data_7DG7 # _entry.id 7DG7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7DG7 pdb_00007dg7 10.2210/pdb7dg7/pdb WWPDB D_1300019339 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7DG7 _pdbx_database_status.recvd_initial_deposition_date 2020-11-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yagi, S.' 1 0000-0002-7117-3318 'Tagami, S.' 2 0000-0002-1720-3627 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary J.Am.Chem.Soc. JACSAT ? 1520-5126 ? ? 143 ? 15998 16006 'Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.' 2021 ? 10.1021/jacs.1c05367 34559526 ? ? ? ? ? ? ? ? US ? ? 1 Biorxiv ? ? ? ? ? ? ? ? ? 'Seven amino acid types suffice to reconstruct the core fold of RNA polymerase' 2021 ? 10.1101/2021.02.22.432383 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yagi, S.' 1 ? primary 'Padhi, A.K.' 2 ? primary 'Vucinic, J.' 3 ? primary 'Barbe, S.' 4 ? primary 'Schiex, T.' 5 ? primary 'Nakagawa, R.' 6 0000-0002-6178-2945 primary 'Simoncini, D.' 7 ? primary 'Zhang, K.Y.J.' 8 0000-0002-9282-8045 primary 'Tagami, S.' 9 0000-0002-1720-3627 1 'Yagi, S.' 10 ? 1 'Padhi, A.K.' 11 ? 1 'Vucinic, J.' 12 ? 1 'Barbe, S.' 13 ? 1 'Schiex, T.' 14 ? 1 'Nakagawa, R.' 15 ? 1 'Simoncini, D.' 16 ? 1 'Zhang, K.Y.J.' 17 ? 1 'Tagami, S.' 18 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 106.420 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7DG7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 32.078 _cell.length_a_esd ? _cell.length_b 29.787 _cell.length_b_esd ? _cell.length_c 42.155 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATPase of the AAA+ class' 9993.531 1 ? ? 'DPBB domain' ? 2 non-polymer syn IMIDAZOLE 69.085 2 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 8 ? ? ? ? 4 water nat water 18.015 68 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VCP-like ATPase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPMPGLPIKLRVEKAYPEDVGKRAVRMDKASRDRIGVSEGDLVKITGSKTTVARVLPAKKEDVGKGIVRMDKYERQNAGA SVGEPVEVDRAE ; _entity_poly.pdbx_seq_one_letter_code_can ;GPMPGLPIKLRVEKAYPEDVGKRAVRMDKASRDRIGVSEGDLVKITGSKTTVARVLPAKKEDVGKGIVRMDKYERQNAGA SVGEPVEVDRAE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 MET n 1 4 PRO n 1 5 GLY n 1 6 LEU n 1 7 PRO n 1 8 ILE n 1 9 LYS n 1 10 LEU n 1 11 ARG n 1 12 VAL n 1 13 GLU n 1 14 LYS n 1 15 ALA n 1 16 TYR n 1 17 PRO n 1 18 GLU n 1 19 ASP n 1 20 VAL n 1 21 GLY n 1 22 LYS n 1 23 ARG n 1 24 ALA n 1 25 VAL n 1 26 ARG n 1 27 MET n 1 28 ASP n 1 29 LYS n 1 30 ALA n 1 31 SER n 1 32 ARG n 1 33 ASP n 1 34 ARG n 1 35 ILE n 1 36 GLY n 1 37 VAL n 1 38 SER n 1 39 GLU n 1 40 GLY n 1 41 ASP n 1 42 LEU n 1 43 VAL n 1 44 LYS n 1 45 ILE n 1 46 THR n 1 47 GLY n 1 48 SER n 1 49 LYS n 1 50 THR n 1 51 THR n 1 52 VAL n 1 53 ALA n 1 54 ARG n 1 55 VAL n 1 56 LEU n 1 57 PRO n 1 58 ALA n 1 59 LYS n 1 60 