HEADER CARBOHYDRATE 06-NOV-20 7DF6 TITLE MOUSE GALECTIN-3 CRD IN COMPLEX WITH NOVEL TETRAHYDROPYRAN-BASED TITLE 2 THIODISACCHARIDE MIMIC INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CARBOHYDRATE RECOGNITION DOMAIN (CRD); COMPND 5 SYNONYM: GAL-3,35 KDA LECTIN,CARBOHYDRATE-BINDING PROTEIN 35,CBP 35, COMPND 6 GALACTOSE-SPECIFIC LECTIN 3,IGE-BINDING PROTEIN,L-34 GALACTOSIDE- COMPND 7 BINDING LECTIN,LAMININ-BINDING PROTEIN,LECTIN L-29,MAC-2 ANTIGEN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LGALS3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GALECTIN-3 CARBOHYDRATE RECOGNITION DOMAIN, INHIBITOR, COMPLEX, KEYWDS 2 TETRAHYDROPYRAN, THIODIGALACTOSIDE, CARBOHYDRATE EXPDTA X-RAY DIFFRACTION AUTHOR K.GHOSH,A.KUMAR REVDAT 2 29-NOV-23 7DF6 1 REMARK REVDAT 1 23-JUN-21 7DF6 0 JRNL AUTH L.XU,R.A.HARTZ,B.R.BENO,K.GHOSH,J.K.SHUKLA,A.KUMAR,D.PATEL, JRNL AUTH 2 N.KALIDINDI,N.LEMOS,S.S.GAUTAM,A.KUMAR,B.A.ELLSWORTH,D.SHAH, JRNL AUTH 3 H.SALE,D.CHENG,A.REGUEIRO-REN JRNL TITL SYNTHESIS, STRUCTURE-ACTIVITY RELATIONSHIPS, AND IN VIVO JRNL TITL 2 EVALUATION OF NOVEL TETRAHYDROPYRAN-BASED THIODISACCHARIDE JRNL TITL 3 MIMICS AS GALECTIN-3 INHIBITORS. JRNL REF J.MED.CHEM. V. 64 6634 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33988358 JRNL DOI 10.1021/ACS.JMEDCHEM.0C02001 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1339 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1778 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.359 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.964 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2363 ; 0.016 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2149 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3217 ; 1.969 ; 1.701 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4987 ; 0.665 ; 1.593 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 7.293 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;35.420 ;21.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;14.134 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ; 8.732 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2863 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 498 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4512 ; 5.551 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7DF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 22.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.20200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7CXB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS (PH 7.5-8.5), 0.4M NASCN, 28 REMARK 280 -35% PEG 4000/6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.07000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.03000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.03000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.07000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 100 REMARK 465 GLY A 101 REMARK 465 SER A 