HEADER OXYGEN BINDING 12-NOV-20 7DGK TITLE THE CO-BOUND DIMERIC STRUCTURE OF K78H/G80A/H82A MYOGLOBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOGLOBIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 GENE: MB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXYGEN STORAGE, OXYGEN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.NAGAO,A.IDOMOTO,N.SHIBATA,Y.HIGUCHI,S.HIROTA REVDAT 3 29-NOV-23 7DGK 1 REMARK REVDAT 2 03-MAR-21 7DGK 1 JRNL REVDAT 1 17-FEB-21 7DGK 0 JRNL AUTH S.NAGAO,A.IDOMOTO,N.SHIBATA,Y.HIGUCHI,S.HIROTA JRNL TITL RATIONAL DESIGN OF METAL-BINDING SITES IN DOMAIN-SWAPPED JRNL TITL 2 MYOGLOBIN DIMERS. JRNL REF J.INORG.BIOCHEM. V. 217 11374 2021 JRNL REFN ISSN 0162-0134 JRNL PMID 33578251 JRNL DOI 10.1016/J.JINORGBIO.2021.111374 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1470 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2019 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.52000 REMARK 3 B22 (A**2) : -3.04000 REMARK 3 B33 (A**2) : 0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.005 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2582 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2403 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3469 ; 1.752 ; 1.694 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5582 ; 1.493 ; 1.618 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 5.898 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;40.081 ;24.595 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 452 ;16.207 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;14.895 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2856 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 519 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1227 ; 1.831 ; 2.730 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1225 ; 1.828 ; 2.724 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1532 ; 2.529 ; 4.080 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1532 ; 2.525 ; 4.081 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1355 ; 2.577 ; 3.003 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1339 ; 2.505 ; 2.991 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1937 ; 3.809 ; 4.332 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3071 ; 5.177 ;32.752 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3037 ; 5.143 ;32.451 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0065 -19.7170 -2.3476 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.1084 REMARK 3 T33: 0.0104 T12: 0.0108 REMARK 3 T13: -0.0043 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.1455 L22: 1.1439 REMARK 3 L33: 0.6235 L12: 0.3398 REMARK 3 L13: -0.2815 L23: -0.6815 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.0541 S13: 0.0079 REMARK 3 S21: 0.0205 S22: -0.0333 S23: 0.0095 REMARK 3 S31: -0.0247 S32: 0.1543 S33: -0.0137 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5063 -27.5674 -0.0563 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.1074 REMARK 3 T33: 0.0015 T12: 0.0105 REMARK 3 T13: -0.0046 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.1459 L22: 1.0011 REMARK 3 L33: 0.3669 L12: 0.1738 REMARK 3 L13: -0.2233 L23: -0.3824 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: -0.0277 S13: 0.0067 REMARK 3 S21: -0.0127 S22: 0.0427 S23: -0.0218 REMARK 3 S31: 0.0509 S32: 0.0590 S33: -0.0062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7DGK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300018252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29542 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 