HEADER DE NOVO PROTEIN 24-NOV-20 7DKK TITLE DE NOVO DESIGN PROTEIN XM2H COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGN PROTEIN XM2H; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS MONOMER, FERREDOXIN-LIKE, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.BIN REVDAT 4 02-MAR-22 7DKK 1 JRNL REVDAT 3 23-FEB-22 7DKK 1 JRNL REVDAT 2 16-FEB-22 7DKK 1 JRNL REVDAT 1 08-DEC-21 7DKK 0 JRNL AUTH B.HUANG,Y.XU,X.HU,Y.LIU,S.LIAO,J.ZHANG,C.HUANG,J.HONG, JRNL AUTH 2 Q.CHEN,H.LIU JRNL TITL A BACKBONE-CENTRED ENERGY FUNCTION OF NEURAL NETWORKS FOR JRNL TITL 2 PROTEIN DESIGN. JRNL REF NATURE V. 602 523 2022 JRNL REFN ESSN 1476-4687 JRNL PMID 35140398 JRNL DOI 10.1038/S41586-021-04383-5 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 23355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 13.0240 - 4.3205 1.00 2635 152 0.1774 0.2180 REMARK 3 2 4.3205 - 3.4503 1.00 2593 130 0.1892 0.2174 REMARK 3 3 3.4503 - 3.0204 0.99 2582 123 0.2206 0.2580 REMARK 3 4 3.0204 - 2.7471 0.97 2518 138 0.2562 0.3131 REMARK 3 5 2.7471 - 2.5518 0.96 2463 127 0.2592 0.2835 REMARK 3 6 2.5518 - 2.4023 0.94 2392 148 0.2707 0.3325 REMARK 3 7 2.4023 - 2.2827 0.92 2362 125 0.2840 0.3562 REMARK 3 8 2.2827 - 2.1838 0.90 2362 120 0.3093 0.3105 REMARK 3 9 2.1838 - 2.1001 0.89 2255 130 0.3329 0.3838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2644 REMARK 3 ANGLE : 0.938 3577 REMARK 3 CHIRALITY : 0.053 436 REMARK 3 PLANARITY : 0.006 453 REMARK 3 DIHEDRAL : 18.741 1615 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 89) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6604 44.4563 56.6601 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.2545 REMARK 3 T33: 0.3035 T12: -0.0123 REMARK 3 T13: 0.0382 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.9110 L22: 3.2019 REMARK 3 L33: 4.3244 L12: 0.0605 REMARK 3 L13: -1.2781 L23: 1.1087 REMARK 3 S TENSOR REMARK 3 S11: 0.3642 S12: -0.1262 S13: 0.3476 REMARK 3 S21: -0.1972 S22: 0.1465 S23: -0.2052 REMARK 3 S31: -0.6321 S32: -0.2429 S33: -0.4554 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 89) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9375 27.9037 65.6666 REMARK 3 T TENSOR REMARK 3 T11: 0.3210 T22: 0.5413 REMARK 3 T33: 0.2213 T12: -0.0819 REMARK 3 T13: -0.0313 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.0792 L22: 3.5470 REMARK 3 L33: 1.6892 L12: 1.9369 REMARK 3 L13: 0.0203 L23: -0.2860 REMARK 3 S TENSOR REMARK 3 S11: 0.3733 S12: -0.5579 S13: 0.0680 REMARK 3 S21: 0.7719 S22: -0.6363 S23: -0.1450 REMARK 3 S31: 0.0533 S32: 0.1210 S33: 0.2095 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1 THROUGH 89) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2717 17.5308 50.1185 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.1597 REMARK 3 T33: 0.2077 T12: 0.0124 REMARK 3 T13: 0.0182 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.8408 L22: 2.3153 REMARK 3 L33: 3.8926 L12: 0.1041 REMARK 3 L13: 1.0569 L23: -0.0187 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: -0.2047 S13: -0.0858 REMARK 3 S21: 0.0668 S22: 0.1157 S23: -0.0734 REMARK 3 S31: 0.0832 S32: -0.1000 S33: -0.1803 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 89) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2638 34.1187 39.0256 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.1688 REMARK 3 T33: 0.2559 T12: -0.0182 REMARK 3 T13: -0.0335 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.0681 L22: 2.6270 REMARK 3 L33: 1.7350 L12: -1.2332 REMARK 3 L13: -1.2155 L23: -0.6520 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: 0.0800 S13: -0.0842 REMARK 3 S21: -0.0502 S22: -0.0095 S23: 0.3510 REMARK 3 S31: 0.1161 S32: -0.1646 S33: -0.0469 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 2:10 OR RESSEQ 12 OR REMARK 3 (RESID 13 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME C OR NAME O )) OR RESSEQ 14:20 REMARK 3 OR RESSEQ 22:25 OR RESSEQ 27:34 OR RESSEQ REMARK 3 36:51 OR (RESID 52 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 53:56 OR RESSEQ 58:60 OR RESSEQ 63: REMARK 3 64 OR RESSEQ 66:72 OR RESSEQ 74:89)) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 2:10 OR RESSEQ 12:20 REMARK 3 OR RESSEQ 22:25 OR RESSEQ 27:34 OR RESSEQ REMARK 3 36:51 OR (RESID 52 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 53:56 OR RESSEQ 58:60 OR RESSEQ 63: REMARK 3 64 OR RESSEQ 66:72 OR RESSEQ 74:89)) REMARK 3 ATOM PAIRS NUMBER : 1219 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 2:10 OR RESSEQ 12 OR REMARK 3 (RESID 13 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME C OR NAME O )) OR RESSEQ 14:20 REMARK 3 OR RESSEQ 22:25 OR RESSEQ 27:34 OR RESSEQ REMARK 3 36:51 OR (RESID 52 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 53:56 OR RESSEQ 58:60 OR RESSEQ 63: REMARK 3 64 OR RESSEQ 66:72 OR RESSEQ 74:89)) REMARK 3 SELECTION : (CHAIN C AND (RESSEQ 2:10 OR RESSEQ 12 OR REMARK 3 (RESID 13 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME C OR NAME O )) OR RESSEQ 14:20 REMARK 3 OR RESSEQ 22:25 OR RESSEQ 27:34 OR RESSEQ REMARK 3 36:56 OR RESSEQ 58:60 OR RESSEQ 63:64 OR REMARK 3 RESSEQ 66:72 OR RESSEQ 74:89)) REMARK 3 ATOM PAIRS NUMBER : 1219 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 2:10 OR RESSEQ 12 OR REMARK 3 (RESID 13 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME C OR NAME O )) OR RESSEQ 14:20 REMARK 3 OR RESSEQ 22:25 OR RESSEQ 27:34 OR RESSEQ REMARK 3 36:51 OR (RESID 52 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 53:56 OR RESSEQ 58:60 OR RESSEQ 63: REMARK 3 64 OR RESSEQ 66:72 OR RESSEQ 74:89)) REMARK 3 SELECTION : (CHAIN D AND (RESSEQ 2:10 OR RESSEQ 12 OR REMARK 3 (RESID 13 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME C OR NAME O )) OR RESSEQ 14:20 REMARK 3 OR RESSEQ 22:25 OR RESSEQ 27:34 OR RESSEQ REMARK 3 36:56 OR RESSEQ 58:60 OR RESSEQ 63:64 OR REMARK 3 RESSEQ 66:72 OR RESSEQ 74:89)) REMARK 3 ATOM PAIRS NUMBER : 1219 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5406 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 13.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M SODIUM CHLORIDE, 10%W/V REMARK 280 POLYETHYLENE GLYCOL 6000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.85600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 GLU C 52 CG CD OE1 OE2 REMARK 470 LYS C 61 CG CD CE NZ REMARK 470 GLU D 52 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 58 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 42 145.07 -172.45 REMARK 500 GLU A 52 -171.75 -65.34 REMARK 500 ARG B 11 32.31 -90.07 REMARK 500 ALA B 42 141.96 -171.47 REMARK 500 ASN D 43 -128.34 57.25 REMARK 500 REMARK 500 REMARK: NULL DBREF 7DKK A 1 89 PDB 7DKK 7DKK 1 89 DBREF 7DKK B 1 89 PDB 7DKK 7DKK 1 89 DBREF 7DKK C 1 89 PDB 7DKK 7DKK 1 89 DBREF 7DKK