HEADER STRUCTURAL PROTEIN/INHIBITOR 10-NOV-20 7DFZ
TITLE CRYO_EM STRUCTURE OF DELTA N-NPC1L1-EZE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NPC1-LIKE INTRACELLULAR CHOLESTEROL TRANSPORTER 1;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: NPC1L1;
SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606;
SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293
KEYWDS EZETIMIBE, STRUCTURAL PROTEIN-INHIBITOR COMPLEX
EXPDTA ELECTRON MICROSCOPY
AUTHOR M.HU,S.SUN
REVDAT 2 30-OCT-24 7DFZ 1 REMARK
REVDAT 1 11-AUG-21 7DFZ 0
JRNL AUTH M.HU,F.YANG,Y.HUANG,X.YOU,D.LIU,S.SUN,S.F.SUI
JRNL TITL STRUCTURAL INSIGHTS INTO THE MECHANISM OF HUMAN
JRNL TITL 2 NPC1L1-MEDIATED CHOLESTEROL UPTAKE.
JRNL REF SCI ADV V. 7 2021
JRNL REFN ESSN 2375-2548
JRNL PMID 34272236
JRNL DOI 10.1126/SCIADV.ABG3188
REMARK 2
REMARK 2 RESOLUTION. 3.58 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 SOFTWARE PACKAGES : NULL
REMARK 3 RECONSTRUCTION SCHEMA : NULL
REMARK 3
REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT
REMARK 3 PDB ENTRY : NULL
REMARK 3 REFINEMENT SPACE : NULL
REMARK 3 REFINEMENT PROTOCOL : NULL
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL
REMARK 3
REMARK 3 FITTING PROCEDURE : NULL
REMARK 3
REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS
REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL
REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL
REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.580
REMARK 3 NUMBER OF PARTICLES : 220412
REMARK 3 CTF CORRECTION METHOD : NONE
REMARK 3
REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL
REMARK 3
REMARK 3 OTHER DETAILS: NULL
REMARK 4
REMARK 4 7DFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-20.
REMARK 100 THE DEPOSITION ID IS D_1300019317.
REMARK 245
REMARK 245 EXPERIMENTAL DETAILS
REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE
REMARK 245 SPECIMEN TYPE : NULL
REMARK 245
REMARK 245 ELECTRON MICROSCOPE SAMPLE
REMARK 245 SAMPLE TYPE : PARTICLE
REMARK 245 PARTICLE TYPE : POINT
REMARK 245 NAME OF SAMPLE : DELTA N-HNPC1L1-EZE
REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL
REMARK 245 SAMPLE SUPPORT DETAILS : NULL
REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL
REMARK 245 SAMPLE BUFFER : NULL
REMARK 245 PH : 7.40
REMARK 245 SAMPLE DETAILS : NULL
REMARK 245
REMARK 245 DATA ACQUISITION
REMARK 245 DATE OF EXPERIMENT : NULL
REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL
REMARK 245 TEMPERATURE (KELVIN) : NULL
REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS
REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K)
REMARK 245 MINIMUM DEFOCUS (NM) : NULL
REMARK 245 MAXIMUM DEFOCUS (NM) : NULL
REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL
REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL
REMARK 245 NOMINAL CS : NULL
REMARK 245 IMAGING MODE : OTHER
REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00
REMARK 245 ILLUMINATION MODE : OTHER
REMARK 245 NOMINAL MAGNIFICATION : NULL