LYS n 1 61 GLU n 1 62 ASP n 1 63 VAL n 1 64 GLY n 1 65 LYS n 1 66 GLY n 1 67 ILE n 1 68 VAL n 1 69 ARG n 1 70 MET n 1 71 ASP n 1 72 LYS n 1 73 TYR n 1 74 GLU n 1 75 ARG n 1 76 GLN n 1 77 ASN n 1 78 ALA n 1 79 GLY n 1 80 ALA n 1 81 SER n 1 82 VAL n 1 83 GLY n 1 84 GLU n 1 85 PRO n 1 86 VAL n 1 87 GLU n 1 88 VAL n 1 89 ASP n 1 90 ARG n 1 91 ALA n 1 92 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 92 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MK0486 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 190192 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8TY20_METKA _struct_ref.pdbx_db_accession Q8TY20 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MPGLPIKLRVEKAYPEDVGKRAVRMDKASRDRIGVSEGDLVKITGSKTTVARVLPAKKEDVGKGIVRMDKYERQNAGASV GEPVEVDRAE ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7DG7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 92 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8TY20 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 90 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 92 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7DG7 GLY A 1 ? UNP Q8TY20 ? ? 'expression tag' 1 1 1 7DG7 PRO A 2 ? UNP Q8TY20 ? ? 'expression tag' 2 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7DG7 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 36.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100mM imidazole/HCl pH7.8, 2M NaCl, 200mM Zinc acetate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-06-21 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7DG7 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.6 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10094 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.20 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.97 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.7 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1569 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.979 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 61.600 _refine.B_iso_mean 20.4052 _refine.B_iso_min 3.870 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7DG7 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.6040 _refine.ls_d_res_low 40.4360 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9933 _refine.ls_number_reflns_R_free 993 _refine.ls_number_reflns_R_work 8940 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.4100 _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2086 _refine.ls_R_factor_R_free 0.2273 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2065 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.3600 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.6040 _refine_hist.d_res_low 40.4360 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 744 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 86 _refine_hist.pdbx_B_iso_mean_ligand 26.11 _refine_hist.pdbx_B_iso_mean_solvent 28.04 _refine_hist.pdbx_number_atoms_protein 658 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6041 1.6887 . . 