D 1 89 PDB 7DKK 7DKK 1 89 SEQRES 1 A 89 MET HIS SER TRP SER ALA THR VAL ASP SER ARG SER GLU SEQRES 2 A 89 GLU ALA VAL ARG ALA ALA ALA ARG ARG LEU ALA GLU ARG SEQRES 3 A 89 LEU LEU ALA ALA GLY ILE SER GLY LYS ILE LYS ILE GLU SEQRES 4 A 89 VAL GLU ALA ASN GLY ILE LYS TYR GLU TYR GLU VAL GLU SEQRES 5 A 89 GLY PRO ALA THR GLU GLU VAL ALA LYS LYS ILE VAL GLU SEQRES 6 A 89 TYR ALA VAL ALA ALA ALA LEU ARG ALA ILE ALA ALA GLY SEQRES 7 A 89 ALA THR SER VAL THR ILE THR VAL GLY LEU GLU SEQRES 1 B 89 MET HIS SER TRP SER ALA THR VAL ASP SER ARG SER GLU SEQRES 2 B 89 GLU ALA VAL ARG ALA ALA ALA ARG ARG LEU ALA GLU ARG SEQRES 3 B 89 LEU LEU ALA ALA GLY ILE SER GLY LYS ILE LYS ILE GLU SEQRES 4 B 89 VAL GLU ALA ASN GLY ILE LYS TYR GLU TYR GLU VAL GLU SEQRES 5 B 89 GLY PRO ALA THR GLU GLU VAL ALA LYS LYS ILE VAL GLU SEQRES 6 B 89 TYR ALA VAL ALA ALA ALA LEU ARG ALA ILE ALA ALA GLY SEQRES 7 B 89 ALA THR SER VAL THR ILE THR VAL GLY LEU GLU SEQRES 1 C 89 MET HIS SER TRP SER ALA THR VAL ASP SER ARG SER GLU SEQRES 2 C 89 GLU ALA VAL ARG ALA ALA ALA ARG ARG LEU ALA GLU ARG SEQRES 3 C 89 LEU LEU ALA ALA GLY ILE SER GLY LYS ILE LYS ILE GLU SEQRES 4 C 89 VAL GLU ALA ASN GLY ILE LYS TYR GLU TYR GLU VAL GLU SEQRES 5 C 89 GLY PRO ALA THR GLU GLU VAL ALA LYS LYS ILE VAL GLU SEQRES 6 C 89 TYR ALA VAL ALA ALA ALA LEU ARG ALA ILE ALA ALA GLY SEQRES 7 C 89 ALA THR SER VAL THR ILE THR VAL GLY LEU GLU SEQRES 1 D 89 MET HIS SER TRP SER ALA THR VAL ASP SER ARG SER GLU SEQRES 2 D 89 GLU ALA VAL ARG ALA ALA ALA ARG ARG LEU ALA GLU ARG SEQRES 3 D 89 LEU LEU ALA ALA GLY ILE SER GLY LYS ILE LYS ILE GLU SEQRES 4 D 89 VAL GLU ALA ASN GLY ILE LYS TYR GLU TYR GLU VAL GLU SEQRES 5 D 89 GLY PRO ALA THR GLU GLU VAL ALA LYS LYS ILE VAL GLU SEQRES 6 D 89 TYR ALA VAL ALA ALA ALA LEU ARG ALA ILE ALA ALA GLY SEQRES 7 D 89 ALA THR SER VAL THR ILE THR VAL GLY LEU GLU FORMUL 5 HOH *37(H2 O) HELIX 1 AA1 SER A 12 GLY A 31 1 20 HELIX 2 AA2 THR A 56 ALA A 77 1 22 HELIX 3 AA3 SER B 12 GLY B 31 1 20 HELIX 4 AA4 THR B 56 ALA B 77 1 22 HELIX 5 AA5 SER C 12 ALA C 30 1 19 HELIX 6 AA6 THR C 56 ALA C 77 1 22 HELIX 7 AA7 SER D 12 GLY D 31 1 20 HELIX 8 AA8 THR D 56 ALA D 77 1 22 SHEET 1 AA116 ILE A 45 VAL A 51 0 SHEET 2 AA116 ILE A 36 ALA A 42 -1 N VAL A 40 O TYR A 47 SHEET 3 AA116 VAL A 82 LEU A 88 -1 O GLY A 87 N LYS A 37 SHEET 4 AA116 HIS A 2 VAL A 8 -1 N VAL A 8 O VAL A 82 SHEET 5 AA116 ILE D 45 VAL D 51 -1 O GLU D 48 N SER A 3 SHEET 6 AA116 LYS D 35 ALA D 42 -1 N VAL D 40 O TYR D 47 SHEET 7 AA116 VAL D 82 GLU D 89 -1 O GLY D 87 N LYS D 37 SHEET 8 AA116 HIS D 2 VAL D 8 -1 N HIS D 2 O LEU D 88 SHEET 9 AA116 ILE C 45 VAL C 51 -1 N GLU C 48 O SER D 3 SHEET 10 AA116 LYS C 35 ALA C 42 -1 N VAL C 40 O TYR C 47 SHEET 11 AA116 VAL C 82 GLU C 89 -1 O GLY C 87 N LYS C 37 SHEET 12 AA116 HIS C 2 VAL C 8 -1 N ALA C 6 O ILE C 84 SHEET 13 AA116 ILE B 45 VAL B 51 -1 N LYS B 46 O SER C 5 SHEET 14 AA116 LYS B 35 ALA B 42 -1 N ILE B 36 O VAL B 51 SHEET 15 AA116 VAL B 82 GLU B 89 -1 O GLY B 87 N LYS B 37 SHEET 16 AA116 HIS B 2 VAL B 8 -1 N TRP B 4 O VAL B 86 CISPEP 1 GLY A 53 PRO A 54 0 9.33 CISPEP 2 GLY B 53 PRO B 54 0 -3.33 CISPEP 3 GLY C 53 PRO C 54 0 2.19 CRYST1 48.192 63.712 70.742 90.00 101.62 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020751 0.000000 0.004266 0.00000 SCALE2 0.000000 0.015696 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014431 0.00000