REMARK 245 CALIBRATED MAGNIFICATION : NULL
REMARK 245 SOURCE : FIELD EMISSION GUN
REMARK 245 ACCELERATION VOLTAGE (KV) : 300
REMARK 245 IMAGING DETAILS : NULL
REMARK 247
REMARK 247 ELECTRON MICROSCOPY
REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON
REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE
REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES
REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION
REMARK 247 OF THE STRUCTURE FACTORS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, H, J, P, T
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 GLU A 3
REMARK 465 ALA A 4
REMARK 465 GLY A 5
REMARK 465 LEU A 6
REMARK 465 ARG A 7
REMARK 465 GLY A 8
REMARK 465 TRP A 9
REMARK 465 LEU A 10
REMARK 465 LEU A 11
REMARK 465 TRP A 12
REMARK 465 ALA A 13
REMARK 465 LEU A 14
REMARK 465 LEU A 15
REMARK 465 LEU A 16
REMARK 465 ARG A 17
REMARK 465 LEU A 18
REMARK 465 ALA A 19
REMARK 465 GLN A 20
REMARK 465 SER A 21
REMARK 465 GLU A 22
REMARK 465 PRO A 23
REMARK 465 TYR A 24
REMARK 465 THR A 25
REMARK 465 THR A 26
REMARK 465 ILE A 27
REMARK 465 HIS A 28
REMARK 465 GLN A 29
REMARK 465 PRO A 30
REMARK 465 GLY A 31
REMARK 465 TYR A 32
REMARK 465 CYS A 33
REMARK 465 ALA A 34
REMARK 465 PHE A 35
REMARK 465 TYR A 36
REMARK 465 ASP A 37
REMARK 465 GLU A 38
REMARK 465 CYS A 39
REMARK 465 GLY A 40
REMARK 465 LYS A 41
REMARK 465 ASN A 42
REMARK 465 PRO A 43
REMARK 465 GLU A 44
REMARK 465 LEU A 45
REMARK 465 SER A 46
REMARK 465 GLY A 47
REMARK 465 SER A 48
REMARK 465 LEU A 49
REMARK 465 MET A 50
REMARK 465 THR A 51
REMARK 465 LEU A 52
REMARK 465 SER A 53
REMARK 465 ASN A 54
REMARK 465 VAL A 55
REMARK 465 SER A 56
REMARK 465 CYS A 57
REMARK 465 LEU A 58
REMARK 465 SER A 59
REMARK 465 ASN A 60
REMARK 465 THR A 61
REMARK 465 PRO A 62
REMARK 465 ALA A 63
REMARK 465 ARG A 64
REMARK 465 LYS A 65
REMARK 465 ILE A 66
REMARK 465 THR A 67
REMARK 465 GLY A 68
REMARK 465 ASP A 69
REMARK 465 HIS A 70
REMARK 465 LEU A 71
REMARK 465 ILE A 72
REMARK 465 LEU A 73
REMARK 465 LEU A 74
REMARK 465 GLN A 75
REMARK 465 LYS A 76
REMARK 465 ILE A 77
REMARK 465 CYS A 78
REMARK 465 PRO A 79
REMARK 465 ARG A 80
REMARK 465 LEU A 81
REMARK 465 TYR A 82
REMARK 465 THR A 83
REMARK 465 GLY A 84
REMARK 465 PRO A 85
REMARK 465 ASN A 86
REMARK 465 THR A 87
REMARK 465 GLN A 88
REMARK 465 ALA A 89
REMARK 465 CYS A 90
REMARK 465 CYS A 91
REMARK 465 SER A 92
REMARK 465 ALA A 93
REMARK 465 LYS A 94
REMARK 465 GLN A 95
REMARK 465 LEU A 96
REMARK 465 VAL A 97
REMARK 465 SER A 98
REMARK 465 LEU A 99
REMARK 465 GLU A 100
REMARK 465 ALA A 101
REMARK 465 SER A 102
REMARK 465 LEU A 103
REMARK 465 SER A 104
REMARK 465 ILE A 105
REMARK 465 THR A 106
REMARK 465 LYS A 107
REMARK 465 ALA A 108
REMARK 465 LEU A 109
REMARK 465 LEU A 110
REMARK 465 THR A 111
REMARK 465 ARG A 112
REMARK 465 CYS A 113
REMARK 465 PRO A 114
REMARK 465 ALA A 115
REMARK 465 CYS A 116
REMARK 465 SER A 117
REMARK 465 ASP A 118
REMARK 465 ASN A 119
REMARK 465 PHE A 120
REMARK 465 VAL A 121
REMARK 465 ASN A 122
REMARK 465 LEU A 123
REMARK 465 HIS A 124
REMARK 465 CYS A 125
REMARK 465 HIS A 126
REMARK 465 ASN A 127
REMARK 465 THR A 128
REMARK 465 CYS A 129
REMARK 465 SER A 130
REMARK 465 PRO A 131
REMARK 465 ASN A 132
REMARK 465 GLN A 133
REMARK 465 SER A 134
REMARK 465 LEU A 135
REMARK 465 PHE A 136
REMARK 465 ILE A 137
REMARK 465 ASN A 138
REMARK 465 VAL A 139
REMARK 465 THR A 140
REMARK 465 ARG A 141
REMARK 465 VAL A 142
REMARK 465 ALA A 143
REMARK 465 GLN A 144
REMARK 465 LEU A 145
REMARK 465 GLY A 146
REMARK 465 ALA A 147
REMARK 465 GLY A 148
REMARK 465 GLN A 149
REMARK 465 LEU A 150
REMARK 465 PRO A 151
REMARK 465 ALA A 152
REMARK 465 VAL A 153
REMARK 465 VAL A 154
REMARK 465 ALA A 155
REMARK 465 TYR A 156
REMARK 465 GLU A 157
REMARK 465 ALA A 158
REMARK 465 PHE A 159
REMARK 465 TYR A 160
REMARK 465 GLN A 161
REMARK 465 HIS A 162
REMARK 465 SER A 163
REMARK 465 PHE A 164
REMARK 465 ALA A 165
REMARK 465 GLU A 166
REMARK 465 GLN A 167
REMARK 465 SER A 168
REMARK 465 TYR A 169
REMARK 465 ASP A 170
REMARK 465 SER A 171
REMARK 465 CYS A 172
REMARK 465 SER A 173
REMARK 465 ARG A 174
REMARK 465 VAL A 175
REMARK 465 ARG A 176
REMARK 465 VAL A 177
REMARK 465 PRO A 178
REMARK 465 ALA A 179
REMARK 465 ALA A 180
REMARK 465 ALA A 181
REMARK 465 THR A 182
REMARK 465 LEU A 183
REMARK 465 ALA A 184
REMARK 465 VAL A 185
REMARK 465 GLY A 186
REMARK 465 THR A 187
REMARK 465 MET A 188
REMARK 465 CYS A 189
REMARK 465 GLY A 190
REMARK 465 VAL A 191
REMARK 465 TYR A 192
REMARK 465 GLY A 193
REMARK 465 SER A 194
REMARK 465 ALA A 195
REMARK 465 LEU A 196
REMARK 465 CYS A 197
REMARK 465 ASN A 198
REMARK 465 ALA A 199
REMARK 465 GLN A 200
REMARK 465 ARG A 201
REMARK 465 TRP A 202
REMARK 465 LEU A 203
REMARK 465 ASN A 204
REMARK 465 PHE A 205
REMARK 465 GLN A 206
REMARK 465 GLY A 207
REMARK 465 ASP A 208
REMARK 465 THR A 209
REMARK 465 GLY A 210
REMARK 465 ASN A 211
REMARK 465 GLY A 212
REMARK 465 LEU A 213
REMARK 465 ALA A 214
REMARK 465 PRO A 215
REMARK 465 LEU A 216
REMARK 465 ASP A 217
REMARK 465 ILE A 218
REMARK 465 THR A 219
REMARK 465 PHE A 220
REMARK 465 HIS A 221
REMARK 465 LEU A 222
REMARK 465 LEU A 223
REMARK 465 GLU A 224
REMARK 465 PRO A 225
REMARK 465 GLY A 226
REMARK 465 GLN A 227
REMARK 465 ALA A 228
REMARK 465 VAL A 229
REMARK 465 GLY A 230
REMARK 465 SER A 231
REMARK 465 GLY A 232
REMARK 465 ILE A 233
REMARK 465 GLN A 234
REMARK 465 PRO A 235
REMARK 465 LEU A 236
REMARK 465 ASN A 237
REMARK 465 GLU A 238
REMARK 465 GLY A 239
REMARK 465 VAL A 240
REMARK 465 ALA A 241
REMARK 465 ARG A 242
REMARK 465 CYS A 243
REMARK 465 ASN A 244
REMARK 465 GLU A 245
REMARK 465 SER A 246
REMARK 465 GLN A 247
REMARK 465 GLY A 248
REMARK 465 ASP A 249
REMARK 465 ASP A 250
REMARK 465 VAL A 251
REMARK 465 ALA A 252
REMARK 465 THR A 253
REMARK 465 CYS A 254
REMARK 465 SER A 255
REMARK 465 CYS A 256
REMARK 465 GLN A 257
REMARK 465 ASP A 258
REMARK 465 CYS A 259
REMARK 465 ALA A 260
REMARK 465 ALA A 261
REMARK 465 SER A 262
REMARK 465 CYS A 263
REMARK 465 PRO A 264
REMARK 465 ALA A 265
REMARK 465 ILE A 266
REMARK 465 ALA A 267
REMARK 465 ARG A 268
REMARK 465 PRO A 269
REMARK 465 GLN A 270
REMARK 465 ALA A 271
REMARK 465 LEU A 272
REMARK 465 ASP A 273
REMARK 465 SER A 274
REMARK 465 THR A 275
REMARK 465 PHE A 276
REMARK 465 TYR A 277
REMARK 465 LEU A 278
REMARK 465 GLY A 279
REMARK 465 GLN A 280
REMARK 465 MET A 281
REMARK 465 PRO A 282
REMARK 465 GLY A 283
REMARK 465 SER A 284
REMARK 465 LEU A 285
REMARK 465 VAL A 286
REMARK 465 LEU A 287
REMARK 465 ILE A 288
REMARK 465 ILE A 289
REMARK 465 ILE A 290
REMARK 465 LEU A 291
REMARK 465 CYS A 292
REMARK 465 SER A 293
REMARK 465 VAL A 294
REMARK 465 PHE A 295
REMARK 465 ALA A 296
REMARK 465 VAL A 297
REMARK 465 VAL A 298
REMARK 465 THR A 299
REMARK 465 ILE A 300
REMARK 465 LEU A 301
REMARK 465 LEU A 302
REMARK 465 VAL A 303
REMARK 465 GLY A 304
REMARK 465 PHE A 305
REMARK 465 ARG A 306
REMARK 465 VAL A 307
REMARK 465 ALA A 308
REMARK 465 PRO A 309
REMARK 465 ALA A 310
REMARK 465 ARG A 311
REMARK 465 ASP A 312
REMARK 465 LYS A 313
REMARK 465 SER A 314
REMARK 465 LYS A 315
REMARK 465 MET A 316
REMARK 465 VAL A 317
REMARK 465 ASP A 318
REMARK 465 PRO A 319
REMARK 465 LYS A 320
REMARK 465 LYS A 321
REMARK 465 GLY A 322
REMARK 465 THR A 323
REMARK 465 SER A 324
REMARK 465 LEU A 325
REMARK 465 SER A 326
REMARK 465 ASP A 327
REMARK 465 LYS A 328
REMARK 465 LEU A 329
REMARK 465 SER A 330
REMARK 465 PHE A 331
REMARK 465 LEU A 649
REMARK 465 ALA A 650
REMARK 465 LEU A 651
REMARK 465 GLY A 652
REMARK 465 SER A 653
REMARK 465 TYR A 654
REMARK 465 SER A 655
REMARK 465 SER A 656
REMARK 465 TRP A 657
REMARK 465 SER A 658
REMARK 465 ARG A 659
REMARK 465 VAL A 660
REMARK 465 MET A 661
REMARK 465 VAL A 662
REMARK 465 ASP A 663
REMARK 465 SER A 664
REMARK 465 LYS A 665
REMARK 465 ALA A 666
REMARK 465 THR A 667
REMARK 465 ARG A 801
REMARK 465 GLN A 802
REMARK 465 GLU A 803
REMARK 465 ALA A 804
REMARK 465 SER A 805
REMARK 465 ARG A 806
REMARK 465 LEU A 807
REMARK 465 ASP A 808
REMARK 465 VAL A 809
REMARK 465 CYS A 810
REMARK 465 CYS A 811
REMARK 465 CYS A 812
REMARK 465 VAL A 813
REMARK 465 LYS A 814
REMARK 465 PRO A 815
REMARK 465 GLN A 816
REMARK 465 GLU A 817
REMARK 465 LEU A 818
REMARK 465 PRO A 819
REMARK 465 PRO A 820
REMARK 465 PRO A 821
REMARK 465 GLY A 822
REMARK 465 GLN A 823
REMARK 465 GLY A 824
REMARK 465 GLU A 825
REMARK 465 GLY A 826
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O ALA A 923 OG SER A 1000 2.16
REMARK 500 OE1 GLN A 409 OH TYR A 886 2.17
REMARK 500 OH TYR A 836 O LEU A 1255 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ASP A 478 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 THR A 373 -62.44 -121.41
REMARK 500 MET A 510 -5.77 76.37
REMARK 500 ASP A 517 -168.49 -101.75
REMARK 500 LYS A 562 68.87 61.02
REMARK 500 ARG A 726 69.25 61.77
REMARK 500 LEU A 828 -8.84 74.91
REMARK 500 ALA A 923 62.58 63.97
REMARK 500 PRO A 963 -167.40 -67.52
REMARK 500 SER A 964 67.59 67.43
REMARK 500 SER A 965 42.95 73.04
REMARK 500 LYS A 978 -61.51 -93.96
REMARK 500 ASN A 988 -61.15 -93.08
REMARK 500 SER A1000 66.97 61.16
REMARK 500 ASN A1017 23.79 -140.11
REMARK 500 LYS A1023 -15.83 -143.29
REMARK 500 CYS A1024 85.72 -159.64
REMARK 500 LEU A1133 68.22 60.92
REMARK 500 LEU A1135 -39.25 -132.42
REMARK 500 ASN A1164 -167.46 -129.26
REMARK 500 LYS A1231 -2.11 74.27
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 ILE A 1022 LYS A 1023 149.64
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: EMD-30668 RELATED DB: EMDB
REMARK 900 DELTA N-NPC1L1-EZE
DBREF1 7DFZ A 1 1273 UNP A0A0C4DFX6_HUMAN
DBREF2 7DFZ A A0A0C4DFX6 1 1273
SEQRES 1 A 1273 MET ALA GLU ALA GLY LEU ARG GLY TRP LEU LEU TRP ALA
SEQRES 2 A 1273 LEU LEU LEU ARG LEU ALA GLN SER GLU PRO TYR THR THR
SEQRES 3 A 1273 ILE HIS GLN PRO GLY TYR CYS ALA PHE TYR ASP GLU CYS
SEQRES 4 A 1273 GLY LYS ASN PRO GLU LEU SER GLY SER LEU MET THR LEU
SEQRES 5 A 1273 SER ASN VAL SER CYS LEU SER ASN THR PRO ALA ARG LYS
SEQRES 6 A 1273 ILE THR GLY ASP HIS LEU ILE LEU LEU GLN LYS ILE CYS
SEQRES 7 A 1273 PRO ARG LEU TYR THR GLY PRO ASN THR GLN ALA CYS CYS
SEQRES 8 A 1273 SER ALA LYS GLN LEU VAL SER LEU GLU ALA SER LEU SER
SEQRES 9 A 1273 ILE THR LYS ALA LEU LEU THR ARG CYS PRO ALA CYS SER
SEQRES 10 A 1273 ASP ASN PHE VAL ASN LEU HIS CYS HIS ASN THR CYS SER
SEQRES 11 A 1273 PRO ASN GLN SER LEU PHE ILE ASN VAL THR ARG VAL ALA
SEQRES 12 A 1273 GLN LEU GLY ALA GLY GLN LEU PRO ALA VAL VAL ALA TYR
SEQRES 13 A 1273 GLU ALA PHE TYR GLN HIS SER PHE ALA GLU GLN SER TYR
SEQRES 14 A 1273 ASP SER CYS SER ARG VAL ARG VAL PRO ALA ALA ALA THR
SEQRES 15 A 1273 LEU ALA VAL GLY THR MET CYS GLY VAL TYR GLY SER ALA
SEQRES 16 A 1273 LEU CYS ASN ALA GLN ARG TRP LEU ASN PHE GLN GLY ASP
SEQRES 17 A 1273 THR GLY ASN GLY LEU ALA PRO LEU ASP ILE THR PHE HIS
SEQRES 18 A 1273 LEU LEU GLU PRO GLY GLN ALA VAL GLY SER GLY ILE GLN
SEQRES 19 A 1273 PRO LEU ASN GLU GLY VAL ALA ARG CYS ASN GLU SER GLN
SEQRES 20 A 1273 GLY ASP ASP VAL ALA THR CYS SER CYS GLN ASP CYS ALA
SEQRES 21 A 1273 ALA SER CYS PRO ALA ILE ALA ARG PRO GLN ALA LEU ASP
SEQRES 22 A 1273 SER THR PHE TYR LEU GLY GLN MET PRO GLY SER LEU VAL
SEQRES 23 A 1273 LEU ILE ILE ILE LEU CYS SER VAL PHE ALA VAL VAL THR
SEQRES 24 A 1273 ILE LEU LEU VAL GLY PHE ARG VAL ALA PRO ALA ARG ASP
SEQRES 25 A 1273 LYS SER LYS MET VAL ASP PRO LYS LYS GLY THR SER LEU
SEQRES 26 A 1273 SER ASP LYS LEU SER PHE SER THR HIS THR LEU LEU GLY
SEQRES 27 A 1273 GLN PHE PHE GLN GLY TRP GLY THR TRP VAL ALA SER TRP
SEQRES 28 A 1273 PRO LEU THR ILE LEU VAL LEU SER VAL ILE PRO VAL VAL
SEQRES 29 A 1273 ALA LEU ALA ALA GLY LEU VAL PHE THR GLU LEU THR THR
SEQRES 30 A 1273 ASP PRO VAL GLU LEU TRP SER ALA PRO ASN SER GLN ALA
SEQRES 31 A 1273 ARG SER GLU LYS ALA PHE HIS ASP GLN HIS PHE GLY PRO
SEQRES 32 A 1273 PHE PHE ARG THR ASN GLN VAL ILE LEU THR ALA PRO ASN
SEQRES 33 A 1273 ARG SER SER TYR ARG TYR ASP SER LEU LEU LEU GLY PRO
SEQRES 34 A 1273 LYS ASN PHE SER GLY ILE LEU ASP LEU ASP LEU LEU LEU
SEQRES 35 A 1273 GLU LEU LEU GLU LEU GLN GLU ARG LEU ARG HIS LEU GLN
SEQRES 36 A 1273 VAL TRP SER PRO GLU ALA GLN ARG ASN ILE SER LEU GLN
SEQRES 37 A 1273 ASP ILE CYS TYR ALA PRO LEU ASN PRO ASP ASN THR SER
SEQRES 38 A 1273 LEU TYR ASP CYS CYS ILE ASN SER LEU LEU GLN TYR PHE
SEQRES 39 A 1273 GLN ASN ASN ARG THR LEU LEU LEU LEU THR ALA ASN GLN
SEQRES 40 A 1273 THR LEU MET GLY GLN THR SER GLN VAL ASP TRP LYS ASP
SEQRES 41 A 1273 HIS PHE LEU TYR CYS ALA ASN ALA PRO LEU THR PHE LYS
SEQRES 42 A 1273 ASP GLY THR ALA LEU ALA LEU SER CYS MET ALA ASP TYR
SEQRES 43 A 1273 GLY ALA PRO VAL PHE PRO PHE LEU ALA ILE GLY GLY TYR
SEQRES 44 A 1273 LYS GLY LYS ASP TYR SER GLU ALA GLU ALA LEU ILE MET
SEQRES 45 A 1273 THR PHE SER LEU ASN ASN TYR PRO ALA GLY ASP PRO ARG
SEQRES 46 A 1273 LEU ALA GLN ALA LYS LEU TRP GLU GLU ALA PHE LEU GLU
SEQRES 47 A 1273 GLU MET ARG ALA PHE GLN ARG ARG MET ALA GLY MET PHE
SEQRES 48 A 1273 GLN VAL THR PHE MET ALA GLU ARG SER LEU GLU ASP GLU
SEQRES 49 A 1273 ILE ASN ARG THR THR ALA GLU ASP LEU PRO ILE PHE ALA
SEQRES 50 A 1273 THR SER TYR ILE VAL ILE PHE LEU TYR ILE SER LEU ALA
SEQRES 51 A 1273 LEU GLY SER TYR SER SER TRP SER ARG VAL MET VAL ASP
SEQRES 52 A 1273 SER LYS ALA THR LEU GLY LEU GLY GLY VAL ALA VAL VAL
SEQRES 53 A 1273 LEU GLY ALA VAL MET ALA ALA MET GLY PHE PHE SER TYR
SEQRES 54 A 1273 LEU GLY ILE ARG SER SER LEU VAL ILE LEU GLN VAL VAL
SEQRES 55 A 1273 PRO PHE LEU VAL LEU SER VAL GLY ALA ASP ASN ILE PHE
SEQRES 56 A 1273 ILE PHE VAL LEU GLU TYR GLN ARG LEU PRO ARG ARG PRO
SEQRES 57 A 1273 GLY GLU PRO ARG GLU VAL HIS ILE GLY ARG ALA LEU GLY
SEQRES 58 A 1273 ARG VAL ALA PRO SER MET LEU LEU CYS SER LEU SER GLU
SEQRES 59 A 1273 ALA ILE CYS PHE PHE LEU GLY ALA LEU THR PRO MET PRO
SEQRES 60 A 1273 ALA VAL ARG THR PHE ALA LEU THR SER GLY LEU ALA VAL
SEQRES 61 A 1273 ILE LEU ASP PHE LEU LEU GLN MET SER ALA PHE VAL ALA
SEQRES 62 A 1273 LEU LEU SER LEU ASP SER LYS ARG GLN GLU ALA SER ARG
SEQRES 63 A 1273 LEU ASP VAL CYS CYS CYS VAL LYS PRO GLN GLU LEU PRO
SEQRES 64 A 1273 PRO PRO GLY GLN GLY GLU GLY LEU LEU LEU GLY PHE PHE
SEQRES 65 A 1273 GLN LYS ALA TYR ALA PRO PHE LEU LEU HIS TRP ILE THR
SEQRES 66 A 1273 ARG GLY VAL VAL LEU LEU LEU PHE LEU ALA LEU PHE GLY
SEQRES 67 A 1273 VAL SER LEU TYR SER MET CYS HIS ILE SER VAL GLY LEU
SEQRES 68 A 1273 ASP GLN GLU LEU ALA LEU PRO LYS ASP SER TYR LEU LEU
SEQRES 69 A 1273 ASP TYR PHE LEU PHE LEU ASN ARG TYR PHE GLU VAL GLY
SEQRES 70 A 1273 ALA PRO VAL TYR PHE VAL THR THR LEU GLY TYR ASN PHE
SEQRES 71 A 1273 SER SER GLU ALA GLY MET ASN ALA ILE CYS SER SER ALA
SEQRES 72 A 1273 GLY CYS ASN ASN PHE SER PHE THR GLN LYS ILE GLN TYR
SEQRES 73 A 1273 ALA THR GLU PHE PRO GLU GLN SER TYR LEU ALA ILE PRO
SEQRES 74 A 1273 ALA SER SER TRP VAL ASP ASP PHE ILE ASP TRP LEU THR
SEQRES 75 A 1273 PRO SER SER CYS CYS ARG LEU TYR ILE SER GLY PRO ASN
SEQRES 76 A 1273 LYS ASP LYS PHE CYS PRO SER THR VAL ASN SER LEU ASN
SEQRES 77 A 1273 CYS LEU LYS ASN CYS MET SER ILE THR MET GLY SER VAL
SEQRES 78 A 1273 ARG PRO SER VAL GLU GLN PHE HIS LYS TYR LEU PRO TRP
SEQRES 79 A 1273 PHE LEU ASN ASP ARG PRO ASN ILE LYS CYS PRO LYS GLY
SEQRES 80 A 1273 GLY LEU ALA ALA TYR SER THR SER VAL ASN LEU THR SER
SEQRES 81 A 1273 ASP GLY GLN VAL LEU ALA SER ARG PHE MET ALA TYR HIS
SEQRES 82 A 1273 LYS PRO LEU LYS ASN SER GLN ASP TYR THR GLU ALA LEU
SEQRES 83 A 1273 ARG ALA ALA ARG GLU LEU ALA ALA ASN ILE THR ALA ASP
SEQRES 84 A 1273 LEU ARG LYS VAL PRO GLY THR ASP PRO ALA PHE GLU VAL
SEQRES 85 A 1273 PHE PRO TYR THR ILE THR ASN VAL PHE TYR GLU GLN TYR
SEQRES 86 A 1273 LEU THR ILE LEU PRO GLU GLY LEU PHE MET LEU SER LEU
SEQRES 87 A 1273 CYS LEU VAL PRO THR PHE ALA VAL SER CYS LEU LEU LEU
SEQRES 88 A 1273 GLY LEU ASP LEU ARG SER GLY LEU LEU ASN LEU LEU SER
SEQRES 89 A 1273 ILE VAL MET ILE LEU VAL ASP THR VAL GLY PHE MET ALA
SEQRES 90 A 1273 LEU TRP GLY ILE SER TYR ASN ALA VAL SER LEU ILE ASN
SEQRES 91 A 1273 LEU VAL SER ALA VAL GLY MET SER VAL GLU PHE VAL SER
SEQRES 92 A 1273 HIS ILE THR ARG SER PHE ALA ILE SER THR LYS PRO THR
SEQRES 93 A 1273 TRP LEU GLU ARG ALA LYS GLU ALA THR ILE SER MET GLY
SEQRES 94 A 1273 SER ALA VAL PHE ALA GLY VAL ALA MET THR ASN LEU PRO
SEQRES 95 A 1273 GLY ILE LEU VAL LEU GLY LEU ALA LYS ALA GLN LEU ILE
SEQRES 96 A 1273 GLN ILE PHE PHE PHE ARG LEU ASN LEU LEU ILE THR LEU
SEQRES 97 A 1273 LEU GLY LEU LEU HIS GLY LEU VAL PHE LEU PRO VAL ILE
SEQRES 98 A 1273 LEU SER TYR VAL GLY PRO ASP VAL ASN PRO ALA LEU
HET NAG E 1 14
HET NAG E 2 14
HET NAG E 3 14
HET NAG H 1 14
HET NAG H 2 14
HET NAG J 1 14
HET NAG J 2 14
HET NAG J 3 14
HET NAG P 1 14
HET NAG P 2 14
HET NAG P 3 14
HET NAG T 1 14
HET NAG T 2 14
HET NAG T 3 14
HET NAG A1301 14
HET NAG A1302 14
HET NAG A1303 14
HET NAG A1304 14
HET NAG A1305 14
HET H56 A1306 51
HET CLR A1307 28
HET CLR A1308 28
HET CLR A1309 74
HET CLR A1310 74
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM H56 (3~{R},4~{S})-1-(4-FLUOROPHENYL)-3-[(3~{S})-3-(4-
HETNAM 2 H56 FLUOROPHENYL)-3-OXIDANYL-PROPYL]-4-(4-HYDROXYPHENYL)
HETNAM 3 H56 AZETIDIN-2-ONE
HETNAM CLR CHOLESTEROL
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
FORMUL 2 NAG 19(C8 H15 N O6)
FORMUL 12 H56 C24 H21 F2 N O3
FORMUL 13 CLR 4(C27 H46 O)
HELIX 1 AA1 SER A 332 TRP A 351 1 20
HELIX 2 AA2 TRP A 351 THR A 373 1 23
HELIX 3 AA3 SER A 388 GLY A 402 1 15
HELIX 4 AA4 ASP A 437 HIS A 453 1 17
HELIX 5 AA5 SER A 481 CYS A 485 5 5
HELIX 6 AA6 SER A 489 PHE A 494 5 6
HELIX 7 AA7 ASN A 497 LEU A 502 1 6
HELIX 8 AA8 ASP A 517 ALA A 528 1 12
HELIX 9 AA9 PHE A 551 LEU A 554 5 4
HELIX 10 AB1 ASP A 583 MET A 607 1 25
HELIX 11 AB2 ALA A 617 ASP A 623 1 7
HELIX 12 AB3 GLU A 624 GLU A 631 1 8
HELIX 13 AB4 THR A 638 SER A 648 1 11
HELIX 14 AB5 GLY A 669 GLY A 691 1 23
HELIX 15 AB6 VAL A 697 VAL A 701 5 5
HELIX 16 AB7 VAL A 702 GLN A 722 1 21
HELIX 17 AB8 PRO A 731 ARG A 742 1 12
HELIX 18 AB9 VAL A 743 CYS A 750 1 8
HELIX 19 AC1 GLU A 754 GLY A 761 1 8
HELIX 20 AC2 ALA A 762 THR A 764 5 3
HELIX 21 AC3 MET A 766 VAL A 780 1 15
HELIX 22 AC4 VAL A 780 LEU A 785 1 6
HELIX 23 AC5 ALA A 790 ASP A 798 1 9
HELIX 24 AC6 LEU A 828 LEU A 840 1 13
HELIX 25 AC7 VAL A 848 MET A 864 1 17
HELIX 26 AC8 CYS A 865 ILE A 867 5 3
HELIX 27 AC9 ASP A 872 LEU A 877 5 6
HELIX 28 AD1 SER A 881 PHE A 894 1 14
HELIX 29 AD2 SER A 912 ASN A 917 1 6
HELIX 30 AD3 SER A 929 GLU A 939 1 11
HELIX 31 AD4 SER A 952 LEU A 961 1 10
HELIX 32 AD5 VAL A 1005 LEU A 1016 1 12
HELIX 33 AD6 ASN A 1058 ARG A 1081 1 24
HELIX 34 AD7 GLU A 1103 ILE A 1108 5 6
HELIX 35 AD8 LEU A 1109 LEU A 1120 1 12
HELIX 36 AD9 LEU A 1120 LEU A 1131 1 12
HELIX 37 AE1 LEU A 1135 GLY A 1160 1 26
HELIX 38 AE2 LEU A 1168 SER A 1178 1 11
HELIX 39 AE3 SER A 1178 SER A 1192 1 15
HELIX 40 AE4 THR A 1196 LEU A 1225 1 30
HELIX 41 AE5 VAL A 1226 ALA A 1230 5 5
HELIX 42 AE6 ALA A 1232 PHE A 1239 1 8
HELIX 43 AE7 LEU A 1242 LEU A 1251 1 10
HELIX 44 AE8 LEU A 1251 VAL A 1256 1 6
HELIX 45 AE9 PHE A 1257 SER A 1263 1 7
SHEET 1 AA1 3 ILE A 487 ASN A 488 0
SHEET 2 AA1 3 ALA A 569 LEU A 576 -1 O THR A 573 N ASN A 488
SHEET 3 AA1 3 ILE A 556 GLY A 557 -1 N GLY A 557 O ALA A 569
SHEET 1 AA2 4 ILE A 487 ASN A 488 0
SHEET 2 AA2 4 ALA A 569 LEU A 576 -1 O THR A 573 N ASN A 488
SHEET 3 AA2 4 ARG A 406 ILE A 411 -1 N ARG A 406 O LEU A 576
SHEET 4 AA2 4 THR A 614 MET A 616 -1 O THR A 614 N ILE A 411
SHEET 1 AA3 2 TYR A 422 SER A 424 0
SHEET 2 AA3 2 GLY A 428 LYS A 430 -1 O LYS A 430 N TYR A 422
SHEET 1 AA4 2 ALA A 505 ASN A 506 0
SHEET 2 AA4 2 GLN A 515 VAL A 516 -1 O VAL A 516 N ALA A 505
SHEET 1 AA5 3 MET A1050 TYR A1052 0
SHEET 2 AA5 3 PRO A 899 THR A 904 -1 N VAL A 900 O ALA A1051
SHEET 3 AA5 3 VAL A1092 TYR A1095 -1 O TYR A1095 N TYR A 901
SHEET 1 AA6 2 ARG A 968 LEU A 969 0
SHEET 2 AA6 2 LYS A 991 ASN A 992 -1 O LYS A 991 N LEU A 969
SHEET 1 AA7 2 VAL A1036 LEU A1038 0
SHEET 2 AA7 2 VAL A1044 SER A1047 -1 O LEU A1045 N ASN A1037
SSBOND 1 CYS A 471 CYS A 485 1555 1555 2.03
SSBOND 2 CYS A 525 CYS A 542 1555 1555 2.03
SSBOND 3 CYS A 920 CYS A 925 1555 1555 2.04
SSBOND 4 CYS A 966 CYS A 1024 1555 1555 2.03
SSBOND 5 CYS A 967 CYS A 993 1555 1555 2.03
SSBOND 6 CYS A 980 CYS A 989 1555 1555 2.04
LINK ND2 ASN A 416 C1 NAG A1303 1555 1555 1.44
LINK ND2 ASN A 431 C1 NAG A1301 1555 1555 1.45
LINK ND2 ASN A 464 C1 NAG E 1 1555 1555 1.44
LINK ND2 ASN A 479 C1 NAG A1305 1555 1555 1.45
LINK ND2 ASN A 497 C1 NAG J 1 1555 1555 1.44
LINK ND2 ASN A 506 C1 NAG H 1 1555 1555 1.46
LINK ND2 ASN A 909 C1 NAG P 1 1555 1555 1.45
LINK ND2 ASN A 927 C1 NAG A1302 1555 1555 1.44
LINK ND2 ASN A1037 C1 NAG T 1 1555 1555 1.44
LINK ND2 ASN A1075 C1 NAG A1304 1555 1555 1.44
LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44
LINK O3 NAG E 2 C1 NAG E 3 1555 1555 1.44
LINK O3 NAG H 1 C1 NAG H 2 1555 1555 1.46
LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.44
LINK O4 NAG J 2 C1 NAG J 3 1555 1555 1.45
LINK O4 NAG P 1 C1 NAG P 2 1555 1555 1.44
LINK O3 NAG P 2 C1 NAG P 3 1555 1555 1.45
LINK O4 NAG T 1 C1 NAG T 2 1555 1555 1.44
LINK O4 NAG T 2 C1 NAG T 3 1555 1555 1.45
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000