133 1206 92.0000 . . . 0.2926 0.0000 0.2343 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6887 1.7945 . . 137 1213 95.0000 . . . 0.2902 0.0000 0.2299 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7945 1.9330 . . 139 1265 97.0000 . . . 0.2908 0.0000 0.2174 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9330 2.1275 . . 142 1288 98.0000 . . . 0.2387 0.0000 0.2078 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1275 2.4354 . . 145 1295 100.0000 . . . 0.1968 0.0000 0.2070 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4354 3.0682 . . 145 1314 100.0000 . . . 0.2367 0.0000 0.2130 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0682 40.4360 . . 152 1359 100.0000 . . . 0.1934 0.0000 0.1910 . . . . . . . . . . . # _struct.entry_id 7DG7 _struct.title 'DPBB domain of VCP-like ATPase from Methanopyrus kandleri' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7DG7 _struct_keywords.text 'Double psi beta barrel, CHAPERONE' _struct_keywords.pdbx_keywords CHAPERONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 16 ? VAL A 20 ? TYR A 16 VAL A 20 5 ? 5 HELX_P HELX_P2 AA2 ASP A 28 ? GLY A 36 ? ASP A 28 GLY A 36 1 ? 9 HELX_P HELX_P3 AA3 LYS A 59 ? VAL A 63 ? LYS A 59 VAL A 63 5 ? 5 HELX_P HELX_P4 AA4 ASP A 71 ? GLY A 79 ? ASP A 71 GLY A 79 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A LYS 9 NZ ? ? ? 1_555 I ZN . ZN ? ? A LYS 9 A ZN 108 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc2 metalc ? ? A GLU 13 OE1 ? ? ? 1_555 H ZN . ZN L ? A GLU 13 A ZN 107 1_555 ? ? ? ? ? ? ? 2.544 ? ? metalc3 metalc ? ? A GLU 13 OE2 ? ? ? 1_555 H ZN . ZN L ? A GLU 13 A ZN 107 1_555 ? ? ? ? ? ? ? 2.132 ? ? metalc4 metalc ? ? A GLU 18 OE2 ? ? ? 1_555 D ZN . ZN L ? A GLU 18 A ZN 103 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc5 metalc ? ? A LYS 22 O ? ? ? 1_555 G ZN . ZN L ? A LYS 22 A ZN 106 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc6 metalc ? ? A GLU 39 OE2 ? ? ? 1_555 F ZN . ZN L ? A GLU 39 A ZN 105 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc7 metalc ? ? A ASP 41 OD2 ? ? ? 1_555 K ZN . ZN ? ? A ASP 41 A ZN 110 1_555 ? ? ? ? ? ? ? 2.217 ? ? metalc8 metalc ? ? A GLU 61 OE1 ? ? ? 1_555 E ZN . ZN L ? A GLU 61 A ZN 104 1_555 ? ? ? ? ? ? ? 2.465 ? ? metalc9 metalc ? ? A ASP 71 OD1 ? ? ? 1_555 G ZN . ZN L ? A ASP 71 A ZN 106 1_555 ? ? ? ? ? ? ? 1.990 ? ? metalc10 metalc ? ? A GLU 74 OE2 ? ? ? 1_555 G ZN . ZN L ? A GLU 74 A ZN 106 1_555 ? ? ? ? ? ? ? 1.913 ? ? metalc11 metalc ? ? A GLU 84 OE1 ? ? ? 1_555 J ZN . ZN ? ? A GLU 84 A ZN 109 1_555 ? ? ? ? ? ? ? 