HEADER DNA 10-NOV-20 7DFY TITLE NOVEL MOTIF FOR LEFT-HANDED G-QUADRUPLEX FORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2XMOTIF2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DNA (26-MER); COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: DNA MOTIF FOR LEFT-HANDED G-QUADRUPLEX FORMATION SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS LEFT-HANDED, G-QUADRUPLEX, BULGE, FOUR-LAYER, DNA EXPDTA X-RAY DIFFRACTION AUTHOR P.DAS,F.R.WINNERDY,A.MAITY,Y.MECHULAM,A.T.PHAN REVDAT 2 29-NOV-23 7DFY 1 REMARK REVDAT 1 01-SEP-21 7DFY 0 JRNL AUTH P.DAS,F.R.WINNERDY,A.MAITY,Y.MECHULAM,A.T.PHAN JRNL TITL A NOVEL MINIMAL MOTIF FOR LEFT-HANDED G-QUADRUPLEX JRNL TITL 2 FORMATION. JRNL REF CHEM.COMMUN.(CAMB.) V. 57 2527 2021 JRNL REFN ESSN 1364-548X JRNL PMID 33690751 JRNL DOI 10.1039/D0CC08146A REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 57.7 REMARK 3 NUMBER OF REFLECTIONS : 8994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 76.9900 - 2.4400 1.00 4990 274 0.1820 0.2405 REMARK 3 2 2.4400 - 1.9400 0.61 2985 142 0.2415 0.3077 REMARK 3 3 1.9300 - 1.6900 0.12 582 21 0.2968 0.3988 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1:26) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9459 -7.6160 8.6295 REMARK 3 T TENSOR REMARK 3 T11: 0.0571 T22: 0.0380 REMARK 3 T33: 0.0686 T12: 0.0029 REMARK 3 T13: 0.0161 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.7367 L22: 0.7307 REMARK 3 L33: 0.4873 L12: -0.0794 REMARK 3 L13: 0.0536 L23: 0.0878 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: -0.1394 S13: 0.1647 REMARK 3 S21: 0.0208 S22: -0.0306 S23: -0.0160 REMARK 3 S31: -0.0369 S32: -0.0216 S33: 0.0186 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 1:26) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8751 -16.6183 25.9104 REMARK 3 T TENSOR REMARK 3 T11: 0.3075 T22: 0.4094 REMARK 3 T33: 0.1433 T12: -0.0098 REMARK 3 T13: -0.0461 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 0.7887 L22: 1.2534 REMARK 3 L33: 1.4526 L12: 0.1986 REMARK 3 L13: 0.6792 L23: 0.2249 REMARK 3 S TENSOR REMARK 3 S11: 0.1498 S12: -0.6329 S13: -0.1942 REMARK 3 S21: 0.6692 S22: 0.0215 S23: -0.1377 REMARK 3 S31: 0.2303 S32: 0.1827 S33: -0.1008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DFY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9010 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 76.995 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.18900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 40.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 1.21200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 6GZ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M STRONTIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.04 M SODIUM CACODYLATE TRIHYDRATE PH=6.0, 35% V/V (+/-)-2- REMARK 280 METHYL-2,4-PENTANEDIOL (MPD), 0.012 M SPERMINE TETRAHYDROCHORIDE, REMARK 280 PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.80050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B 9 O3' DT B 9 C3' -0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 26 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 2 O6 80.5 REMARK 620 3 DG A 4 O6 58.2 96.3 REMARK 620 4 DG A 5 O6 128.3 71.5 82.3 REMARK 620 5 DG A 7 O6 98.0 157.6 65.0 93.0 REMARK 620 6 DG A 8 O6 162.2 106.2 135.1 69.4 82.0 REMARK 620 7 DG A 10 O6 73.4 132.2 102.6 153.8 67.0 90.4 REMARK 620 8 DG A 12 O6 97.2 65.4 152.6 108.6 136.5 71.7 78.