HEADER ENDOCYTOSIS 17-NOV-20 7DHT TITLE SOLUTION STRUCTURE OF ATG8F OF ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY-RELATED PROTEIN 8F; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AUTOPHAGY-RELATED UBIQUITIN-LIKE MODIFIER ATG8F,PROTEIN COMPND 5 AUTOPHAGY 8F; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ATG8F, APG8F; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS AUTOPHAGY, NMR1, SH3P2, ENDOCYTOSIS EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.M.LEE,S.L.SUN,K.B.WONG REVDAT 5 15-MAY-24 7DHT 1 REMARK REVDAT 4 14-JUN-23 7DHT 1 REMARK REVDAT 3 29-JUN-22 7DHT 1 JRNL REVDAT 2 01-JUN-22 7DHT 1 JRNL REVDAT 1 01-DEC-21 7DHT 0 JRNL AUTH S.SUN,L.FENG,K.P.CHUNG,K.M.LEE,H.H.CHEUNG,M.LUO,K.REN, JRNL AUTH 2 K.C.LAW,L.JIANG,K.B.WONG,X.ZHUANG JRNL TITL MECHANISTIC INSIGHTS INTO AN ATYPICAL INTERACTION BETWEEN JRNL TITL 2 ATG8 AND SH3P2 IN ARABIDOPSIS THALIANA. JRNL REF AUTOPHAGY V. 18 1350 2022 JRNL REFN ESSN 1554-8635 JRNL PMID 34657568 JRNL DOI 10.1080/15548627.2021.1976965 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019031. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.4; 7.4 REMARK 210 IONIC STRENGTH : 1X PBS; 1X PBS REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-15N] ATG8F, 90% REMARK 210 H2O/10% D2O; 0.3 MM [U-13C; U- REMARK 210 15N] ATG8F, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 4D HSQC- REMARK 210 NOESY-HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRPIPE, TOPSPIN, ARIA REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 9999 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 102.28 -166.25 REMARK 500 1 SER A 5 -76.71 176.25 REMARK 500 1 ASP A 11 63.06 -172.66 REMARK 500 1 TYR A 26 -50.44 155.84 REMARK 500 1 ASP A 41 39.84 -140.35 REMARK 500 1 THR A 44 -41.67 162.91 REMARK 500 1 LYS A 47 -79.96 -70.55 REMARK 500 1 LYS A 48 -123.85 39.13 REMARK 500 1 ARG A 66 21.72 45.58 REMARK 500 1 LYS A 67 43.98 31.38 REMARK 500 1 LYS A 70 13.07 54.35 REMARK 500 1 ALA A 73 -77.30 -58.42 REMARK 500 1 PRO A 86 164.86 -39.76 REMARK 500 1 ALA A 88 59.22 34.86 REMARK 500 1 ALA A 90 -100.13 -58.05 REMARK 500 1 LEU A 91 94.06 -178.88 REMARK 500 1 SER A 93 -79.21 -73.51 REMARK 500 1 LYS A 99 -54.55 -134.66 REMARK 500 1 ASP A 103 -28.77 176.21 REMARK 500 1 ASN A 114 35.34 31.13 REMARK 500 1 THR A 115 -75.06 -80.82 REMARK 500 1 PHE A 118 -78.73 -97.42 REMARK 500 2 LYS A 3 172.20 58.71 REMARK 500 2 SER A 4 102.04 -167.29 REMARK 500 2 SER A 5 -63.64 179.32 REMARK 500 2 GLU A 9 -64.66 -130.75 REMARK 500 2 HIS A 10 -174.29 -58.08 REMARK 500 2 TYR A 26 -50.38 155.00 REMARK 500 2 ILE A 30 108.67 -58.33 REMARK 500 2 ILE A 42 59.74 -142.60 REMARK 500 2 THR A 44 -44.71 161.41 REMARK 500 2 LYS A 47 -80.27 -74.44 REMARK 500 2 LYS A 48 -121.71 33.44 REMARK 500 2 ARG A 66 17.79 45.44 REMARK 500 2 LYS A 67 34.48 33.49 REMARK 500 2 LYS A 70 11.51 54.62 REMARK 500 2 ALA A 73 -78.21 -54.54 REMARK 500 2 PRO A 86 164.22 -38.64 REMARK 500 2 ALA A 88 59.85 34.59 REMARK 500 2 ALA A 90 -99.95 -58.05 REMARK 500 2 LEU A 91 93.93 -178.31 REMARK 500 2 SER A 93 -81.03 -72.73 REMARK 500 2 LYS A 99 -52.18 -136.49 REMARK 500 2 ASP A 101 105.60 -163.56 REMARK 500 2 ASP A 103 -45.12 -179.43 REMARK 500 2 ASN A 114 36.34 36.61 REMARK 500 3 ALA A 2 -65.57 -108.59 REMARK 500 3 SER A 4 101.82 -160.63 REMARK 500 3 SER A 5 -55.71 179.46 REMARK 500 3 ASP A 11 69.87 -174.38 REMARK 500 REMARK 500 THIS ENTRY HAS 230 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36397 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF ATG8F OF ARABIDOPSIS THALIANA DBREF 7DHT A 1 121 UNP Q8VYK7 ATG8F_ARATH 1 121 SEQRES 1 A 121 MET ALA LYS SER SER PHE LYS GLN GLU HIS ASP LEU GLU SEQRES 2 A 121 LYS ARG ARG ALA GLU ALA ALA ARG ILE ARG GLU LYS TYR SEQRES 3 A 121 PRO ASP ARG ILE PRO VAL ILE VAL GLU LYS ALA GLU LYS SEQRES 4 A 121 SER ASP ILE PRO THR ILE ASP LYS LYS LYS TYR LEU VAL SEQRES 5 A 121 PRO ALA ASP LEU THR VAL GLY GLN PHE VAL TYR VAL ILE SEQRES 6 A 121 ARG LYS ARG ILE LYS LEU SER ALA GLU LYS ALA ILE PHE SEQRES 7 A 121 ILE PHE VAL ASP ASN VAL LEU PRO PRO ALA GLY ALA LEU SEQRES 8 A 121 MET SER SER VAL TYR GLU GLU LYS LYS ASP ASP ASP GLY SEQRES 9 A 121 PHE LEU TYR VAL THR TYR SER GLY GLU ASN THR PHE GLY SEQRES 10 A 121 PHE GLY SER PRO HELIX 1 AA1 ASP A 11 TYR A 26 1 16 HELIX 2 AA2 THR A 57 ARG A 66 1 10 HELIX 3 AA3 LEU A 91 LYS A 99 1 9 SHEET 1 AA1 3 TYR A 50 PRO A 53 0 SHEET 2 AA1 3 ARG A 29 ILE A 33 -1 N ILE A 30 O VAL A 52 SHEET 3 AA1 3 LEU A 106 TYR A 107 1 O LEU A 106 N PRO A 31 SHEET 1 AA2 2 PHE A 78 ILE A 79 0 SHEET 2 AA2 2 TYR A 110 SER A 111 -1 O SER A 111 N PHE A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1