HEADER SUGAR BINDING PROTEIN 03-NOV-20 7DED TITLE MEVO LECTIN COMPLEX WITH MANNOHEPTOSE (MAN7) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: D, E, A, B, C, G, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS VOLTAE (STRAIN ATCC BAA-1334 / SOURCE 3 A3); SOURCE 4 ORGANISM_TAXID: 456320; SOURCE 5 STRAIN: ATCC BAA-1334 / A3; SOURCE 6 GENE: MVOL_0737; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-PRISM I FOLD, MEVO LECTIN, HEPTAMER, RING SHAPE STRUCTURE, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.SIVAJI,A.SUROLIA,M.VIJAYAN REVDAT 3 29-NOV-23 7DED 1 REMARK REVDAT 2 06-OCT-21 7DED 1 JRNL REVDAT 1 21-APR-21 7DED 0 JRNL AUTH N.SIVAJI,N.HARISH,S.SINGH,A.SINGH,M.VIJAYAN,A.SUROLIA JRNL TITL MEVO LECTIN SPECIFICITY TOWARD HIGH-MANNOSE STRUCTURES WITH JRNL TITL 2 TERMINAL ALPHA MAN(1,2) ALPHA MAN RESIDUES AND ITS JRNL TITL 3 IMPLICATION TO INHIBITION OF THE ENTRY OF MYCOBACTERIUM JRNL TITL 4 TUBERCULOSIS INTO MACROPHAGES. JRNL REF GLYCOBIOLOGY V. 31 1046 2021 JRNL REFN ESSN 1460-2423 JRNL PMID 33822039 JRNL DOI 10.1093/GLYCOB/CWAB022 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.SIVAJI,K.SUGUNA,A.SUROLIA,M.VIJAYAN REMARK 1 TITL STRUCTURAL AND RELATED STUDIES ON MEVO LECTIN FROM REMARK 1 TITL 2 METHANOCOCCUS VOLTAE A3. THE FIRST THOROUGH CHARACTERISATION REMARK 1 TITL 3 OF AN ARCHEAL LECTIN AND ITS INTERACTIONS. REMARK 1 REF GLYCOBIOLOGY 2020 REMARK 1 REFN ESSN 1460-2423 REMARK 1 PMID 32651948 REMARK 1 DOI 10.1093/GLYCOB/CWAA063 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.V.ABHINAV,E.SAMUEL,M.VIJAYAN REMARK 1 TITL ARCHEAL LECTINS: AN IDENTIFICATION THROUGH A GENOMIC SEARCH. REMARK 1 REF PROTEINS V. 84 21 2016 REMARK 1 REFN ESSN 1097-0134 REMARK 1 PMID 26492087 REMARK 1 DOI 10.1002/PROT.24949 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 73482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.929 REMARK 3 FREE R VALUE TEST SET COUNT : 3622 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4746 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 REMARK 3 BIN FREE R VALUE SET COUNT : 220 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7427 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 273 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.49400 REMARK 3 B22 (A**2) : -1.49400 REMARK 3 B33 (A**2) : 2.98800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.897 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7831 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7224 ; 0.036 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10558 ; 1.689 ; 1.685 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16854 ; 2.405 ; 1.628 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 972 ; 8.597 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 317 ;33.082 ;24.606 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1305 ;14.750 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ; 9.407 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1136 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8471 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1514 ; 0.020 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1043 ; 0.175 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 74 ; 0.222 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3776 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3909 ; 2.355 ; 2.018 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3908 ; 2.355 ; 2.017 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4874 ; 3.837 ; 3.016 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4875 ; 3.837 ; 3.017 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3922 ; 2.542 ; 2.284 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3923 ; 2.542 ; 2.284 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5684 ; 3.972 ; 3.331 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5685 ; 3.972 ; 3.331 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7DED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : CU K REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 61.