HEADER OXIDOREDUCTASE 02-NOV-20 7DE4 TITLE HYBRID CLUSTER PROTEIN (HCP) FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYLAMINE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYBRID-CLUSTER PROTEIN,HCP,PRISMANE PROTEIN; COMPND 5 EC: 1.7.99.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: HCP, YBJW, B0873, JW0857; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS HYBRID CLUSTER, IRON-SULFUR CLUSTER, METAL BINDING PROTEIN, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.FUJISHIRO,M.OOI,K.TAKAOKA,Y.TAKAHASHI REVDAT 3 29-NOV-23 7DE4 1 REMARK REVDAT 2 29-DEC-21 7DE4 1 JRNL LINK REVDAT 1 30-JUN-21 7DE4 0 JRNL AUTH T.FUJISHIRO,M.OOI,K.TAKAOKA JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI CLASS II HYBRID JRNL TITL 2 CLUSTER PROTEIN, HCP, REVEALS A [4FE-4S] CLUSTER AT THE JRNL TITL 3 N-TERMINAL PROTRUSION. JRNL REF FEBS J. V. 288 6752 2021 JRNL REFN ISSN 1742-464X JRNL PMID 34101368 JRNL DOI 10.1111/FEBS.16062 REMARK 2 REMARK 2 RESOLUTION. 3.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 13606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 717 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 976 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.4080 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.4630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 95.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 129.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : 1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.570 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.410 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 62.727 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4344 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5909 ; 3.378 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 549 ; 9.157 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;35.275 ;23.033 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 708 ;26.057 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;26.626 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 570 ; 0.196 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3265 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): -29.9808 -18.6734 -0.2851 REMARK 3 T TENSOR REMARK 3 T11: 0.2092 T22: 0.7585 REMARK 3 T33: 0.5709 T12: 0.1217 REMARK 3 T13: -0.0782 T23: -0.1339 REMARK 3 L TENSOR REMARK 3 L11: 9.1353 L22: 5.4658 REMARK 3 L33: 0.1458 L12: -7.0372 REMARK 3 L13: 0.3182 L23: -0.1877 REMARK 3 S TENSOR REMARK 3 S11: -0.2178 S12: -0.7795 S13: -0.5880 REMARK 3 S21: 0.1156 S22: 0.5111 S23: 0.3624 REMARK 3 S31: -0.0027 S32: 0.0384 S33: -0.2933 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): -23.3416 1.8041 -9.2945 REMARK 3 T TENSOR REMARK 3 T11: 0.1310 T22: 0.7352 REMARK 3 T33: 0.2988 T12: -0.0058 REMARK 3 T13: -0.0101 T23: -0.0776 REMARK 3 L TENSOR REMARK 3 L11: 1.2324 L22: 1.8715 REMARK 3 L33: 1.7128 L12: -0.1580 REMARK 3 L13: -1.2679 L23: 1.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: -0.4117 S13: 0.3444 REMARK 3 S21: -0.2048 S22: 0.4750 S23: -0.2452 REMARK 3 S31: -0.0814 S32: 0.6313 S33: -0.5046 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): -34.8196 1.3817 0.