 257 HIS GLN ASN LYS ALA GLY TYR THR PRO ILE MET LEU ALA SEQRES 11 A 257 ALA LEU ALA ALA VAL GLU ALA GLU LYS ASP MET GLN VAL SEQRES 12 A 257 VAL GLU GLU LEU PHE SER CYS GLY ASP VAL ASN ALA LYS SEQRES 13 A 257 ALA SER GLN ALA GLY GLN THR ALA LEU MET LEU ALA VAL SEQRES 14 A 257 SER HIS GLY ARG ILE ASP MET VAL LYS GLY LEU LEU ALA SEQRES 15 A 257 CYS GLY ALA ASP VAL ASN ILE GLN ASP ASP GLU GLY SER SEQRES 16 A 257 THR ALA LEU MET CYS ALA SER GLU HIS GLY HIS VAL GLU SEQRES 17 A 257 ILE VAL LYS LEU LEU LEU ALA GLN PRO GLY CYS ASN GLY SEQRES 18 A 257 HIS LEU GLU ASP ASN ASP GLY SER THR ALA LEU SER ILE SEQRES 19 A 257 ALA LEU GLU ALA GLY HIS LYS ASP ILE ALA VAL LEU LEU SEQRES 20 A 257 TYR ALA HIS LEU ASN PHE SER LYS ALA GLN SEQRES 1 B 242 GLY PRO GLY SER MET SER ALA SER GLN ASP SER ARG SER SEQRES 2 B 242 ARG ASP ASN GLY PRO ASP GLY MET GLU PRO GLU GLY VAL SEQRES 3 B 242 ILE GLU SER ASN TRP ASN GLU ILE VAL ASP SER PHE ASP SEQRES 4 B 242 ASP MET ASN LEU SER GLU SER LEU LEU ARG GLY ILE TYR SEQRES 5 B 242 ALA TYR GLY PHE GLU LYS PRO SER ALA ILE GLN GLN ARG SEQRES 6 B 242 ALA ILE LEU PRO CYS ILE LYS GLY TYR ASP VAL ILE ALA SEQRES 7 B 242 GLN ALA GLN SER GLY THR GLY LYS THR ALA THR PHE ALA SEQRES 8 B 242 ILE SER ILE LEU GLN GLN ILE GLU LEU ASP LEU LYS ALA SEQRES 9 B 242 THR GLN ALA LEU VAL LEU ALA PRO THR ARG GLU LEU ALA SEQRES 10 B 242 GLN GLN ILE GLN LYS VAL VAL MET ALA LEU GLY ASP TYR SEQRES 11 B 242 MET GLY ALA SER CYS HIS ALA CYS ILE GLY GLY THR ASN SEQRES 12 B 242 VAL ARG ALA GLU VAL GLN LYS LEU GLN MET GLU ALA PRO SEQRES 13 B 242 HIS ILE ILE VAL GLY THR PRO GLY ARG VAL PHE ASP MET SEQRES 14 B 242 LEU ASN ARG ARG TYR LEU SER PRO LYS TYR ILE LYS MET SEQRES 15 B 242 PHE VAL LEU ASP GLU ALA ASP GLU MET LEU SER ARG GLY SEQRES 16 B 242 PHE LYS ASP GLN ILE TYR ASP ILE PHE GLN LYS LEU ASN SEQRES 17 B 242 SER ASN THR GLN VAL VAL LEU LEU SER ALA THR MET PRO SEQRES 18 B 242 SER ASP VAL LEU GLU VAL THR LYS LYS PHE MET ARG ASP SEQRES 19 B 242 PRO ILE ARG ILE LEU VAL LYS LYS HET SO4 A1401 5 HET SO4 A1402 5 HET GOL A1403 6 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 5(O4 S 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 9 HOH *13(H2 O) HELIX 1 AA1 SER A 1094 ILE A 1108 1 15 HELIX 2 AA2 ASP A 1110 ALA A 1115 1 6 HELIX 3 AA3 SER A 1116 SER A 1135 1 20 HELIX 4 AA4 VAL A 1140 SER A 1155 1 16 HELIX 5 AA5 SER A 1155 ASN A 1164 1 10 HELIX 6 AA6 THR A 1172 HIS A 1180 1 9 HELIX 7 AA7 ASN A 1182 ALA A 1192 1 11 HELIX 8 AA8 THR A 1206 LEU A 1213 1 8 HELIX 9 AA9 ALA A 1218 GLY A 1232 1 15 HELIX 10 AB1 THR A 1244 HIS A 1252 1 9 HELIX 11 AB2 ARG A 1254 CYS A 1264 1 11 HELIX 12 AB3 THR A 1277 GLY A 1286 1 10 HELIX 13 AB4 HIS A 1287 ALA A 1296 1 10 HELIX 14 AB5 THR A 1311 ALA A 1319 1 9 HELIX 15 AB6 HIS A 1321 ASN A 1333 1 13 HELIX 16 AB7 SER B 33 MET B 37 5 5 HELIX 17 AB8 SER B 40 GLY B 51 1 12 HELIX 18 AB9 SER B 56 LYS B 68 1 13 HELIX 19 AC1 GLY B 81 ILE B 94 1 14 HELIX 20 AC2 THR B 109 GLY B 124 1 16 HELIX 21 AC3 ASN B 139 GLU B 150 1 12 HELIX 22 AC4 THR B 158 ARG B 168 1 11 HELIX 23 AC5 GLU B 183 ARG B 190 1 8 HELIX 24 AC6 PHE B 192 LEU B 203 1 12 HELIX 25 AC7 PRO B 217 MET B 228 1 12 SHEET 1 AA1 7 CYS B 131 CYS B 134 0 SHEET 2 AA1 7 ILE B 154 GLY B 157 1 O ILE B 154 N HIS B 132 SHEET 3 AA1 7 ALA B 103 LEU B 106 1 N ALA B 103 O ILE B 155 SHEET 4 AA1 7 MET B 178 LEU B 181 1 O VAL B 180 N LEU B 104 SHEET 5 AA1 7 GLN B 208 LEU B 212 1 O LEU B 212 N LEU B 181 SHEET 6 AA1 7 VAL B 72 GLN B 75 1 N ALA B 74 O LEU B 211 SHEET 7 AA1 7 ILE B 232 LEU B 235 1 O ILE B 234 N GLN B 75 SITE 1 AC1 3 SER A1094 GLU A1095 LYS A1096 SITE 1 AC2 4 HIS A1321 LYS A1322 ASP A1323 ILE A1324 SITE 1 AC3 3 ARG A1254 ILE A1255 ASP A1256 SITE 1 AC4 3 LYS B 193 GLN B 201 LYS B 202 SITE 1 AC5 5 GLY B 79 THR B 80 GLY B 81 LYS B 82 SITE 2 AC5 5 THR B 83 SITE 1 AC6 5 ARG B 110 THR B 158 GLY B 160 ARG B 161 SITE 2 AC6 5 PHE B 192 CRYST1 137.628 137.628 57.540 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007266 0.004195 0.000000 0.00000 SCALE2 0.000000 0.008390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017379 0.00000