0.1 M TRIS-HCL, REMARK 280 25% (W/V) PEG 6,000, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.60100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.27650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.20450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.27650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.60100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.20450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 105 O HOH B 301 1.01 REMARK 500 OE1 GLU B 105 O HOH B 302 1.04 REMARK 500 OE2 GLU A 59 O HOH A 301 1.69 REMARK 500 CD GLU B 105 O HOH B 302 1.80 REMARK 500 CD GLU B 105 O HOH B 301 2.07 REMARK 500 NZ LYS A 79 OD2 ASP B 141 2.08 REMARK 500 OE2 GLU B 18 O HOH B 303 2.14 REMARK 500 O HOH A 340 O HOH A 344 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 67.28 -155.84 REMARK 500 PHE A 123 48.88 -158.03 REMARK 500 PHE B 123 50.38 -150.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 204 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD1 REMARK 620 2 ASP A 122 OD1 94.7 REMARK 620 3 HOH A 311 O 93.5 2.6 REMARK 620 4 HOH A 314 O 96.0 3.5 2.7 REMARK 620 5 HOH A 340 O 91.2 3.9 2.3 5.0 REMARK 620 6 HOH A 344 O 92.5 5.1 2.5 3.8 3.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 203 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 HOH A 305 O 76.8 REMARK 620 3 HIS B 81 NE2 90.9 90.9 REMARK 620 4 GLU B 85 OE2 103.0 165.8 103.3 REMARK 620 5 HOH B 315 O 90.8 81.6 171.7 84.2 REMARK 620 6 HOH B 319 O 166.3 92.0 97.3 85.8 79.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 203 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 81 NE2 REMARK 620 2 GLU A 85 OE1 92.5 REMARK 620 3 HIS B 78 NE2 88.5 109.6 REMARK 620 4 GLU B 105 OE1 40.9 78.3 58.9 REMARK 620 5 GLU B 105 OE2 38.8 76.1 62.6 3.8 REMARK 620 6 HOH B 301 O 92.8 171.8 76.8 109.7 111.8 REMARK 620 7 HOH B 302 O 96.0 89.4 160.3 133.2 129.8 83.8 REMARK 620 8 HOH B 327 O 175.1 90.4 86.8 136.3 138.7 84.9 88.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HEM A 201 NA 92.8 REMARK 620 3 HEM A 201 NB 89.7 88.7 REMARK 620 4 HEM A 201 NC 90.4 175.6 88.3 REMARK 620 5 HEM A 201 ND 94.3 89.2 175.7 93.5 REMARK 620 6 O B 201 O 176.1 91.0 90.9 85.7 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 O A 202 O REMARK 620 2 HEM B 202 NA 89.9 REMARK 620 3 HEM B 202 NB 85.5 87.4 REMARK 620 4 HEM B 202 NC 84.7 174.4 90.8 REMARK 620 5 HEM B 202 ND 88.3 89.3 173.0 91.9 REMARK 620 6 HIS B 93 NE2 176.5 91.4 91.3 94.0 94.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 204 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HOH B 320 O 85.0 REMARK 620 3 HOH B 336 O 90.2 81.1 REMARK 620 4 HOH B 343 O 92.5 93.9 174.2 REMARK 620 5 HOH B 369 O 100.8 173.5 95.9 88.6 REMARK 620 N 1 2 3 4 DBREF 7DGK A 1 153 UNP P68082 MYG_HORSE 2 154 DBREF 7DGK B 1 153 UNP P68082 MYG_HORSE 2 154 SEQADV 7DGK HIS A 78 UNP P68082 LYS 79 ENGINEERED MUTATION SEQADV 7DGK ALA A 80 UNP P68082 GLY 81 ENGINEERED MUTATION SEQADV 7DGK ALA A 82 UNP P68082 HIS 83 ENGINEERED MUTATION SEQADV 7DGK HIS B 78 UNP P68082 LYS 79 ENGINEERED MUTATION SEQADV 7DGK ALA B 80 UNP P68082 GLY 81 ENGINEERED MUTATION SEQADV 7DGK ALA B 82 UNP P68082 HIS 83 ENGINEERED MUTATION SEQRES 1 A 153 GLY LEU SER ASP GLY GLU TRP GLN GLN VAL LEU ASN VAL SEQRES 2 A 153 TRP GLY LYS VAL GLU ALA ASP ILE ALA GLY HIS GLY GLN SEQRES 3 A 153 GLU VAL LEU ILE ARG LEU PHE THR GLY HIS PRO GLU THR SEQRES 4 A 153 LEU GLU LYS PHE ASP LYS PHE LYS HIS LEU LYS THR GLU SEQRES 5 A 153 ALA GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS GLY SEQRES 6 A 153 THR VAL VAL LEU