102 REMARK 465 SER A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 SER A 110 REMARK 465 SER A 111 REMARK 465 GLY A 112 REMARK 465 GLU A 113 REMARK 465 THR A 114 REMARK 465 VAL A 115 REMARK 465 ARG A 116 REMARK 465 PHE A 117 REMARK 465 GLN A 118 REMARK 465 GLY A 119 REMARK 465 HIS A 120 REMARK 465 MET A 121 REMARK 465 GLY A 122 REMARK 465 VAL A 123 REMARK 465 PRO A 124 REMARK 465 ALA A 125 REMARK 465 MET B 100 REMARK 465 GLY B 101 REMARK 465 SER B 102 REMARK 465 SER B 103 REMARK 465 HIS B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 SER B 110 REMARK 465 SER B 111 REMARK 465 GLY B 112 REMARK 465 GLU B 113 REMARK 465 THR B 114 REMARK 465 VAL B 115 REMARK 465 ARG B 116 REMARK 465 PHE B 117 REMARK 465 GLN B 118 REMARK 465 GLY B 119 REMARK 465 HIS B 120 REMARK 465 MET B 121 REMARK 465 GLY B 122 REMARK 465 VAL B 123 REMARK 465 PRO B 124 REMARK 465 ALA B 125 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 178 CG OD1 ND2 REMARK 470 GLU A 207 CD OE1 OE2 REMARK 470 GLU A 219 CD OE1 OE2 REMARK 470 LYS A 224 CD CE NZ REMARK 470 ASN B 178 CG OD1 ND2 REMARK 470 ARG B 182 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 162 HD1 HIS A 172 1.55 REMARK 500 OD1 ASP B 162 HD1 HIS B 172 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 143 -2.92 95.32 REMARK 500 ASN A 155 50.59 -115.85 REMARK 500 ARG B 143 0.35 91.97 REMARK 500 ASN B 178 72.75 -150.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H5O A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H5O B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7DF5 RELATED DB: PDB REMARK 900 THESE TWO ENTRIES ARE RELATED. BOTH WITH THE SAME COMPOUND AND REMARK 900 PROTEIN BUT PROTEIN FROM DIFFERENT SPECIES. DBREF 7DF6 A 122 264 UNP P16110 LEG3_MOUSE 122 264 DBREF 7DF6 B 122 264 UNP P16110 LEG3_MOUSE 122 264 SEQADV 7DF6 MET A 100 UNP P16110 INITIATING METHIONINE SEQADV 7DF6 GLY A 101 UNP P16110 EXPRESSION TAG SEQADV 7DF6 SER A 102 UNP P16110 EXPRESSION TAG SEQADV 7DF6 SER A 103 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS A 104 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS A 105 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS A 106 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS A 107 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS A 108 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS A 109 UNP P16110 EXPRESSION TAG SEQADV 7DF6 SER A 110 UNP P16110 EXPRESSION TAG SEQADV 7DF6 SER A 111 UNP P16110 EXPRESSION TAG SEQADV 7DF6 GLY A 112 UNP P16110 EXPRESSION TAG SEQADV 7DF6 GLU A 113 UNP P16110 EXPRESSION TAG SEQADV 7DF6 THR A 114 UNP P16110 EXPRESSION TAG SEQADV 7DF6 VAL A 115 UNP P16110 EXPRESSION TAG SEQADV 7DF6 ARG A 116 UNP P16110 EXPRESSION TAG SEQADV 7DF6 PHE A 117 UNP P16110 EXPRESSION TAG SEQADV 7DF6 GLN A 118 UNP P16110 EXPRESSION TAG SEQADV 7DF6 GLY A 119 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS A 120 UNP P16110 EXPRESSION TAG