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 4 O6 65.6 REMARK 620 3 DG A 7 O6 102.5 75.9 REMARK 620 4 DG A 10 O6 67.3 105.9 62.8 REMARK 620 5 HOH A 252 O 146.8 81.2 69.0 127.1 REMARK 620 6 HOH A 254 O 159.8 127.3 70.1 93.0 49.6 REMARK 620 7 DT B 25 O2 82.9 145.1 128.0 72.9 128.3 87.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 O6 REMARK 620 2 DG A 5 O6 69.2 REMARK 620 3 DG A 8 O6 101.8 63.4 REMARK 620 4 DG A 12 O6 65.8 102.1 68.2 REMARK 620 5 DG A 16 O6 152.8 135.4 85.2 93.5 REMARK 620 6 DG A 19 O6 141.3 86.3 92.7 151.7 63.2 REMARK 620 7 DG A 22 O6 84.3 95.3 152.8 136.5 101.5 68.0 REMARK 620 8 DG A 26 O6 88.5 153.5 138.4 80.3 69.9 104.2 67.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 113 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 3 O2 REMARK 620 2 HOH A 230 O 65.4 REMARK 620 3 DT B 13 OP2 80.5 139.3 REMARK 620 4 DG B 26 OP2 75.7 97.2 95.0 REMARK 620 5 HOH B 206 O 141.4 148.2 72.3 79.9 REMARK 620 6 HOH B 208 O 122.7 71.8 148.8 73.7 77.0 REMARK 620 7 HOH B 212 O 78.6 74.1 78.2 154.2 120.3 123.7 REMARK 620 8 HOH B 215 O 141.5 88.7 106.9 138.5 74.1 69.2 66.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 114 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 3 OP2 REMARK 620 2 HOH A 223 O 66.1 REMARK 620 3 DT B 13 O2 65.0 80.2 REMARK 620 4 HOH B 203 O 122.6 82.0 63.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 108 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 11 O2 REMARK 620 2 HOH A 245 O 79.4 REMARK 620 3 HOH A 259 O 86.7 93.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 112 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 14 OP1 REMARK 620 2 HOH A 217 O 77.7 REMARK 620 3 HOH A 234 O 80.9 73.6 REMARK 620 4 HOH A 238 O 79.6 141.9 72.8 REMARK 620 5 HOH A 246 O 138.4 69.7 65.9 111.3 REMARK 620 6 HOH A 253 O 74.6 111.1 153.1 91.7 141.1 REMARK 620 7 HOH B 201 O 148.7 133.2 109.4 75.8 69.9 87.0 REMARK 620 8 HOH B 205 O 121.9 70.3 130.3 147.5 70.3 73.7 74.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 15 O6 REMARK 620 2 DG A 16 O6 82.6 REMARK 620 3 DG A 18 O6 63.3 94.2 REMARK 620 4 DG A 19 O6 131.1 69.6 79.0 REMARK 620 5 DG A 21 O6 95.4 155.4 63.6 94.4 REMARK 620 6 DG A 22 O6 156.3 111.2 131.3 72.7 79.8 REMARK 620 7 DG A 24 O6 67.8 131.8 104.4 156.9 68.0 89.0 REMARK 620 8 DG A 26 O6 99.1 73.3 160.1 109.6 131.0 68.5 74.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 105 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 15 O6 REMARK 620 2 DG A 18 O6 63.8 REMARK 620 3 DG A 21 O6 101.4 63.9 REMARK 620 4 DG A 24 O6 64.0 92.5 64.4 REMARK 620 5 HOH A 263 O 143.6 118.7 112.0 144.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 109 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 20 O2 REMARK 620 2 DT A 25 O4 102.8 REMARK 620 3 HOH A 201 O 75.2 120.9 REMARK 620 4 HOH A 236 O 63.3 39.7 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 109 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 20 O2 REMARK 620 2 DT A 25 O4 96.9 REMARK 620 3 HOH A 257 O 78.9 75.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 107 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 224 O REMARK 620 2 HOH A 239 O 81.9 REMARK 620 3 HOH A 240 O 154.1 85.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 111 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 203 O REMARK 620 2 HOH A 205 O 85.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 1 O6 REMARK 620 2 DG B 2 O6 85.5 REMARK 620 3 DG B 4 O6 71.0 96.7 REMARK 620 4 DG B 5 O6 138.7 65.8 83.0 REMARK 620 5 DG B 7 O6 101.7 163.4 72.1 100.0 REMARK 620 6 DG B 8 O6 157.3 102.5 127.9 62.6 76.5 REMARK 620 7 DG B 10 O6 69.6 131.1 112.7 151.6 65.5 89.6 REMARK 620 8 DG B 12 O6 94.2 62.2 155.7 97.4 131.1 71.8 77.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 106 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 1 O5' REMARK 620 2 DG B 12 N3 105.2 REMARK 620 3 DG B 26 O4' 114.8 92.9 REMARK 620 4 HOH B 206 O 133.4 108.8 94.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 2 O6 REMARK 620 2 DG B 5 O6 69.7 REMARK 620 3 DG B 8 O6 106.7 62.1 REMARK 620 4 DG B 12 O6 67.2 101.7 72.3 REMARK 620 5 DG B 16 O6 149.1 138.1 84.2 89.9 REMARK 620 6 DG B 19 O6 143.0 86.9 85.5 148.2 64.9 REMARK 620 7 DG B 22 O6 81.2 94.5 148.9 136.1 104.6 72.2 REMARK 620 8 DG B 26 O6 85.6 152.3 140.8 79.1 69.2 107.2 68.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 105 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 12 OP2 REMARK 620 2 DT B 14 OP1 70.1 REMARK 620 3 DG B 15 OP1 85.8 82.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 15 O6 REMARK 620 2 DG B 16 O6 82.4 REMARK 620 3 DG B 18 O6 68.0 96.6 REMARK 620 4 DG B 19 O6 135.0 69.1 81.1 REMARK 620 5 DG B 21 O6 95.5 168.9 72.5 105.8 REMARK 620 6 DG B 22 O6 147.3 107.6 138.0 76.5 80.0 REMARK 620 7 DG B 24 O6 63.6 126.5 106.1 160.4 61.0 86.5 REMARK 620 8 DG B 26 O6 89.9 67.9 155.0 109.3 123.2 66.9 71.8 REMARK 620 N 1 2 3 4 5 6 7 DBREF 7DFY A 1 26 PDB 7DFY 7DFY 1 26 DBREF 7DFY B 1 26 PDB 7DFY 7DFY 1 26 SEQRES 1 A 26 DG DG DT DG DG DT DG DG DT DG DT DG DT SEQRES 2 A 26 DT DG DG DT DG DG DT DG DG DT DG DT DG SEQRES 1 B 26 DG DG DT DG DG DT DG DG DT DG DT DG DT SEQRES 2 B 26 DT DG DG DT DG DG DT DG DG DT DG DT DG HET K A 101 1 HET K A 102 1 HET K A 103 1 HET K A 104 1 HET K A 105 1 HET K A 106 1 HET SR A 107 1 HET SR A 108 1 HET SR A 109 2 HET SR A 110 1 HET SR A 111 1 HET SR A 112 1 HET SR A 113 1 HET SR A 114 1 HET MPD A 115 8 HET K B 101 1 HET K B 102 1 HET K B 103 1 HET K B 104 1 HET K B 105 1 HET SR B 106 1 HETNAM K POTASSIUM ION HETNAM SR STRONTIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 K 11(K 1+) FORMUL 9 SR 9(SR 2+) FORMUL 17 MPD C6 H14 O2 FORMUL 24 HOH *80(H2 O) LINK O6 DG A 1 K K A 101 1555 1555 2.88 LINK O6 DG A 1 K K A 104 1555 1555 2.86 LINK O6 DG A 2 K K A 101 1555 1555 2.90 LINK O6 DG A 2 K K A 103 1555 1555 2.84 LINK O2 DT A 3 SR SR A 113 1555 1555 2.55 LINK OP2 DT A 3 SR SR A 114 1555 1555 2.74 LINK O6 DG A 4 K K A 101 1555 1555 3.22 LINK O6 DG A 4 K K A 104 1555 1555 2.63 LINK O6 DG A 5 K K A 101 1555 1555 2.74 LINK O6 DG A 5 K K A 103 1555 1555 2.96 LINK O6 DG A 7 K K A 101 1555 1555 2.87 LINK O6 DG A 7 K K A 104 1555 1555 2.71 LINK O6 DG A 8 K K A 101 1555 1555 2.66 LINK O6 DG A 8 K K A 103 1555 1555 2.89 LINK O6 DG A 10 K K A 101 1555 1555 2.72 LINK O6 DG A 10 K K A 104 1555 1555 3.18 LINK O2 DT A 11 SR SR A 108 1555 1555 2.75 LINK O6 DG A 12 K K A 101 1555 1555 2.86 LINK O6 DG A 12 K K A 103 1555 1555 2.89 LINK OP1 DT A 14 SR SR A 112 1555 1555 2.43 LINK O6 DG A 15 K K A 102 1555 1555 3.01 LINK O6 DG A 15 K K A 105 1555 1555 2.85 LINK O6 DG A 16 K K A 102 1555 1555 2.67 LINK O6 DG A 16 K K A 103 1555 1555 2.93 LINK O6 DG A 18 K K A 102 1555 1555 3.01 LINK O6 DG A 18 K K A 105 1555 1555 3.11 LINK O6 DG A 19 K K A 102 1555 1555 2.75 LINK O6 DG A 19 K K A 103 1555 1555 2.98 LINK O2 DT A 20 SR A SR A 109 1555 1555 2.77 LINK O2 DT A 20 SR B SR A 109 1555 1555 2.65 LINK O6 DG A 21 K K A 102 1555 1555 3.21 LINK O6 DG A 21 K K A 105 1555 1555 3.09 LINK O6 DG A 22 K K A 102 1555 1555 2.81 LINK O6 DG A 22 K K A 103 1555 1555 2.91 LINK OP1 DG A 22 K K A 106 1555 1555 2.68 LINK O6 DG A 24 K K A 102 1555 1555 2.78 LINK O6 DG A 24 K K A 105 1555 1555 3.23 LINK O4 DT A 25 SR A SR A 109 1555 2545 2.58 LINK O4 DT A 25 SR B SR A 109 1555 2545 2.74 LINK O6 DG A 26 K K A 102 1555 1555 2.84 LINK O6 DG A 26 K K A 103 1555 1555 2.82 LINK K K A 104 O HOH A 252 1555 1555 3.01 LINK K K A 104 O HOH A 254 1555 1555 2.98 LINK K K A 104 O2 DT B 25 1555 1555 2.57 LINK K K A 105 O HOH A 263 1555 1555 2.54 LINK SR SR A 107 O HOH A 224 1555 1555 2.88 LINK SR SR A 107 O HOH A 239 1555 1555 2.70 LINK SR SR A 107 O HOH A 240 1555 1555 2.48 LINK SR SR A 108 O HOH A 245 1555 1555 2.68 LINK SR SR A 108 O HOH A 259 1555 1555 2.71 LINK SR A SR A 109 O HOH A 201 1555 2555 2.79 LINK SR A SR A 109 O HOH A 236 1555 1555 2.58 LINK SR B SR A 109 O HOH A 257 1555 1555 2.79 LINK SR SR A 110 O HOH A 206 1555 1555 2.35 LINK SR SR A 111 O HOH A 203 1555 1555 2.95 LINK SR SR A 111 O HOH A 205 1555 1555 2.61 LINK SR SR A 112 O HOH A 217 1555 1455 2.44 LINK SR SR A 112 O HOH A 234 1555 1555 2.35 LINK SR SR A 112 O HOH A 238 1555 1555 2.57 LINK SR SR A 112 O HOH A 246 1555 1455 2.44 LINK SR SR A 112 O HOH A 253 1555 1555 2.74 LINK SR SR A 112 O HOH B 201 1555 1455 2.45 LINK SR SR A 112 O HOH B 205 1555 1455 2.55 LINK SR SR A 113 O HOH A 230 1555 1555 2.57 LINK SR SR A 113 OP2 DT B 13 1555 1555 2.54 LINK SR SR A 113 OP2 DG B 26 1555 1555 2.51 LINK SR SR A 113 O HOH B 206 1555 1555 2.68 LINK SR SR A 113 O HOH B 208 1555 1555 2.60 LINK SR SR A 113 O HOH B 212 1555 1555 2.70 LINK SR SR A 113 O HOH B 215 1555 1555 2.50 LINK SR SR A 114 O HOH A 223 1555 1555 2.58 LINK SR SR A 114 O2 DT B 13 1555 1555 2.57 LINK SR SR A 114 O HOH B 203 1555 1555 2.50 LINK O6 DG B 1 K K B 101 1555 1555 2.89 LINK O5' DG B 1 SR SR B 106 1555 1555 2.61 LINK O6 DG B 2 K K B 101 1555 1555 3.01 LINK O6 DG B 2 K K B 103 1555 1555 2.76 LINK O6 DG B 4 K K B 101 1555 1555 2.78 LINK O6 DG B 5 K K B 101 1555 1555 2.86 LINK O6 DG B 5 K K B 103 1555 1555 2.82 LINK O6 DG B 7 K K B 101 1555 1555 2.79 LINK O6 DG B 8 K K B 101 1555 1555 2.98 LINK O6 DG B 8 K K B 103 1555 1555 3.05 LINK O6 DG B 10 K K B 101 1555 1555 2.77 LINK O6 DG B 12 K K B 101 1555 1555 2.80 LINK O6 DG B 12 K K B 103 1555 1555 2.67 LINK OP2 DG B 12 K K B 105 1555 1555 2.52 LINK N3 DG B 12 SR SR B 106 1555 1555 2.94 LINK OP1 DT B 14 K K B 105 1555 1555 2.58 LINK O6 DG B 15 K K B 102 1555 1555 3.12 LINK OP1 DG B 15 K K B 105 1555 1555 2.50 LINK O6 DG B 16 K K B 102 1555 1555 2.77 LINK O6 DG B 16 K K B 103 1555 1555 2.84 LINK O6 DG B 18 K K B 102 1555 1555 2.88 LINK O6 DG B 19 K K B 102 1555 1555 2.68 LINK O6 DG B 19 K K B 103 1555 1555 2.92 LINK O6 DG B 21 K K B 102 1555 1555 2.84 LINK O6 DG B 22 K K B 102 1555 1555 2.81 LINK O6 DG B 22 K K B 103 1555 1555 2.85 LINK O6 DG B 24 K K B 102 1555 1555 3.02 LINK O6 DG B 26 K K B 102 1555 1555 3.05 LINK O6 DG B 26 K K B 103 1555 1555 2.89 LINK O4' DG B 26 SR SR B 106 1555 1555 2.93 LINK SR SR B 106 O HOH B 206 1555 1555 2.77 CRYST1 28.405 31.601 77.764 90.00 98.07 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035205 0.000000 0.004990 0.00000 SCALE2 0.000000 0.031645 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012988 0.00000