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.2973 T22: 0.5897 REMARK 3 T33: 0.3008 T12: -0.0477 REMARK 3 T13: -0.0128 T23: -0.1026 REMARK 3 L TENSOR REMARK 3 L11: 0.7102 L22: 2.2640 REMARK 3 L33: 0.2972 L12: -0.3967 REMARK 3 L13: -0.3485 L23: -0.2888 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: -0.2558 S13: 0.4525 REMARK 3 S21: 0.0240 S22: 0.2064 S23: -0.2116 REMARK 3 S31: 0.0236 S32: 0.1244 S33: -0.2431 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 226 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): -48.9851 -11.2881 -23.0882 REMARK 3 T TENSOR REMARK 3 T11: 0.4115 T22: 0.4232 REMARK 3 T33: 0.0378 T12: 0.0449 REMARK 3 T13: -0.0025 T23: 0.0520 REMARK 3 L TENSOR REMARK 3 L11: 2.6183 L22: 1.2022 REMARK 3 L33: 0.8421 L12: -0.1688 REMARK 3 L13: -0.2187 L23: 0.5380 REMARK 3 S TENSOR REMARK 3 S11: 0.1904 S12: 0.2626 S13: 0.0553 REMARK 3 S21: 0.0621 S22: -0.1990 S23: -0.1695 REMARK 3 S31: 0.0375 S32: -0.1019 S33: 0.0086 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 375 A 550 REMARK 3 ORIGIN FOR THE GROUP (A): -53.6344 -11.5284 3.9579 REMARK 3 T TENSOR REMARK 3 T11: 0.5502 T22: 0.3623 REMARK 3 T33: 0.0985 T12: 0.0715 REMARK 3 T13: 0.0517 T23: 0.1326 REMARK 3 L TENSOR REMARK 3 L11: 2.1026 L22: 0.3242 REMARK 3 L33: 1.1177 L12: -0.2800 REMARK 3 L13: -0.0303 L23: 0.2655 REMARK 3 S TENSOR REMARK 3 S11: -0.2235 S12: -0.0893 S13: 0.0738 REMARK 3 S21: 0.2458 S22: 0.0100 S23: 0.0030 REMARK 3 S31: 0.3067 S32: 0.0097 S33: 0.2135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7DE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14324 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.610 REMARK 200 RESOLUTION RANGE LOW (A) : 46.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 11.48 REMARK 200 R MERGE (I) : 0.15900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.98 REMARK 200 R MERGE FOR SHELL (I) : 0.97500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1W9M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M SODIUM FORMATE, 0.1M SODIUM REMARK 280 ACETATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.55000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 71.27000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 71.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.27500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 71.27000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 71.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.82500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 71.27000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.27000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.27500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 71.27000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.27000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.82500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 551 REMARK 465 GLU A 552 REMARK 465 HIS A 553 REMARK 465 HIS A 554 REMARK 465 HIS A 555 REMARK 465 HIS A 556 REMARK 465 HIS A 557 REMARK 465 HIS A 558 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 273 O1 FS2 A 602 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 117 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 HIS A 168 CB - CA - C ANGL. DEV. = 14.7 DEGREES REMARK 500 PRO A 231 N - CA - C ANGL. DEV. = -16.0 DEGREES REMARK 500 GLN A 298 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 ASN A 299 CB - CA - C ANGL. DEV. = -22.1 DEGREES