SEQADV 7DF6 MET A 121 UNP P16110 EXPRESSION TAG SEQADV 7DF6 MET B 100 UNP P16110 INITIATING METHIONINE SEQADV 7DF6 GLY B 101 UNP P16110 EXPRESSION TAG SEQADV 7DF6 SER B 102 UNP P16110 EXPRESSION TAG SEQADV 7DF6 SER B 103 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS B 104 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS B 105 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS B 106 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS B 107 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS B 108 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS B 109 UNP P16110 EXPRESSION TAG SEQADV 7DF6 SER B 110 UNP P16110 EXPRESSION TAG SEQADV 7DF6 SER B 111 UNP P16110 EXPRESSION TAG SEQADV 7DF6 GLY B 112 UNP P16110 EXPRESSION TAG SEQADV 7DF6 GLU B 113 UNP P16110 EXPRESSION TAG SEQADV 7DF6 THR B 114 UNP P16110 EXPRESSION TAG SEQADV 7DF6 VAL B 115 UNP P16110 EXPRESSION TAG SEQADV 7DF6 ARG B 116 UNP P16110 EXPRESSION TAG SEQADV 7DF6 PHE B 117 UNP P16110 EXPRESSION TAG SEQADV 7DF6 GLN B 118 UNP P16110 EXPRESSION TAG SEQADV 7DF6 GLY B 119 UNP P16110 EXPRESSION TAG SEQADV 7DF6 HIS B 120 UNP P16110 EXPRESSION TAG SEQADV 7DF6 MET B 121 UNP P16110 EXPRESSION TAG SEQRES 1 A 165 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 165 GLU THR VAL ARG PHE GLN GLY HIS MET GLY VAL PRO ALA SEQRES 3 A 165 GLY PRO LEU THR VAL PRO TYR ASP LEU PRO LEU PRO GLY SEQRES 4 A 165 GLY VAL MET PRO ARG MET LEU ILE THR ILE MET GLY THR SEQRES 5 A 165 VAL LYS PRO ASN ALA ASN ARG ILE VAL LEU ASP PHE ARG SEQRES 6 A 165 ARG GLY ASN ASP VAL ALA PHE HIS PHE ASN PRO ARG PHE SEQRES 7 A 165 ASN GLU ASN ASN ARG ARG VAL ILE VAL CYS ASN THR LYS SEQRES 8 A 165 GLN ASP ASN ASN TRP GLY LYS GLU GLU ARG GLN SER ALA SEQRES 9 A 165 PHE PRO PHE GLU SER GLY LYS PRO PHE LYS ILE GLN VAL SEQRES 10 A 165 LEU VAL GLU ALA ASP HIS PHE LYS VAL ALA VAL ASN ASP SEQRES 11 A 165 ALA HIS LEU LEU GLN TYR ASN HIS ARG MET LYS ASN LEU SEQRES 12 A 165 ARG GLU ILE SER GLN LEU GLY ILE SER GLY ASP ILE THR SEQRES 13 A 165 LEU THR SER ALA ASN HIS ALA MET ILE SEQRES 1 B 165 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 165 GLU THR VAL ARG PHE GLN GLY HIS MET GLY VAL PRO ALA SEQRES 3 B 165 GLY PRO LEU THR VAL PRO TYR ASP LEU PRO LEU PRO GLY SEQRES 4 B 165 GLY VAL MET PRO ARG MET LEU ILE THR ILE MET GLY THR SEQRES 5 B 165 VAL LYS PRO ASN ALA ASN ARG ILE VAL LEU ASP PHE ARG SEQRES 6 B 165 ARG GLY ASN ASP VAL ALA PHE HIS PHE ASN PRO ARG PHE SEQRES 7 B 165 ASN GLU ASN ASN ARG ARG VAL ILE VAL CYS ASN THR LYS SEQRES 8 B 165 GLN ASP ASN ASN TRP GLY LYS GLU GLU ARG GLN SER ALA SEQRES 9 B 165 PHE PRO PHE GLU SER GLY LYS PRO PHE LYS ILE GLN VAL SEQRES 10 B 165 LEU VAL GLU ALA ASP HIS PHE LYS VAL ALA VAL ASN ASP SEQRES 11 B 165 ALA HIS LEU LEU GLN TYR ASN HIS ARG MET LYS ASN LEU SEQRES 12 B 165 ARG GLU ILE SER GLN LEU GLY ILE SER GLY ASP ILE THR SEQRES 13 B 165 LEU THR SER ALA ASN HIS ALA MET ILE HET H5O A 301 