HEADER CONTRACTILE PROTEIN 13-NOV-20 7DHB TITLE MUTANT V507M COILED COIL DOMAIN OF TRYPANOSOMA BRUCEI CORONIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CORONIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: COILED COIL DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CORONI COILED COLI DOMAIN, ACTIN BINDING CYTOSKELETON PROTEIN, KEYWDS 2 STRUCTURAL PROTEIN FORMING COMPLEX, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.S.PARIHAR,J.V.PRATAP REVDAT 2 29-NOV-23 7DHB 1 REMARK REVDAT 1 10-NOV-21 7DHB 0 JRNL AUTH P.S.PARIHAR,A.SINGH,S.S.KARADE,A.A.SAHASRABUDDHE,J.V.PRATAP JRNL TITL STRUCTURAL INSIGHTS INTO KINETOPLASTID CORONIN JRNL TITL 2 OLIGOMERIZATION DOMAIN AND F-ACTIN INTERACTION JRNL REF CURR RES STRUCT BIOL V. 3 268 2021 JRNL REFN ESSN 2665-928X JRNL DOI 10.1016/J.CRSTBI.2021.10.002 REMARK 2 REMARK 2 RESOLUTION. 3.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 3316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.220 REMARK 3 FREE R VALUE TEST SET COUNT : 140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.1280 - 3.0201 0.91 3176 140 0.2140 0.2586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 735 REMARK 3 ANGLE : 0.448 982 REMARK 3 CHIRALITY : 0.026 119 REMARK 3 PLANARITY : 0.001 124 REMARK 3 DIHEDRAL : 11.922 466 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DHB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3325 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.020 REMARK 200 RESOLUTION RANGE LOW (A) : 36.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.13 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 5CX2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 M NACL, 0.1M HEPESE 7.5, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.38000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.38000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.84000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.38000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 45.38000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 41.84000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.38000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 45.38000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 41.84000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 45.38000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.38000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 41.84000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 45.38000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.38000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 41.84000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.38000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 45.38000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 41.84000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 45.38000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 45.38000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 41.84000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.38000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.38000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 41.84000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 465 HIS A 524 REMARK 465 HIS A 525 REMARK 465 HIS B 525 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 495 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 501 CG CD OE1 NE2 REMARK 470 LYS A 502 CG CD CE NZ REMARK 470 HIS A 521 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 520 CG CD OE1 OE2 DBREF 7DHB A 477 518 UNP Q57W63 Q57W63_TRYB2 477 518 DBREF 7DHB B 477 518 UNP Q57W63 Q57W63_TRYB2 477 518 SEQADV 7DHB PHE A 476 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB MET A 507 UNP Q57W63 VAL 507 ENGINEERED MUTATION SEQADV 7DHB LEU A 519 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB GLU A 520 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB HIS A 521 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB HIS A 522 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB HIS A 523 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB HIS A 524 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB HIS A 525 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB PHE B 476 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB MET B 507 UNP Q57W63 VAL 507 ENGINEERED MUTATION SEQADV 7DHB LEU B 519 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB GLU B 520 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB HIS B 521 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB HIS B 522 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB HIS B 523 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB HIS B 524 UNP Q57W63 EXPRESSION TAG SEQADV 7DHB HIS B 525 UNP Q57W63 EXPRESSION TAG SEQRES 1 A 50 PHE SER GLN LEU LEU ALA LEU ALA SER LEU LEU GLY GLN SEQRES 2 A 50 GLN GLN ALA GLU VAL GLN ARG CYS ARG GLU ASP LEU GLN SEQRES 3 A 50 LYS LYS GLU SER LEU MET MET GLU THR ILE ALA LYS ILE SEQRES 4 A 50 LYS ALA LEU ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 1 B 50 PHE SER GLN LEU LEU ALA LEU ALA SER LEU LEU GLY GLN SEQRES 2 B 50 GLN GLN ALA GLU VAL GLN ARG CYS ARG GLU ASP LEU GLN SEQRES 3 B 50 LYS LYS GLU SER LEU MET MET GLU THR ILE ALA LYS ILE SEQRES 4 B 50 LYS ALA LEU ALA LEU GLU HIS HIS HIS HIS HIS FORMUL 3 HOH *5(H2 O) HELIX 1 AA1 PHE A 476 GLU A 520 1 45 HELIX 2 AA2 SER B 477 HIS B 523 1 47 CRYST1 90.760 90.760 83.680 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011018 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011950 0.00000