REMARK 500 CYS A 317 CB - CA - C ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 347 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 GLN A 358 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP A 385 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 CYS A 433 CB - CA - C ANGL. DEV. = -15.4 DEGREES REMARK 500 CYS A 433 N - CA - CB ANGL. DEV. = 14.3 DEGREES REMARK 500 THR A 512 CB - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 4 13.94 -154.63 REMARK 500 ARG A 11 97.46 57.52 REMARK 500 ASN A 16 -77.57 -98.22 REMARK 500 SER A 19 -124.69 -113.16 REMARK 500 TYR A 20 -138.64 61.02 REMARK 500 GLU A 54 -65.15 -109.42 REMARK 500 ILE A 57 162.55 57.50 REMARK 500 ALA A 104 4.10 -62.05 REMARK 500 ALA A 109 -106.86 39.41 REMARK 500 LEU A 118 -136.02 50.00 REMARK 500 LEU A 120 71.09 33.52 REMARK 500 ASP A 124 161.06 118.25 REMARK 500 LEU A 125 125.08 66.36 REMARK 500 GLN A 129 -72.15 -76.91 REMARK 500 ARG A 130 69.95 -21.35 REMARK 500 ALA A 169 -68.19 -94.56 REMARK 500 THR A 192 109.27 -58.79 REMARK 500 PRO A 194 133.30 6.12 REMARK 500 ALA A 240 -125.72 60.30 REMARK 500 LEU A 283 -33.92 -139.84 REMARK 500 SER A 315 132.73 168.01 REMARK 500 ASN A 316 168.22 73.06 REMARK 500 CYS A 317 59.37 39.10 REMARK 500 ASP A 320 103.28 -38.39 REMARK 500 ALA A 325 62.09 39.24 REMARK 500 SER A 334 -112.75 58.26 REMARK 500 ARG A 393 24.48 -141.02 REMARK 500 GLU A 394 43.00 35.58 REMARK 500 LEU A 431 68.47 -171.58 REMARK 500 ALA A 432 -162.69 -177.30 REMARK 500 LEU A 475 30.81 -90.64 REMARK 500 CYS A 477 -144.55 -124.07 REMARK 500 PHE A 491 -32.07 -139.81 REMARK 500 ASN A 509 53.07 86.66 REMARK 500 ILE A 537 -99.11 -76.48 REMARK 500 THR A 538 80.97 45.20 REMARK 500 THR A 539 134.77 128.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 601 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 3 SG REMARK 620 2 SF4 A 601 S1 95.0 REMARK 620 3 SF4 A 601 S3 92.7 101.2 REMARK 620 4 SF4 A 601 S4 154.2 102.7 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 601 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 6 SG REMARK 620 2 SF4 A 601 S2 84.6 REMARK 620 3 SF4 A 601 S3 122.3 104.7 REMARK 620 4 SF4 A 601 S4 132.3 104.6 100.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 601 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 SF4 A 601 S1 108.5 REMARK 620 3 SF4 A 601 S2 108.8 105.1 REMARK 620 4 SF4 A 601 S3 129.4 99.3 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 601 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 25 SG REMARK 620 2 SF4 A 601 S1 124.8 REMARK 620 3 SF4 A 601 S2 117.0 105.1 REMARK 620 4 SF4 A 601 S4 100.0 102.8 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS2 A 602 FE7 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 249 NE2 REMARK 620 2 FS2 A 602 O9 106.9 REMARK 620 3 FS2 A 602 O1 126.8 75.2 REMARK 620 4 GLU A 273 OE2 102.7 139.4 64.9 REMARK 620 5 CYS A 458 SG 99.9 95.4 133.2 106.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS2 A 602 FE6 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 317 SG REMARK 620 2 FS2 A 602 FE5 138.0 REMARK 620 3 FS2 A 602 FE8 130.8 74.1 REMARK 620 4 FS2 A 602 S5 85.4 56.5 93.6 REMARK 620 5 FS2 A 602 S6 168.8 51.8 51.5 105.6 REMARK 620 6 FS2 A 602 O8 85.3 102.7 46.6 79.7 98.