2.467 ? ? metalc12 metalc ? ? A GLU 84 OE2 ? ? ? 1_555 J ZN . ZN ? ? A GLU 84 A ZN 109 1_555 ? ? ? ? ? ? ? 2.158 ? ? metalc13 metalc ? ? A GLU 87 OE2 ? ? ? 1_555 H ZN . ZN L ? A GLU 87 A ZN 107 2_757 ? ? ? ? ? ? ? 2.107 ? ? metalc14 metalc ? ? B IMD . N3 ? ? ? 1_555 H ZN . ZN L ? A IMD 101 A ZN 107 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc15 metalc ? ? C IMD . N1 ? ? ? 1_555 D ZN . ZN L ? A IMD 102 A ZN 103 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc16 metalc ? ? C IMD . N3 ? ? ? 1_555 E ZN . ZN L ? A IMD 102 A ZN 104 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc17 metalc ? ? D ZN . ZN L ? ? 1_555 L HOH . O ? ? A ZN 103 A HOH 257 2_746 ? ? ? ? ? ? ? 2.283 ? ? metalc18 metalc ? ? D ZN . ZN L ? ? 1_555 L HOH . O ? ? A ZN 103 A HOH 260 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc19 metalc ? ? E ZN . ZN L ? ? 1_555 L HOH . O ? ? A ZN 104 A HOH 202 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc20 metalc ? ? E ZN . ZN L ? ? 1_555 L HOH . O ? ? A ZN 104 A HOH 225 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc21 metalc ? ? F ZN . ZN L ? ? 1_555 L HOH . O ? ? A ZN 105 A HOH 261 1_555 ? ? ? ? ? ? ? 2.327 ? ? metalc22 metalc ? ? F ZN . ZN L ? ? 1_555 L HOH . O ? ? A ZN 105 A HOH 262 2_646 ? ? ? ? ? ? ? 2.494 ? ? metalc23 metalc ? ? G ZN . ZN L ? ? 1_555 L HOH . O ? ? A ZN 106 A HOH 253 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc24 metalc ? ? H ZN . ZN L ? ? 1_555 L HOH . O ? ? A ZN 107 A HOH 245 1_555 ? ? ? ? ? ? ? 2.257 ? ? metalc25 metalc ? ? I ZN . ZN ? ? ? 1_555 L HOH . O ? ? A ZN 108 A HOH 240 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc26 metalc ? ? J ZN . ZN ? ? ? 1_555 L HOH . O ? ? A ZN 109 A HOH 223 1_555 ? ? ? ? ? ? ? 2.645 ? ? metalc27 metalc ? ? J ZN . ZN ? ? ? 1_555 L HOH . O ? ? A ZN 109 A HOH 250 1_555 ? ? ? ? ? ? ? 2.514 ? ? metalc28 metalc ? ? K ZN . ZN ? ? ? 1_555 L HOH . O ? ? A ZN 110 A HOH 254 2_656 ? ? ? ? ? ? ? 2.188 ? ? metalc29 metalc ? ? K ZN . ZN ? ? ? 1_555 L HOH . O ? ? A ZN 110 A HOH 256 1_555 ? ? ? ? ? ? ? 2.387 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 8 ? LYS A 14 ? ILE A 8 LYS A 14 AA1 2 ILE A 67 ? MET A 70 ? ILE A 67 MET A 70 AA1 3 ALA A 24 ? MET A 27 ? ALA A 24 MET A 27 AA1 4 THR A 50 ? PRO A 57 ? THR A 50 PRO A 57 AA1 5 LEU A 42 ? THR A 46 ? LEU A 42 THR A 46 AA1 6 PRO A 85 ? ARG A 90 ? PRO A 85 ARG A 90 AA1 7 ILE A 8 ? LYS A 14 ? ILE A 8 LYS A 14 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 13 ? N GLU A 13 O MET A 70 ? O MET A 70 AA1 2 3 O ARG A 69 ? O ARG A 69 N ARG A 26 ? N ARG A 26 AA1 3 4 N VAL A 25 ? N VAL A 25 O LEU A 56 ? O LEU A 56 AA1 4 5 O ALA A 53 ? O ALA A 53 N VAL A 43 ? N VAL A 43 AA1 5 6 N LYS A 44 ? N LYS A 44 O ASP A 89 ? O ASP A 89 AA1 6 7 O VAL A 88 ? O VAL A 88 N ILE A 8 ? N ILE A 8 # _atom_sites.entry_id 