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : 0.39000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.60 REMARK 200 R MERGE FOR SHELL (I) : 0.81300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BSB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TACSIMATE PH 6.0, 0.1 M MES REMARK 280 MONOHYDRATE PH 6.0, 25 % (W/V) PEG 4000, MICROBATCH, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 84.17500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 84.17500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.48000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 84.17500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 84.17500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.48000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 84.17500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 84.17500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.48000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 84.17500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 84.17500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.48000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A, B, C, G, F, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP E 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 98 CG CD CE NZ REMARK 470 ASN E 6 CG OD1 ND2 REMARK 470 THR E 19 OG1 CG2 REMARK 470 GLU E 26 CG CD OE1 OE2 REMARK 470 SER E 27 OG REMARK 470 LYS E 144 CG CD CE NZ REMARK 470 ASP A 5 CG OD1 OD2 REMARK 470 ASP B 5 CG OD1 OD2 REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 ASP C 5 CG OD1 OD2 REMARK 470 SER C 27 OG REMARK 470 LYS C 64 CG CD CE NZ REMARK 470 ASP G 5 CG OD1 OD2 REMARK 470 GLU G 26 CG CD OE1 OE2 REMARK 470 SER G 27 OG REMARK 470 ASP G 91 CG OD1 OD2 REMARK 470 ASP F 5 CG OD1 OD2 REMARK 470 ARG F 93 CZ REMARK 470 LYS F 144 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER D 27 1.55 -68.60 REMARK 500 ASN D 54 112.36 -162.14 REMARK 500 ASP D 91 32.30 -97.80 REMARK 500 GLU D 114 -79.36 -141.94 REMARK 500 ASN E 54 111.72 -164.37 REMARK 500 ASP E 91 35.71 -98.07 REMARK 500 GLU E 114 -79.22 -141.68 REMARK 500 ASN A 6 44.00 -144.09 REMARK 500 ASN A 54 113.50 -164.50 REMARK 500 ASP A 91 32.52 -97.60 REMARK 500 GLU A 114 -78.60 -143.16 REMARK 500 ASN B 54 111.72 -164.52 REMARK 500 PRO B 63 50.60 -69.76 REMARK 500 ASP B 91 32.01 -97.35 REMARK 500 GLU B 114 -80.17 -143.54 REMARK 500 ASN C 54 111.61 -165.55 REMARK 500 ASP C 91 31.66 -96.83 REMARK 500 GLU C 114 -79.54 -143.85 REMARK 500 ASN G 54 112.23 -164.61 REMARK 500 ASP G 91 34.25 -97.57 REMARK 500 GLU G 114 -79.52 -141.47 REMARK 500 ASN F 54 112.46 -164.97 REMARK 500 ASP F 91 32.04 -93.60 REMARK 500 GLU F 114 -77.64 -142.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7BTH RELATED DB: PDB REMARK 900 RELATED ID: 7BSB RELATED DB: PDB REMARK 900 RELATED ID: 7BT9 RELATED DB: PDB REMARK 900 RELATED ID: 7BSM RELATED DB: PDB REMARK 900 RELATED ID: 7BSN RELATED DB: PDB REMARK 900 RELATED ID: 7BT8 RELATED DB: PDB REMARK 900 RELATED ID: 7BTL RELATED DB: PDB DBREF 7DED D 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 DBREF 7DED E 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 DBREF 7DED A 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 DBREF 7DED B 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 DBREF 7DED C 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 DBREF 7DED G 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 DBREF 7DED F 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 SEQRES 1 D 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 