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS2 A 602 FE8 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CSS A 405 SD REMARK 620 2 FS2 A 602 FE6 102.0 REMARK 620 3 FS2 A 602 S6 73.1 51.7 REMARK 620 4 FS2 A 602 O8 122.2 45.5 97.2 REMARK 620 5 FS2 A 602 O9 134.0 123.3 140.7 89.2 REMARK 620 6 FS2 A 602 O1 132.4 82.1 73.3 94.7 67.6 REMARK 620 7 GLU A 492 OE2 69.7 127.7 141.4 93.8 76.0 142.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS2 A 602 FE5 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 433 SG REMARK 620 2 FS2 A 602 FE6 102.7 REMARK 620 3 FS2 A 602 S5 110.1 56.8 REMARK 620 4 FS2 A 602 S6 101.5 55.8 109.7 REMARK 620 5 FS2 A 602 O1 163.0 92.8 84.3 81.2 REMARK 620 N 1 2 3 4 DBREF 7DE4 A 1 550 UNP P75825 HCP_ECOLI 1 550 SEQADV 7DE4 LEU A 551 UNP P75825 EXPRESSION TAG SEQADV 7DE4 GLU A 552 UNP P75825 EXPRESSION TAG SEQADV 7DE4 HIS A 553 UNP P75825 EXPRESSION TAG SEQADV 7DE4 HIS A 554 UNP P75825 EXPRESSION TAG SEQADV 7DE4 HIS A 555 UNP P75825 EXPRESSION TAG SEQADV 7DE4 HIS A 556 UNP P75825 EXPRESSION TAG SEQADV 7DE4 HIS A 557 UNP P75825 EXPRESSION TAG SEQADV 7DE4 HIS A 558 UNP P75825 EXPRESSION TAG SEQRES 1 A 558 MET PHE CYS VAL GLN CYS GLU GLN THR ILE ARG THR PRO SEQRES 2 A 558 ALA GLY ASN GLY CYS SER TYR ALA GLN GLY MET CYS GLY SEQRES 3 A 558 LYS THR ALA GLU THR SER ASP LEU GLN ASP LEU LEU ILE SEQRES 4 A 558 ALA ALA LEU GLN GLY LEU SER ALA TRP ALA VAL LYS ALA SEQRES 5 A 558 ARG GLU TYR GLY ILE ILE ASN HIS ASP VAL ASP SER PHE SEQRES 6 A 558 ALA PRO ARG ALA PHE PHE SER THR LEU THR ASN VAL ASN SEQRES 7 A 558 PHE ASP SER PRO ARG ILE VAL GLY TYR ALA ARG GLU ALA SEQRES 8 A 558 ILE ALA LEU ARG GLU ALA LEU LYS ALA GLN CYS LEU ALA SEQRES 9 A 558 VAL ASP ALA ASN ALA ARG VAL ASP ASN PRO MET ALA ASP SEQRES 10 A 558 LEU GLN LEU VAL SER ASP ASP LEU GLY GLU LEU GLN ARG SEQRES 11 A 558 GLN ALA ALA GLU PHE THR PRO ASN LYS ASP LYS ALA ALA SEQRES 12 A 558 ILE GLY GLU ASN ILE LEU GLY LEU ARG LEU LEU CYS LEU SEQRES 13 A 558 TYR GLY LEU LYS GLY ALA ALA ALA TYR MET GLU HIS ALA SEQRES 14 A 558 HIS VAL LEU GLY GLN TYR ASP ASN ASP ILE TYR ALA GLN SEQRES 15 A 558 TYR HIS LYS ILE MET ALA TRP LEU GLY THR TRP PRO ALA SEQRES 16 A 558 ASP MET ASN ALA LEU LEU GLU CYS SER MET GLU ILE GLY SEQRES 17 A 558 GLN MET ASN PHE LYS VAL MET SER ILE LEU ASP ALA GLY SEQRES 18 A 558 GLU THR GLY LYS TYR GLY HIS PRO THR PRO THR GLN VAL SEQRES 19 A 558 ASN VAL LYS ALA THR ALA GLY LYS CYS ILE LEU ILE SER SEQRES 20 A 558 GLY HIS ASP LEU LYS ASP LEU TYR ASN LEU LEU GLU GLN SEQRES 21 A 558 THR GLU GLY THR GLY VAL ASN VAL TYR THR HIS GLY GLU SEQRES 22 A 558 MET LEU PRO ALA HIS GLY TYR PRO GLU LEU ARG LYS PHE SEQRES 23 A 558 LYS HIS LEU VAL GLY ASN TYR GLY SER GLY TRP GLN ASN SEQRES 24 A 558 GLN GLN VAL GLU PHE ALA ARG PHE PRO GLY PRO ILE VAL SEQRES 25 A 558 MET THR SER ASN CYS ILE ILE ASP PRO THR VAL GLY ALA SEQRES 26 A 558 TYR ASP ASP ARG ILE TRP THR ARG SER ILE VAL GLY TRP SEQRES 27 A 558 PRO GLY VAL ARG HIS LEU ASP GLY ASP ASP PHE SER ALA SEQRES 28 A 558 VAL ILE THR GLN ALA GLN GLN MET ALA GLY PHE PRO TYR SEQRES 29 A 558 SER GLU ILE PRO HIS LEU ILE THR VAL GLY PHE GLY ARG SEQRES 30 A 558 GLN THR LEU LEU GLY ALA ALA ASP THR LEU ILE ASP LEU SEQRES 31 A 558 VAL SER ARG GLU LYS LEU ARG HIS ILE PHE LEU LEU GLY SEQRES 32 A 558 GLY CSS ASP GLY ALA ARG GLY GLU ARG HIS TYR PHE THR SEQRES 33 A 558 ASP PHE ALA THR SER VAL PRO ASP ASP CYS LEU ILE LEU