THR ALA LEU GLY GLY ILE LEU LYS HIS SEQRES 7 A 153 LYS ALA HIS ALA GLU ALA GLU LEU LYS PRO LEU ALA GLN SEQRES 8 A 153 SER HIS ALA THR LYS HIS LYS ILE PRO ILE LYS TYR LEU SEQRES 9 A 153 GLU PHE ILE SER ASP ALA ILE ILE HIS VAL LEU HIS SER SEQRES 10 A 153 LYS HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 A 153 MET THR LYS ALA LEU GLU LEU PHE ARG ASN ASP ILE ALA SEQRES 12 A 153 ALA LYS TYR LYS GLU LEU GLY PHE GLN GLY SEQRES 1 B 153 GLY LEU SER ASP GLY GLU TRP GLN GLN VAL LEU ASN VAL SEQRES 2 B 153 TRP GLY LYS VAL GLU ALA ASP ILE ALA GLY HIS GLY GLN SEQRES 3 B 153 GLU VAL LEU ILE ARG LEU PHE THR GLY HIS PRO GLU THR SEQRES 4 B 153 LEU GLU LYS PHE ASP LYS PHE LYS HIS LEU LYS THR GLU SEQRES 5 B 153 ALA GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS GLY SEQRES 6 B 153 THR VAL VAL LEU THR ALA LEU GLY GLY ILE LEU LYS HIS SEQRES 7 B 153 LYS ALA HIS ALA GLU ALA GLU LEU LYS PRO LEU ALA GLN SEQRES 8 B 153 SER HIS ALA THR LYS HIS LYS ILE PRO ILE LYS TYR LEU SEQRES 9 B 153 GLU PHE ILE SER ASP ALA ILE ILE HIS VAL LEU HIS SER SEQRES 10 B 153 LYS HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 B 153 MET THR LYS ALA LEU GLU LEU PHE ARG ASN ASP ILE ALA SEQRES 12 B 153 ALA LYS TYR LYS GLU LEU GLY PHE GLN GLY HET HEM A 201 43 HET O A 202 1 HET CO A 203 1 HET CO A 204 1 HET O B 201 1 HET HEM B 202 43 HET CO B 203 1 HET CO B 204 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM O OXYGEN ATOM HETNAM CO COBALT (II) ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 O 2(O) FORMUL 5 CO 4(CO 2+) FORMUL 11 HOH *184(H2 O) HELIX 1 AA1 SER A 3 ALA A 19 1 17 HELIX 2 AA2 ASP A 20 HIS A 36 1 17 HELIX 3 AA3 HIS A 36 LYS A 42 1 7 HELIX 4 AA4 THR A 51 SER A 58 1 8 HELIX 5 AA5 SER A 58 LYS A 96 1 39 HELIX 6 AA6 PRO A 100 HIS A 119 1 20 HELIX 7 AA7 PRO A 120 PHE A 123 5 4 HELIX 8 AA8 GLY A 124 LEU A 149 1 26 HELIX 9 AA9 SER B 3 ALA B 19 1 17 HELIX 10 AB1 ASP B 20 HIS B 36 1 17 HELIX 11 AB2 PRO B 37 PHE B 43 5 7 HELIX 12 AB3 THR B 51 SER B 58 1 8 HELIX 13 AB4 SER B 58 LYS B 96 1 39 HELIX 14 AB5 PRO B 100 HIS B 119 1 20 HELIX 15 AB6 PRO B 120 PHE B 123 5 4 HELIX 16 AB7 GLY B 124 LEU B 149 1 26 LINK OD1 ASP A 44 CO CO A 204 1555 3554 2.09 LINK NE2 HIS A 78 CO CO B 203 1555 1555 1.94 LINK NE2 HIS A 81 CO CO A 203 1555 1555 1.96 LINK OE1 GLU A 85 CO CO A 203 1555 1555 1.87 LINK NE2 HIS A 93 FE HEM A 201 1555 1555 1.93 LINK OD1 ASP A 122 CO CO A 204 1555 1555 1.89 LINK FE HEM A 201 O O B 201 1555 1555 2.03 LINK O O A 202 FE HEM B 202 1555 1555 2.01 LINK CO CO A 203 NE2 HIS B 78 1555 1555 1.95 LINK CO CO A 203 OE1BGLU B 105 4545 1555 2.63 LINK CO CO A 203 OE2BGLU B 105 4545 1555 2.43 LINK CO CO A 203 O HOH B 301 1555 4445 1.82 LINK CO CO A 203 O HOH B 302 1555 4445 1.81 LINK CO CO A 203 O HOH B 327 1555 1555 1.84 LINK CO CO A 204 O HOH A 311 1555 1555 1.87 LINK CO CO A 204 O HOH A 314 1555 1555 1.82 LINK CO CO A 204 O HOH A 340 1555 3544 1.84 LINK CO CO A 204 O HOH A 344 1555 3544 1.81 LINK O HOH A 305 CO CO B 203 1555 1555 1.75 LINK NE2 HIS B 81 CO CO B 203 1555 1555 1.96 LINK OE2 GLU B 85 CO CO B 203 1555 1555 1.81 LINK NE2 HIS B 93 FE HEM B 202 1555 1555 1.97 LINK NE2 HIS B 116 CO CO B 204 1555 1555 1.94 LINK CO CO B 203 O HOH B 315 1555 1555 1.83 LINK CO CO B 203 O HOH B 319 1555 1555 1.83 LINK CO CO B 204 O HOH B 320 1555 1555 1.82 LINK CO CO B 204 O HOH B 336 1555 1555 1.84 LINK CO CO B 204 O HOH B 343 1555 1555 1.83 LINK CO CO B 204 O HOH B 369 1555 1555 1.82 CRYST1 55.202 62.409 82.553 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018115 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012113 0.00000