D 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 D 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 D 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 D 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 D 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 D 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 D 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 D 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 D 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 D 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS SEQRES 1 E 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 E 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 E 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 E 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 E 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 E 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 E 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 E 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 E 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 E 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 E 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS SEQRES 1 A 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 A 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 A 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 A 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 A 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 A 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 A 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 A 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 A 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 A 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 A 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS SEQRES 1 B 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 B 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 B 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 B 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 B 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 B 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 B 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 B 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 B 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 B 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 B 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS SEQRES 1 C 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 C 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 C 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 C 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 C 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 C 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 C 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 C 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 C 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 C 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 C 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS SEQRES 1 G 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 G 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 G 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 G 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 G 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 G 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 G 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 G 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 G 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 G 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 G 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS SEQRES 1 F 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 F 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 F 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 F 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 F 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 F 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 F 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 F 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 F 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 F 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 F 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS HET MAN H 1 12 HET MAN H 2 11 HET MAN H 3 11 HET MAN H 4 11 HET MAN H 5 11 HET MAN H 6 11 HET MAN I 1 12 HET MAN I 2 11 HET MAN I 3 11 HET MAN I 4 11 HET MAN I 5 11 HET MAN I 6 11 HET MAN J 1 12 HET MAN J 2 11 HET MAN J 3 11 HET MAN J 4 11 HET MAN J 5 11 HET MAN J 6 11 HET MAN E 301 12 HET EDO A 201 4 HET EDO B 201 4 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HET EDO B 206 4 HET EDO B 207 4 HET EDO C 301 4 HET EDO C 302 4 HET EDO G 301 4 HET EDO G 302 4 HET EDO F 201 4 HET EDO F 202 4 HET EDO F 203 4 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 8 MAN 19(C6 H12 O6) FORMUL 12 EDO 15(C2 H6 O2) FORMUL 27 HOH *127(H2 O) SHEET 1 AA1 3 ILE D 8 TYR D 9 0 SHEET 2 AA1 3 ILE D 135 PHE D 142 -1 O PHE D 142 N ILE D 8 SHEET 3 AA1 3 VAL D 13 GLY D 14 -1 N VAL D 13 O LEU D 138 SHEET 1 AA2 4 ILE D 8 TYR D 9 0 SHEET 2 AA2 4 ILE D 135 PHE D 142 -1 O PHE D 142 N ILE D 8 SHEET 3 AA2 4 LEU D 124 ALA D 131 -1 N ALA D 125 O ILE D 141 SHEET 4 AA2 4 THR D 19 MET D 24 -1 N THR D 19 O ALA D 131 SHEET 1 AA3 8 TYR D 58 GLY D 61 0 SHEET 2 AA3 8 LEU D 44 PHE D 51 -1 N VAL D 49 O TYR D 58 SHEET 3 AA3 8 ILE D 30 TRP D 37 -1 N ASN D 36 O HIS D 45 SHEET 4 AA3 8 HIS D 67 GLU D 72 -1 O VAL D 69 N PHE D 35 SHEET 5 AA3 8 SER C 115 THR C 118 1 O THR C 118 N ILE D 70 SHEET 6 AA3 8 ILE C 79 LYS C 87 -1 N TYR C 86 O SER C 115 SHEET 7 AA3 8 ARG C 93 THR C 101 -1 O ARG C 93 N LYS C 87 SHEET 8 AA3 8 SER C 106 GLY C 110 -1 O ALA C 109 N VAL C 97 SHEET 1 AA4 8 SER D 106 GLY D 110 0 SHEET 2 AA4 8 ARG D 93 THR D 101 -1 N VAL D 97 O ALA D 109 SHEET 3 AA4 8 ILE D 79 LYS D 87 -1 N GLY D 81 O THR D 100 SHEET 4 AA4 8 SER D 115 THR D 118 -1 O SER D 115 N TYR D 86 SHEET 5 AA4 8 HIS E 67 GLU E 72 1 O ILE E 70 N THR D 118 SHEET 6 AA4 8 ILE E 30 TRP E 37 -1 N PHE E 35 O VAL E 69 SHEET 7 AA4 8 LEU E 44 PHE E 51 -1 O HIS E 45 N ASN E 36 SHEET 8 AA4 8 ASN E 54 GLY E 61 -1 O TYR E 58 N VAL E 49 SHEET 1 AA5 3 TYR E 7 TYR E 9 0 SHEET 2 AA5 3 ILE E 135 LEU E 143 -1 O PHE E 142 N ILE E 8 SHEET 3 AA5 3 VAL E 13 GLY E 14 -1 N VAL E 13 O LEU E 138 SHEET 1 AA6 4 TYR E 7 TYR E 9 0 SHEET 2 AA6 4 ILE E 135 LEU E 143 -1 O PHE E 142 N ILE E 8 SHEET 3 AA6 4 LEU E 124 ALA E 131 -1 N ALA E 125 O ILE E 141 SHEET 4 AA6 4 THR E 19 PHE E 23 -1 N THR E 19 O ALA E 131 SHEET 1 AA7 8 SER E 106 GLY E 110 0 SHEET 2 AA7 8 ARG E 93 THR E 101 -1 N VAL E 97 O ALA E 109 SHEET 3 AA7 8 ILE E 79 LYS E 87 -1 N LYS E 87 O ARG E 93 SHEET 4 AA7 8 SER E 115 THR E 118 -1 O SER E 115 N TYR E 86 SHEET 5 AA7 8 HIS F 67 GLU F 72 1 O GLU F 72 N THR E 118 SHEET 6 AA7 8 ILE F 30 TRP F 37 -1 N PHE F 35 O VAL F 69 SHEET 7 AA7 8 LEU F 44 PHE F 51 -1 O HIS F 45 N ASN F 36 SHEET 8 AA7 8 ASN F 54 GLY F 61 -1 O TYR F 58 N VAL F 49 SHEET 1 AA8 3 TYR A 7 TYR A 9 0 SHEET 2 AA8 3 ILE A 135 LEU A 143 -1 O PHE A 142 N ILE A 8 SHEET 3 AA8 3 VAL A 13 GLY A 14 -1 N VAL A 13 O LEU A 138 SHEET 1 AA9 4 TYR A 7 TYR A 9 0 SHEET 2 AA9 4 ILE A 135 LEU A 143 -1 O PHE A 142 N ILE A 8 SHEET 3 AA9 4 LEU A 124 ALA A 131 -1 N ALA A 125 O ILE A 141 SHEET 4 AA9 4 THR A 19 PHE A 23 -1 N THR A 19 O ALA A 131 SHEET 1 AB1 8 ASN A 54 GLY A 61 0 SHEET 2 AB1 8 LEU A 44 PHE A 51 -1 N VAL A 49 O TYR A 58 SHEET 3 AB1 8 ILE A 30 TRP A 37 -1 N ASN A 36 O HIS A 45 SHEET 4 AB1 8 HIS A 67 GLU A 72 -1 O VAL A 69 N PHE A 35 SHEET 5 AB1 8 SER G 115 THR G 118 1 O THR G 118 N GLU A 72 SHEET 6 AB1 8 ILE G 79 LYS G 87 -1 N TYR G 86 O SER G 115 SHEET 7 AB1 8 ARG G 93 THR G 101 -1 O GLY G 96 N GLY G 85 SHEET 8 AB1 8 SER G 106 GLY G 110 -1 O ALA G 109 N VAL G 97 SHEET 1 AB2 8 SER A 106 GLY A 110 0 SHEET 2 AB2 8 ARG A 93 THR A 101 -1 N VAL A 97 O ALA A 109 SHEET 3 AB2 8 ILE A 79 LYS A 87 -1 N LYS A 87 O ARG A 93 SHEET 4 AB2 8 SER A 115 THR A 118 -1 O SER A 115 N TYR A 86 SHEET 5 AB2 8 HIS B 67 GLU B 72 1 O ILE B 70 N THR A 118 SHEET 6 AB2 8 ILE B 30 TRP B 37 -1 N PHE B 35 O VAL B 69 SHEET 7 AB2 8 LEU B 44 PHE B 51 -1 O HIS B 45 N ASN B 36 SHEET 8 AB2 8 ASN B 54 GLY B 61 -1 O TYR B 58 N VAL B 49 SHEET 1 AB3 3 TYR B 7 TYR B 9 0 SHEET 2 AB3 3 ILE B 135 LEU B 143 -1 O PHE B 142 N ILE B 8 SHEET 3 AB3 3 VAL B 13 GLY B 14 -1 N VAL B 13 O LEU B 138 SHEET 1 AB4 4 TYR B 7 TYR B 9 0 SHEET 2 AB4 4 ILE B 135 LEU B 143 -1 O PHE B 142 N ILE B 8 SHEET 3 AB4 4 LEU B 124 ALA B 131 -1 N ALA B 125 O ILE B 141 SHEET 4 AB4 4 THR B 19 PHE B 23 -1 N THR B 19 O ALA B 131 SHEET 1 AB5 8 SER B 106 GLY B 110 0 SHEET 2 AB5 8 ARG B 93 THR B 101 -1 N VAL B 97 O ALA B 109 SHEET 3 AB5 8 ILE B 79 LYS B 87 -1 N LYS B 87 O ARG B 93 SHEET 4 AB5 8 SER B 115 THR B 118 -1 O SER B 115 N TYR B 86 SHEET 5 AB5 8 HIS C 67 GLU C 72 1 O ILE C 70 N THR B 118 SHEET 6 AB5 8 ILE C 30 TRP C 37 -1 N PHE C 35 O VAL C 69 SHEET 7 AB5 8 LEU C 44 PHE C 51 -1 O HIS C 45 N ASN C 36 SHEET 8 AB5 8 ASN C 54 GLY C 61 -1 O TYR C 58 N VAL C 49 SHEET 1 AB6 3 TYR C 7 TYR C 9 0 SHEET 2 AB6 3 ILE C 135 LEU C 143 -1 O PHE C 142 N ILE C 8 SHEET 3 AB6 3 VAL C 13 GLY C 14 -1 N VAL C 13 O LEU C 138 SHEET 1 AB7 4 TYR C 7 TYR C 9 0 SHEET 2 AB7 4 ILE C 135 LEU C 143 -1 O PHE C 142 N ILE C 8 SHEET 3 AB7 4 LEU C 124 ALA C 131 -1 N ALA C 125 O ILE C 141 SHEET 4 AB7 4 THR C 19 PHE C 23 -1 N THR C 19 O ALA C 131 SHEET 1 AB8 3 TYR G 7 TYR G 9 0 SHEET 2 AB8 3 ILE G 135 LEU G 143 -1 O PHE G 142 N ILE G 8 SHEET 3 AB8 3 VAL G 13 GLY G 14 -1 N VAL G 13 O LEU G 138 SHEET 1 AB9 4 TYR G 7 TYR G 9 0 SHEET 2 AB9 4 ILE G 135 LEU G 143 -1 O PHE G 142 N ILE G 8 SHEET 3 AB9 4 LEU G 124 ALA G 131 -1 N ALA G 125 O ILE G 141 SHEET 4 AB9 4 THR G 19 PHE G 23 -1 N THR G 19 O ALA G 131 SHEET 1 AC1 8 ASN G 54 GLY G 61 0 SHEET 2 AC1 8 LEU G 44 PHE G 51 -1 N VAL G 49 O TYR G 58 SHEET 3 AC1 8 ILE G 30 TRP G 37 -1 N ASN G 36 O HIS G 45 SHEET 4 AC1 8 HIS G 67 GLU G 72 -1 O VAL G 69 N PHE G 35 SHEET 5 AC1 8 SER F 115 THR F 118 1 O THR F 118 N ILE G 70 SHEET 6 AC1 8 ILE F 79 LYS F 87 -1 N TYR F 86 O SER F 115 SHEET 7 AC1 8 ARG F 93 THR F 101 -1 O GLY F 96 N GLY F 85 SHEET 8 AC1 8 SER F 106 GLY F 110 -1 O ALA F 109 N VAL F 97 SHEET 1 AC2 3 TYR F 7 TYR F 9 0 SHEET 2 AC2 3 ILE F 135 LEU F 143 -1 O PHE F 142 N ILE F 8 SHEET 3 AC2 3 VAL F 13 GLY F 14 -1 N VAL F 13 O LEU F 138 SHEET 1 AC3 4 TYR F 7 TYR F 9 0 SHEET 2 AC3 4 ILE F 135 LEU F 143 -1 O PHE F 142 N ILE F 8 SHEET 3 AC3 4 LEU F 124 ALA F 131 -1 N ALA F 125 O ILE F 141 SHEET 4 AC3 4 THR F 19 PHE F 23 -1 N THR F 19 O ALA F 131 LINK O3 MAN H 1 C1 MAN H 2 1555 1555 1.44 LINK O6 MAN H 1 C1 MAN H 5 1555 1555 1.44 LINK O2 MAN H 2 C1 MAN H 3 1555 1555 1.44 LINK O2 MAN H 3 C1 MAN H 4 1555 1555 1.44 LINK O3 MAN H 5 C1 MAN H 6 1555 1555 1.44 LINK O3 MAN I 1 C1 MAN I 2 1555 1555 1.44 LINK O6 MAN I 1 C1 MAN I 5 1555 1555 1.44 LINK O2 MAN I 2 C1 MAN I 3 1555 1555 1.44 LINK O2 MAN I 3 C1 MAN I 4 1555 1555 1.44 LINK O3 MAN I 5 C1 MAN I 6 1555 1555 1.44 LINK O3 MAN J 1 C1 MAN J 2 1555 1555 1.43 LINK O6 MAN J 1 C1 MAN J 5 1555 1555 1.44 LINK O2 MAN J 2 C1 MAN J 3 1555 1555 1.44 LINK O2 MAN J 3 C1 MAN J 4 1555 1555 1.44 LINK O3 MAN J 5 C1 MAN J 6 1555 1555 1.44 CRYST1 168.350 168.350 104.960 90.00 90.00 90.00 P 42 21 2 56 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005940 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009527 0.00000