7DG7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.031174 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009186 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033572 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024730 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 MET 3 3 ? ? ? A . n A 1 4 PRO 4 4 ? ? ? A . n A 1 5 GLY 5 5 ? ? ? A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 MET 27 27 27 MET MET A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 MET 70 70 70 MET MET A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLU 92 92 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD 1 101 204 IMD IMD A . C 2 IMD 1 102 205 IMD IMD A . D 3 ZN 1 103 1 ZN ZN A . E 3 ZN 1 104 2 ZN ZN A . F 3 ZN 1 105 3 ZN ZN A . G 3 ZN 1 106 4 ZN ZN A . H 3 ZN 1 107 5 ZN ZN A . I 3 ZN 1 108 6 ZN ZN A . J 3 ZN 1 109 7 ZN ZN A . K 3 ZN 1 110 8 ZN ZN A . L 4 HOH 1 201 29 HOH HOH A . L 4 HOH 2 202 51 HOH HOH A . L 4 HOH 3 203 52 HOH HOH A . L 4 HOH 4 204 69 HOH HOH A . L 4 HOH 5 205 65 HOH HOH A . L 4 HOH 6 206 1 HOH HOH A . L 4 HOH 7 207 38 HOH HOH A . L 4 HOH 8 208 19 HOH HOH A . L 4 HOH 9 209 31 HOH HOH A . L 4 HOH 10 210 6 HOH HOH A . L 4 HOH 11 211 57 HOH HOH A . L 4 HOH 12 212 5 HOH HOH A . L 4 HOH 13 213 30 HOH HOH A . L 4 HOH 14 214 66 HOH HOH A . L 4 HOH 15 215 16 HOH HOH A . L 4 HOH 16 216 12 HOH HOH A . L 4 HOH 17 217 42 HOH HOH A . L 4 HOH 18 218 44 HOH HOH A . L 4 HOH 19 219 3 HOH HOH A . L 4 HOH 20 220 2 HOH HOH A . L 4 HOH 21 221 17 HOH HOH A . L 4 HOH 22 222 43 HOH HOH A . L 4 HOH 23 223 56 HOH HOH A . L 4 HOH 24 224 40 HOH HOH A . L 4 HOH 25 225 49 HOH HOH A . L 4 HOH 26 226 22 HOH HOH A . L 4 HOH 27 227 41 HOH HOH A . L 4 HOH 28 228 24 HOH HOH A . L 4 HOH 29 229 54 HOH HOH A . L 4 HOH 30 230 14 HOH HOH A . L 4 HOH 31 231 67 HOH HOH A . L 4 HOH 32 232 7 HOH HOH A . L 4 HOH 33 233 48 HOH HOH A . L 4 HOH 34 234 25 HOH HOH A . L 4 HOH 35 235 8 HOH HOH A . L 4 HOH 36 236 4 HOH HOH A . L 4 HOH 37 237 15 HOH HOH A . L 4 HOH 38 238 68 HOH HOH A . L 4 HOH 39 239 28 HOH HOH A . L 4 HOH 40 240 33 HOH HOH A . L 4 HOH 41 241 55 HOH HOH A . L 4 HOH 42 242 18 HOH HOH A . L 4 HOH 43 243 47 HOH HOH A . L 4 HOH 44 244 26 HOH HOH A . L 4 HOH 45 245 11 HOH HOH A . L 4 HOH 46 246 39 HOH HOH A . L 4 HOH 47 247 13 HOH HOH A . L 4 HOH 48 248 50 HOH HOH A . L 4 HOH 49 249 20 HOH HOH A . L 4 HOH 50 250 61 HOH HOH A . L 4 HOH 51 251 36 HOH HOH A . L 4 HOH 52 252 37 HOH HOH A . L 4 HOH 53 253 10 HOH HOH A . L 4 HOH 54 254 34 HOH HOH A . L 4 HOH 55 255 63 HOH HOH A . L 4 HOH 56 256 35 HOH HOH A . L 4 HOH 57 257 9 HOH HOH A . L 4 HOH 58 258 53 HOH HOH A . L 4 HOH 59 259 60 HOH HOH A . L 4 HOH 60 260 32 HOH HOH A . L 4 HOH 61 261 21 HOH HOH A . L 4 HOH 62 262 27 HOH HOH A . L 4 HOH 63 263 58 HOH HOH A . L 4 HOH 64 264 45 HOH HOH A . L 4 HOH 65 265 46 HOH HOH A . L 4 HOH 66 266 62 HOH HOH A . L 4 HOH 67 267 59 HOH HOH A . L 4 HOH 68 268 23 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 170 ? 