SEQRES 34 A 558 THR LEU ALA CYS GLY LYS TYR ARG PHE ASN LYS LEU GLU SEQRES 35 A 558 PHE GLY ASP ILE GLU GLY LEU PRO ARG LEU VAL ASP ALA SEQRES 36 A 558 GLY GLN CYS ASN ASP ALA TYR SER ALA ILE ILE LEU ALA SEQRES 37 A 558 VAL THR LEU ALA GLU LYS LEU GLY CYS GLY VAL ASN ASP SEQRES 38 A 558 LEU PRO LEU SER LEU VAL LEU SER TRP PHE GLU GLN LYS SEQRES 39 A 558 ALA ILE VAL ILE LEU LEU THR LEU LEU SER LEU GLY VAL SEQRES 40 A 558 LYS ASN ILE VAL THR GLY PRO THR ALA PRO GLY PHE LEU SEQRES 41 A 558 THR PRO ASP LEU LEU ALA VAL LEU ASN GLU LYS PHE GLY SEQRES 42 A 558 LEU ARG SER ILE THR THR VAL GLU GLU ASP MET LYS GLN SEQRES 43 A 558 LEU LEU SER ALA LEU GLU HIS HIS HIS HIS HIS HIS MODRES 7DE4 CSS A 405 CYS MODIFIED RESIDUE HET CSS A 405 7 HET SF4 A 601 8 HET FS2 A 602 9 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FS2 FE-S-O HYBRID CLUSTER FORMUL 1 CSS C3 H7 N O2 S2 FORMUL 2 SF4 FE4 S4 FORMUL 3 FS2 FE4 O3 S2 HELIX 1 AA1 THR A 28 VAL A 50 1 23 HELIX 2 AA2 ASN A 59 PHE A 71 1 13 HELIX 3 AA3 SER A 72 LEU A 74 5 3 HELIX 4 AA4 ASP A 80 ALA A 104 1 25 HELIX 5 AA5 VAL A 105 ALA A 109 5 5 HELIX 6 AA6 GLN A 131 THR A 136 5 6 HELIX 7 AA7 GLY A 145 VAL A 171 1 27 HELIX 8 AA8 ASP A 176 THR A 192 1 17 HELIX 9 AA9 ASP A 196 CYS A 203 1 8 HELIX 10 AB1 MET A 205 GLY A 227 1 23 HELIX 11 AB2 ASP A 250 THR A 261 1 12 HELIX 12 AB3 MET A 274 TYR A 280 5 7 HELIX 13 AB4 GLY A 296 GLN A 298 5 3 HELIX 14 AB5 ASN A 299 PHE A 304 1 6 HELIX 15 AB6 TYR A 326 ASP A 328 5 3 HELIX 16 AB7 PHE A 349 MET A 359 1 11 HELIX 17 AB8 GLY A 376 SER A 392 1 17 HELIX 18 AB9 ARG A 409 GLU A 411 5 3 HELIX 19 AC1 ARG A 412 SER A 421 1 10 HELIX 20 AC2 ALA A 432 PHE A 438 5 7 HELIX 21 AC3 GLN A 457 ASN A 459 5 3 HELIX 22 AC4 ASP A 460 LEU A 475 1 16 HELIX 23 AC5 GLU A 492 LEU A 505 1 14 HELIX 24 AC6 ASP A 523 PHE A 532 1 10 HELIX 25 AC7 THR A 539 SER A 549 1 11 SHEET 1 AA1 2 THR A 232 ASN A 235 0 SHEET 2 AA1 2 LEU A 370 VAL A 373 -1 O VAL A 373 N THR A 232 SHEET 1 AA2 5 LEU A 289 ASN A 292 0 SHEET 2 AA2 5 ASN A 267 HIS A 271 1 N VAL A 268 O VAL A 290 SHEET 3 AA2 5 CYS A 243 SER A 247 1 N ILE A 246 O TYR A 269 SHEET 4 AA2 5 ILE A 311 MET A 313 1 O VAL A 312 N LEU A 245 SHEET 5 AA2 5 ILE A 330 THR A 332 1 O TRP A 331 N MET A 313 SHEET 1 AA3 2 ILE A 399 GLY A 403 0 SHEET 2 AA3 2 LEU A 484 LEU A 488 1 O SER A 485 N LEU A 401 SHEET 1 AA4 2 ILE A 428 THR A 430 0 SHEET 2 AA4 2 LEU A 452 ASP A 454 1 O VAL A 453 N ILE A 428 SHEET 1 AA5 2 ASP A 445 ILE A 446 0 SHEET 2 AA5 2 LEU A 449 PRO A 450 -1 O LEU A 449 N ILE A 446 LINK C GLY A 404 N CSS A 405 1555 1555 1.33 LINK C CSS A 405 N ASP A 406 1555 1555 1.32 LINK SG CYS A 3 FE2 SF4 A 601 1555 1555 2.30 LINK SG CYS A 6 FE1 SF4 A 601 1555 1555 2.33 LINK SG CYS A 18 FE4 SF4 A 601 1555 1555 2.38 LINK SG CYS A 25 FE3 SF4 A 601 1555 1555 2.32 LINK NE2 HIS A 249 FE7 FS2 A 602 1555 1555 1.91 LINK OE2 GLU A 273 FE7 FS2 A 602 1555 1555 2.09 LINK SG CYS A 317 FE6 FS2 A 602 1555 1555 2.29 LINK SD CSS A 405 FE8 FS2 A 602 1555 1555 2.43 LINK SG CYS A 433 FE5 FS2 A 602 1555 1555 2.11 LINK SG CYS A 458 FE7 FS2 A 602 1555 1555 2.31 LINK OE2 GLU A 492 FE8 FS2 A 602 1555 1555 2.04 CISPEP 1 GLY A 513 PRO A 514 0 4.10 CRYST1 142.540 142.540 117.100 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007016 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008540 0.00000