71 HET H5O B 301 71 HETNAM H5O (2R,3R,4S,5R,6S)-2-(HYDROXYMETHYL)-5-METHOXY-6-[(3R,4R, HETNAM 2 H5O 5S)-4-OXIDANYL-5-(4-PYRIMIDIN-5-YL-1,2,3-TRIAZOL-1- HETNAM 3 H5O YL)OXAN-3-YL]SULFANYL-4-[4-[3,4,5-TRIS(FLUORANYL) HETNAM 4 H5O PHENYL]-1,2,3-TRIAZOL-1-YL]OXAN-3-OL FORMUL 3 H5O 2(C26 H27 F3 N8 O6 S) FORMUL 5 HOH *179(H2 O) HELIX 1 AA1 ASN A 241 ILE A 245 5 5 HELIX 2 AA2 ASN B 241 ILE B 245 5 5 SHEET 1 AA1 6 TYR A 132 PRO A 135 0 SHEET 2 AA1 6 GLN A 247 GLY A 252 -1 O LEU A 248 N LEU A 134 SHEET 3 AA1 6 ILE A 159 ARG A 165 -1 N ARG A 164 O GLN A 247 SHEET 4 AA1 6 ASP A 168 GLU A 179 -1 O PHE A 171 N PHE A 163 SHEET 5 AA1 6 ARG A 182 GLN A 191 -1 O ARG A 182 N GLU A 179 SHEET 6 AA1 6 ASN A 194 TRP A 195 -1 O ASN A 194 N GLN A 191 SHEET 1 AA2 6 TYR A 132 PRO A 135 0 SHEET 2 AA2 6 GLN A 247 GLY A 252 -1 O LEU A 248 N LEU A 134 SHEET 3 AA2 6 ILE A 159 ARG A 165 -1 N ARG A 164 O GLN A 247 SHEET 4 AA2 6 ASP A 168 GLU A 179 -1 O PHE A 171 N PHE A 163 SHEET 5 AA2 6 ARG A 182 GLN A 191 -1 O ARG A 182 N GLU A 179 SHEET 6 AA2 6 GLU A 199 GLN A 201 -1 O GLU A 199 N CYS A 187 SHEET 1 AA3 5 ALA A 230 ASN A 236 0 SHEET 2 AA3 5 HIS A 222 VAL A 227 -1 N VAL A 225 O LEU A 232 SHEET 3 AA3 5 PRO A 211 VAL A 218 -1 N LEU A 217 O LYS A 224 SHEET 4 AA3 5 MET A 144 VAL A 152 -1 N MET A 144 O VAL A 218 SHEET 5 AA3 5 ILE A 254 MET A 263 -1 O ALA A 262 N LEU A 145 SHEET 1 AA4 6 TYR B 132 PRO B 135 0 SHEET 2 AA4 6 GLN B 247 GLY B 252 -1 O LEU B 248 N LEU B 134 SHEET 3 AA4 6 ILE B 159 ARG B 165 -1 N ARG B 164 O GLN B 247 SHEET 4 AA4 6 ASP B 168 GLU B 179 -1 O PHE B 171 N PHE B 163 SHEET 5 AA4 6 ARG B 182 GLN B 191 -1 O ARG B 182 N GLU B 179 SHEET 6 AA4 6 ASN B 194 TRP B 195 -1 O ASN B 194 N GLN B 191 SHEET 1 AA5 6 TYR B 132 PRO B 135 0 SHEET 2 AA5 6 GLN B 247 GLY B 252 -1 O LEU B 248 N LEU B 134 SHEET 3 AA5 6 ILE B 159 ARG B 165 -1 N ARG B 164 O GLN B 247 SHEET 4 AA5 6 ASP B 168 GLU B 179 -1 O PHE B 171 N PHE B 163 SHEET 5 AA5 6 ARG B 182 GLN B 191 -1 O ARG B 182 N GLU B 179 SHEET 6 AA5 6 GLU B 199 GLN B 201 -1 O GLU B 199 N CYS B 187 SHEET 1 AA6 5 ALA B 230 ASN B 236 0 SHEET 2 AA6 5 HIS B 222 VAL B 227 -1 N VAL B 225 O LEU B 232 SHEET 3 AA6 5 PRO B 211 VAL B 218 -1 N LEU B 217 O LYS B 224 SHEET 4 AA6 5 MET B 144 VAL B 152 -1 N ILE B 148 O ILE B 214 SHEET 5 AA6 5 ILE B 254 MET B 263 -1 O ALA B 262 N LEU B 145 CISPEP 1 VAL A 130 PRO A 131 0 -0.18 CISPEP 2 VAL B 130 PRO B 131 0 -1.55 SITE 1 AC1 14 ARG A 158 HIS A 172 ASN A 174 ARG A 176 SITE 2 AC1 14 ASN A 180 ASN A 188 GLU A 198 ARG A 200 SITE 3 AC1 14 SER A 251 HOH A 425 HOH A 450 ARG B 158 SITE 4 AC1 14 LYS B 197 H5O B 301 SITE 1 AC2 16 ARG A 158 LYS A 197 H5O A 301 ARG B 158 SITE 2 AC2 16 HIS B 172 ASN B 174 ARG B 176 GLU B 179 SITE 3 AC2 16 ASN B 180 ASN B 188 TRP B 195 GLU B 198 SITE 4 AC2 16 ARG B 200 SER B 251 HOH B 409 HOH B 450 CRYST1 36.140 58.140 130.060 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007689 0.00000