1 MORE -54 ? 1 'SSA (A^2)' 4980 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NZ ? A LYS 9 ? A LYS 9 ? 1_555 ZN ? I ZN . ? A ZN 108 ? 1_555 O ? L HOH . ? A HOH 240 ? 1_555 85.2 ? 2 OE1 ? A GLU 13 ? A GLU 13 ? 1_555 ZN L H ZN . ? A ZN 107 ? 1_555 OE2 ? A GLU 13 ? A GLU 13 ? 1_555 54.6 ? 3 OE1 ? A GLU 13 ? A GLU 13 ? 1_555 ZN L H ZN . ? A ZN 107 ? 1_555 OE2 ? A GLU 87 ? A GLU 87 ? 1_555 78.0 ? 4 OE2 ? A GLU 13 ? A GLU 13 ? 1_555 ZN L H ZN . ? A ZN 107 ? 1_555 OE2 ? A GLU 87 ? A GLU 87 ? 1_555 38.5 ? 5 OE1 ? A GLU 13 ? A GLU 13 ? 1_555 ZN L H ZN . ? A ZN 107 ? 1_555 N3 ? B IMD . ? A IMD 101 ? 1_555 96.9 ? 6 OE2 ? A GLU 13 ? A GLU 13 ? 1_555 ZN L H ZN . ? A ZN 107 ? 1_555 N3 ? B IMD . ? A IMD 101 ? 1_555 122.1 ? 7 OE2 ? A GLU 87 ? A GLU 87 ? 1_555 ZN L H ZN . ? A ZN 107 ? 1_555 N3 ? B IMD . ? A IMD 101 ? 1_555 92.3 ? 8 OE1 ? A GLU 13 ? A GLU 13 ? 1_555 ZN L H ZN . ? A ZN 107 ? 1_555 O ? L HOH . ? A HOH 245 ? 1_555 80.3 ? 9 OE2 ? A GLU 13 ? A GLU 13 ? 1_555 ZN L H ZN . ? A ZN 107 ? 1_555 O ? L HOH . ? A HOH 245 ? 1_555 110.3 ? 10 OE2 ? A GLU 87 ? A GLU 87 ? 1_555 ZN L H ZN . ? A ZN 107 ? 1_555 O ? L HOH . ? A HOH 245 ? 1_555 148.8 ? 11 N3 ? B IMD . ? A IMD 101 ? 1_555 ZN L H ZN . ? A ZN 107 ? 1_555 O ? L HOH . ? A HOH 245 ? 1_555 112.4 ? 12 OE2 ? A GLU 18 ? A GLU 18 ? 1_555 ZN L D ZN . ? A ZN 103 ? 1_555 N1 ? C IMD . ? A IMD 102 ? 1_555 95.3 ? 13 OE2 ? A GLU 18 ? A GLU 18 ? 1_555 ZN L D ZN . ? A ZN 103 ? 1_555 O ? L HOH . ? A HOH 257 ? 2_746 104.3 ? 14 N1 ? C IMD . ? A IMD 102 ? 1_555 ZN L D ZN . ? A ZN 103 ? 1_555 O ? L HOH . ? A HOH 257 ? 2_746 112.8 ? 15 OE2 ? A GLU 18 ? A GLU 18 ? 1_555 ZN L D ZN . ? A ZN 103 ? 1_555 O ? L HOH . ? A HOH 260 ? 1_555 116.7 ? 16 N1 ? C IMD . ? A IMD 102 ? 1_555 ZN L D ZN . ? A ZN 103 ? 1_555 O ? L HOH . ? A HOH 260 ? 1_555 112.6 ? 17 O ? L HOH . ? A HOH 257 ? 2_746 ZN L D ZN . ? A ZN 103 ? 1_555 O ? L HOH . ? A HOH 260 ? 1_555 113.6 ? 18 O ? A LYS 22 ? A LYS 22 ? 1_555 ZN L G ZN . ? A ZN 106 ? 1_555 OD1 ? A ASP 71 ? A ASP 71 ? 1_555 99.2 ? 19 O ? A LYS 22 ? A LYS 22 ? 1_555 ZN L G ZN . ? A ZN 106 ? 1_555 OE2 ? A GLU 74 ? A GLU 74 ? 1_555 98.3 ? 20 OD1 ? A ASP 71 ? A ASP 71 ? 1_555 ZN L G ZN . ? A ZN 106 ? 1_555 OE2 ? A GLU 74 ? A GLU 74 ? 1_555 105.8 ? 21 O ? A LYS 22 ? A LYS 22 ? 1_555 ZN L G ZN . ? A ZN 106 ? 1_555 O ? L HOH . ? A HOH 253 ? 1_555 99.8 ? 22 OD1 ? A ASP 71 ? A ASP 71 ? 1_555 ZN L G ZN . ? A ZN 106 ? 1_555 O ? L HOH . ? A HOH 253 ? 1_555 118.0 ? 23 OE2 ? A GLU 74 ? A GLU 74 ? 1_555 ZN L G ZN . ? A ZN 106 ? 1_555 O ? L HOH . ? A HOH 253 ? 1_555 128.7 ? 24 OE2 ? A GLU 39 ? A GLU 39 ? 1_555 ZN L F ZN . ? A ZN 105 ? 1_555 O ? L HOH . ? A HOH 261 ? 1_555 118.5 ? 25 OE2 ? A GLU 39 ? A GLU 39 ? 1_555 ZN L F ZN . ? A ZN 105 ? 1_555 O ? L HOH . ? A HOH 262 ? 2_646 105.8 ? 26 O ? L HOH . ? A HOH 261 ? 1_555 ZN L F ZN . ? A ZN 105 ? 1_555 O ? L HOH . ? A HOH 262 ? 2_646 102.1 ? 27 OD2 ? A ASP 41 ? A ASP 41 ? 1_555 ZN ? K ZN . ? A ZN 110 ? 1_555 O ? L HOH . ? A HOH 254 ? 2_656 123.9 ? 28 OD2 ? A ASP 41 ? A ASP 41 ? 1_555 ZN ? K ZN . ? A ZN 110 ? 1_555 O ? L HOH . ? A HOH 256 ? 1_555 95.3 ? 29 O ? L HOH . ? A HOH 254 ? 2_656 ZN ? K ZN . ? A ZN 110 ? 1_555 O ? L HOH . ? A HOH 256 ? 1_555 109.1 ? 30 OE1 ? A GLU 61 ? A GLU 61 ? 1_555 ZN L E ZN . ? A ZN 104 ? 1_555 N3 ? C IMD . ? A IMD 102 ? 1_555 113.0 ? 31 OE1 ? A GLU 61 ? A GLU 61 ? 1_555 ZN L E ZN . ? A ZN 104 ? 1_555 O ? L HOH . ? A HOH 202 ? 1_555 127.6 ? 32 N3 ? C IMD . ? A IMD 102 ? 1_555 ZN L E ZN . ? A ZN 104 ? 1_555 O ? L HOH . ? A HOH 202 ? 1_555 107.0 ? 33 OE1 ? A GLU 61 ? A GLU 61 ? 1_555 ZN L E ZN . ? A ZN 104 ? 1_555 O ? L HOH . ? A HOH 225 ? 1_555 112.3 ? 34 N3 ? C IMD . ? A IMD 102 ? 1_555 ZN L E ZN . ? A ZN 104 ? 1_555 O ? L HOH . ? A HOH 225 ? 1_555 103.4 ? 35 O ? L HOH . ? A HOH 202 ? 1_555 ZN L E ZN . ? A ZN 104 ? 1_555 O ? L HOH . ? A HOH 225 ? 1_555 88.8 ? 36 OE1 ? A GLU 84 ? A GLU 84 ? 1_555 ZN ? J ZN . ? A ZN 109 ? 1_555 OE2 ? A GLU 84 ? A GLU 84 ? 1_555 56.0 ? 37 OE1 ? A GLU 84 ? A GLU 84 ? 1_555 ZN ? J ZN . ? A ZN 109 ? 1_555 O ? L HOH . ? A HOH 223 ? 1_555 103.9 ? 38 OE2 ? A GLU 84 ? A GLU 84 ? 1_555 ZN ? J ZN . ? A ZN 109 ? 1_555 O ? L HOH . ? A HOH 223 ? 1_555 124.4 ? 39 OE1 ? A GLU 84 ? A GLU 84 ? 1_555 ZN ? J ZN . ? A ZN 109 ? 1_555 O ? L HOH . ? A HOH 250 ? 1_555 88.0 ? 40 OE2 ? A GLU 84 ? A GLU 84 ? 1_555 ZN ? J ZN . ? A ZN 109 ? 1_555 O ? L HOH . ? A HOH 250 ? 1_555 136.6 ? 41 O ? L HOH . ? A HOH 223 ? 1_555 ZN ? J ZN . ? A ZN 109 ? 1_555 O ? L HOH . ? A HOH 250 ? 1_555 84.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-29 2 'Structure model' 1 1 2021-11-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _pdbx_entry_details.entry_id 7DG7 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 A GLU 61 ? ? ZN A ZN 104 ? L 1.56 2 1 O A HOH 249 ? ? O A HOH 268 ? ? 2.06 3 1 O A HOH 225 ? ? O A HOH 241 ? ? 2.13 4 1 NE A ARG 90 ? ? O A HOH 201 ? ? 2.14 5 1 O A HOH 264 ? ? O A HOH 266 ? ? 2.14 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 205 ? ? 1_555 O A HOH 211 ? ? 2_747 2.12 2 1 O A HOH 205 ? ? 1_555 O A HOH 258 ? ? 2_747 2.13 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A PRO 2 ? A PRO 2 3 1 Y 1 A MET 3 ? A MET 3 4 1 Y 1 A PRO 4 ? A PRO 4 5 1 Y 1 A GLY 5 ? A GLY 5 6 1 Y 1 A GLU 92 ? A GLU 92 # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 18H01328 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 IMIDAZOLE IMD 3 'ZINC ION' ZN 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #