HEADER OXIDOREDUCTASE 25-NOV-20 7DKP TITLE CRYSTAL STRUCTURE OF E. COLI GRX2 IN COMPLEX WITH GSH AT 1.45 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: GLUTAREDOXIN 2 (GRX2),GLUTAREDOXIN GLUTAREDOXIN, COMPND 5 GLUTAREDOXIN,GRXB FAMILY,GLUTAREDOXIN-2,GLUTAREDOXIN-2 GRX2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OXIDOREDUCTASE, E. COLI GRX2, GSH EXPDTA X-RAY DIFFRACTION AUTHOR S.N.SREEKUMAR,A.AROCKIASAMY REVDAT 2 29-NOV-23 7DKP 1 REMARK REVDAT 1 08-DEC-21 7DKP 0 JRNL AUTH S.N.SREEKUMAR,A.AROCKIASAMY JRNL TITL CRYSTAL STRUCTURE OF E. COLI GRX2 IN COMPLEX WITH GSH AT JRNL TITL 2 1.45 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 131485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6877 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9397 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 515 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6813 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 119 REMARK 3 SOLVENT ATOMS : 1314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.027 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7158 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6841 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9704 ; 1.881 ; 1.661 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15903 ; 1.687 ; 1.599 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 890 ; 6.557 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 350 ;33.579 ;22.914 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1290 ;11.312 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.072 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 938 ; 0.333 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7900 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1392 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7DKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300018764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 (BUILT REMARK 200 20200131) REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 137631 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.449 REMARK 200 RESOLUTION RANGE LOW (A) : 42.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.63500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KX4 REMARK 200 REMARK 200 REMARK: 2D PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 25MG/ML IN 25MM TRIS REMARK 280 PH 8.0, 150 MM NACL, 20 MM GSH, 10 MM DHA RESERVOIR CONDITION: REMARK 280 0.2M AMMONIUM ACETATE, 0.1M SODIUM CITRATE TRIBASIC DIHYDRATE PH REMARK 280 5.6, 30% W/V POLYETHYLENE GLYCOL 4,000. PROTEIN AND RESERVOIR REMARK 280 MIXED IN 1:1, 1:2 AND 2:1 RATIO, SET UP USING MRC SWISSCI 3 WELL REMARK 280 PLATES WITH DROP SIZE OF 150 NL., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 84.72550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 75 CE NZ REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 LYS C 156 CE NZ REMARK 470 GLU D 37 CG CD OE1 OE2 REMARK 470 LYS D 75 CG CD CE NZ REMARK 470 ARG D 91 CZ NH1 NH2 REMARK 470 LYS D 203 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 71 CE NZ REMARK 480 ARG A 152 NH1 REMARK 480 LYS B 71 NZ REMARK 480 LYS B 125 NZ REMARK 480 ARG C 41 CZ REMARK 480 LYS C 71 CE NZ REMARK 480 GLU C 88 OE2 REMARK 480 ARG C 91 NH1 REMARK 480 LYS C 203 NZ REMARK 480 LYS D 71 NZ REMARK 480 ARG D 193 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 107 O HOH B 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 27 CD GLU A 27 OE2 -0.073 REMARK 500 GLU A 87 CD GLU A 87 OE1 -0.095 REMARK 500 ARG A 152 CZ ARG A 152 NH1 -0.180 REMARK 500 GLU B 27 CD GLU B 27 OE2 -0.068 REMARK 500 GLU B 87 CD GLU B 87 OE1 -0.067 REMARK 500 ARG C 41 CZ ARG C 41 NH1 0.228 REMARK 500 GLU C 127 CD GLU C 127 OE2 -0.069 REMARK 500 ARG D 193 CZ ARG D 193 NH2 0.424 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 152 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 16 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG C 41 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG C 91 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG C 91 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG D 193 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG D 193 NE - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 56 -9.99 90.72 REMARK 500 SER A 56 -5.64 87.48 REMARK 500 GLU A 61 104.41 88.01 REMARK 500 TYR A 96 -12.09 -145.09 REMARK 500 ALA A 163 118.99 -167.74 REMARK 500 SER B 56 -4.38 88.67 REMARK 500 SER B 56 -7.49 90.88 REMARK 500 GLU B 61 108.27 87.28 REMARK 500 TYR B 96 -8.99 -144.03 REMARK 500 GLU C 61 108.20 81.87 REMARK 500 TYR C 96 -6.15 -141.62 REMARK 500 SER D 56 -3.49 87.15 REMARK 500 SER D 56 -8.43 90.85 REMARK 500 GLU D 61 108.62 89.04 REMARK 500 TYR D 96 -14.97 -140.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS C 92 -11.46 REMARK 500 LYS C 92 -11.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 715 DISTANCE = 6.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC D 302 DBREF 7DKP A 1 215 UNP C3TEC2 C3TEC2_ECOLX 1 215 DBREF 7DKP B 1 215 UNP C3TEC2 C3TEC2_ECOLX 1 215 DBREF 7DKP C 1 215 UNP C3TEC2 C3TEC2_ECOLX 1 215 DBREF 7DKP D 1 215 UNP C3TEC2 C3TEC2_ECOLX 1 215 SEQRES 1 A 215 MET LYS LEU TYR ILE TYR ASP HIS CYS PRO TYR CYS LEU SEQRES 2 A 215 LYS ALA ARG MET ILE PHE GLY LEU LYS ASN ILE PRO VAL SEQRES 3 A 215 GLU LEU HIS VAL LEU LEU ASN ASP ASP ALA GLU THR PRO SEQRES 4 A 215 THR ARG MET VAL GLY GLN LYS GLN VAL PRO ILE LEU GLN SEQRES 5 A 215 LYS ASP ASP SER ARG TYR MET PRO GLU SER MET ASP ILE SEQRES 6 A 215 VAL HIS TYR VAL ASP LYS LEU ASP GLY LYS PRO LEU LEU SEQRES 7 A 215 THR GLY LYS ARG SER PRO ALA ILE GLU GLU TRP LEU ARG SEQRES 8 A 215 LYS VAL ASN GLY TYR ALA ASN LYS LEU LEU LEU PRO ARG SEQRES 9 A 215 PHE ALA LYS SER ALA PHE ASP GLU PHE SER THR PRO ALA SEQRES 10 A 215 ALA ARG LYS TYR PHE VAL ASP LYS LYS GLU ALA SER ALA SEQRES 11 A 215 GLY ASN PHE ALA ASP LEU LEU ALA HIS SER ASP GLY LEU SEQRES 12 A 215 ILE LYS ASN ILE SER ASP ASP LEU ARG ALA LEU ASP LYS SEQRES 13 A 215 LEU ILE VAL LYS PRO ASN ALA VAL ASN GLY GLU LEU SER SEQRES 14 A 215 GLU ASP ASP ILE GLN LEU PHE PRO LEU LEU ARG ASN LEU SEQRES 15 A 215 THR LEU VAL ALA GLY ILE ASN TRP PRO SER ARG VAL ALA SEQRES 16 A 215 ASP TYR ARG ASP ASN MET ALA LYS GLN THR GLN ILE ASN SEQRES 17 A 215 LEU LEU SER SER MET ALA ILE SEQRES 1 B 215 MET LYS LEU TYR ILE TYR ASP HIS CYS PRO TYR CYS LEU SEQRES 2 B 215 LYS ALA ARG MET ILE PHE GLY LEU LYS ASN ILE PRO VAL SEQRES 3 B 215 GLU LEU HIS VAL LEU LEU ASN ASP ASP ALA GLU THR PRO SEQRES 4 B 215 THR ARG MET VAL GLY GLN LYS GLN VAL PRO ILE LEU GLN SEQRES 5 B 215 LYS ASP ASP SER ARG TYR MET PRO GLU SER MET ASP ILE SEQRES 6 B 215 VAL HIS TYR VAL ASP LYS LEU ASP GLY LYS PRO LEU LEU SEQRES 7 B 215 THR GLY LYS ARG SER PRO ALA ILE GLU GLU TRP LEU ARG SEQRES 8 B 215 LYS VAL ASN GLY TYR ALA ASN LYS LEU LEU LEU PRO ARG SEQRES 9 B 215 PHE ALA LYS SER ALA PHE ASP GLU PHE SER THR PRO ALA SEQRES 10 B 215 ALA ARG LYS TYR PHE VAL ASP LYS LYS GLU ALA SER ALA SEQRES 11 B 215 GLY ASN PHE ALA ASP LEU LEU ALA HIS SER ASP GLY LEU SEQRES 12 B 215 ILE LYS ASN ILE SER ASP ASP LEU ARG ALA LEU ASP LYS SEQRES 13 B 215 LEU ILE VAL LYS PRO ASN ALA VAL ASN GLY GLU LEU SER SEQRES 14 B 215 GLU ASP ASP ILE GLN LEU PHE PRO LEU LEU ARG ASN LEU SEQRES 15 B 215 THR LEU VAL ALA GLY ILE ASN TRP PRO SER ARG VAL ALA SEQRES 16 B 215 ASP TYR ARG ASP ASN MET ALA LYS GLN THR GLN ILE ASN SEQRES 17 B 215 LEU LEU SER SER MET ALA ILE SEQRES 1 C 215 MET LYS LEU TYR ILE TYR ASP HIS CYS PRO TYR CYS LEU SEQRES 2 C 215 LYS ALA ARG MET ILE PHE GLY LEU LYS ASN ILE PRO VAL SEQRES 3 C 215 GLU LEU HIS VAL LEU LEU ASN ASP ASP ALA GLU THR PRO SEQRES 4 C 215 THR ARG MET VAL GLY GLN LYS GLN VAL PRO ILE LEU GLN SEQRES 5 C 215 LYS ASP ASP SER ARG TYR MET PRO GLU SER MET ASP ILE SEQRES 6 C 215 VAL HIS TYR VAL ASP LYS LEU ASP GLY LYS PRO LEU LEU SEQRES 7 C 215 THR GLY LYS ARG SER PRO ALA ILE GLU GLU TRP LEU ARG SEQRES 8 C 215 LYS VAL ASN GLY TYR ALA ASN LYS LEU LEU LEU PRO ARG SEQRES 9 C 215 PHE ALA LYS SER ALA PHE ASP GLU PHE SER THR PRO ALA SEQRES 10 C 215 ALA ARG LYS TYR PHE VAL ASP LYS LYS GLU ALA SER ALA SEQRES 11 C 215 GLY ASN PHE ALA ASP LEU LEU ALA HIS SER ASP GLY LEU SEQRES 12 C 215 ILE LYS ASN ILE SER ASP ASP LEU ARG ALA LEU ASP LYS SEQRES 13 C 215 LEU ILE VAL LYS PRO ASN ALA VAL ASN GLY GLU LEU SER SEQRES 14 C 215 GLU ASP ASP ILE GLN LEU PHE PRO LEU LEU ARG ASN LEU SEQRES 15 C 215 THR LEU VAL ALA GLY ILE ASN TRP PRO SER ARG VAL ALA SEQRES 16 C 215 ASP TYR ARG ASP ASN MET ALA LYS GLN THR GLN ILE ASN SEQRES 17 C 215 LEU LEU SER SER MET ALA ILE SEQRES 1 D 215 MET LYS LEU TYR ILE TYR ASP HIS CYS PRO TYR CYS LEU SEQRES 2 D 215 LYS ALA ARG MET ILE PHE GLY LEU LYS ASN ILE PRO VAL SEQRES 3 D 215 GLU LEU HIS VAL LEU LEU ASN ASP ASP ALA GLU THR PRO SEQRES 4 D 215 THR ARG MET VAL GLY GLN LYS GLN VAL PRO ILE LEU GLN SEQRES 5 D 215 LYS ASP ASP SER ARG TYR MET PRO GLU SER MET ASP ILE SEQRES 6 D 215 VAL HIS TYR VAL ASP LYS LEU ASP GLY LYS PRO LEU LEU SEQRES 7 D 215 THR GLY LYS ARG SER PRO ALA ILE GLU GLU TRP LEU ARG SEQRES 8 D 215 LYS VAL ASN GLY TYR ALA ASN LYS LEU LEU LEU PRO ARG SEQRES 9 D 215 PHE ALA LYS SER ALA PHE ASP GLU PHE SER THR PRO ALA SEQRES 10 D 215 ALA ARG LYS TYR PHE VAL ASP LYS LYS GLU ALA SER ALA SEQRES 11 D 215 GLY ASN PHE ALA ASP LEU LEU ALA HIS SER ASP GLY LEU SEQRES 12 D 215 ILE LYS ASN ILE SER ASP ASP LEU ARG ALA LEU ASP LYS SEQRES 13 D 215 LEU ILE VAL LYS PRO ASN ALA VAL ASN GLY GLU LEU SER SEQRES 14 D 215 GLU ASP ASP ILE GLN LEU PHE PRO LEU LEU ARG ASN LEU SEQRES 15 D 215 THR LEU VAL ALA GLY ILE ASN TRP PRO SER ARG VAL ALA SEQRES 16 D 215 ASP TYR ARG ASP ASN MET ALA LYS GLN THR GLN ILE ASN SEQRES 17 D 215 LEU LEU SER SER MET ALA ILE HET GSH A 301 20 HET FLC A 302 13 HET GSH B 301 20 HET FLC B 302 13 HET GSH C 301 20 HET GSH D 301 20 HET FLC D 302 13 HETNAM GSH GLUTATHIONE HETNAM FLC CITRATE ANION FORMUL 5 GSH 4(C10 H17 N3 O6 S) FORMUL 6 FLC 3(C6 H5 O7 3-) FORMUL 12 HOH *1314(H2 O) HELIX 1 AA1 CYS A 9 LYS A 22 1 14 HELIX 2 AA2 ALA A 36 GLY A 44 1 9 HELIX 3 AA3 GLU A 61 LEU A 72 1 12 HELIX 4 AA4 SER A 83 GLY A 95 1 13 HELIX 5 AA5 ALA A 97 SER A 108 1 12 HELIX 6 AA6 PHE A 110 SER A 114 5 5 HELIX 7 AA7 THR A 115 GLY A 131 1 17 HELIX 8 AA8 ASN A 132 HIS A 139 1 8 HELIX 9 AA9 HIS A 139 LYS A 156 1 18 HELIX 10 AB1 SER A 169 THR A 183 1 15 HELIX 11 AB2 PRO A 191 GLN A 206 1 16 HELIX 12 AB3 LEU A 210 ALA A 214 5 5 HELIX 13 AB4 CYS B 9 ASN B 23 1 15 HELIX 14 AB5 ALA B 36 GLY B 44 1 9 HELIX 15 AB6 GLU B 61 LEU B 72 1 12 HELIX 16 AB7 SER B 83 GLY B 95 1 13 HELIX 17 AB8 ALA B 97 SER B 108 1 12 HELIX 18 AB9 PHE B 110 SER B 114 5 5 HELIX 19 AC1 THR B 115 GLY B 131 1 17 HELIX 20 AC2 ASN B 132 HIS B 139 1 8 HELIX 21 AC3 HIS B 139 ILE B 158 1 20 HELIX 22 AC4 SER B 169 THR B 183 1 15 HELIX 23 AC5 PRO B 191 GLN B 206 1 16 HELIX 24 AC6 LEU B 210 ALA B 214 5 5 HELIX 25 AC7 CYS C 9 ASN C 23 1 15 HELIX 26 AC8 ALA C 36 GLY C 44 1 9 HELIX 27 AC9 GLU C 61 LEU C 72 1 12 HELIX 28 AD1 SER C 83 GLY C 95 1 13 HELIX 29 AD2 ALA C 97 SER C 108 1 12 HELIX 30 AD3 PHE C 110 SER C 114 5 5 HELIX 31 AD4 THR C 115 GLY C 131 1 17 HELIX 32 AD5 ASN C 132 HIS C 139 1 8 HELIX 33 AD6 HIS C 139 LYS C 156 1 18 HELIX 34 AD7 SER C 169 THR C 183 1 15 HELIX 35 AD8 PRO C 191 GLN C 206 1 16 HELIX 36 AD9 LEU C 210 ALA C 214 5 5 HELIX 37 AE1 CYS D 9 ASN D 23 1 15 HELIX 38 AE2 ALA D 36 GLY D 44 1 9 HELIX 39 AE3 GLU D 61 LEU D 72 1 12 HELIX 40 AE4 SER D 83 GLY D 95 1 13 HELIX 41 AE5 ALA D 97 SER D 108 1 12 HELIX 42 AE6 PHE D 110 SER D 114 5 5 HELIX 43 AE7 THR D 115 GLY D 131 1 17 HELIX 44 AE8 ASN D 132 HIS D 139 1 8 HELIX 45 AE9 HIS D 139 LYS D 156 1 18 HELIX 46 AF1 SER D 169 THR D 183 1 15 HELIX 47 AF2 PRO D 191 GLN D 206 1 16 HELIX 48 AF3 LEU D 210 ALA D 214 5 5 SHEET 1 AA1 4 GLU A 27 VAL A 30 0 SHEET 2 AA1 4 LYS A 2 ILE A 5 1 N LEU A 3 O GLU A 27 SHEET 3 AA1 4 ILE A 50 GLN A 52 -1 O ILE A 50 N TYR A 4 SHEET 4 AA1 4 TYR A 58 PRO A 60 -1 O MET A 59 N LEU A 51 SHEET 1 AA2 4 GLU B 27 VAL B 30 0 SHEET 2 AA2 4 LYS B 2 ILE B 5 1 N LEU B 3 O GLU B 27 SHEET 3 AA2 4 ILE B 50 GLN B 52 -1 O GLN B 52 N LYS B 2 SHEET 4 AA2 4 TYR B 58 PRO B 60 -1 O MET B 59 N LEU B 51 SHEET 1 AA3 4 GLU C 27 VAL C 30 0 SHEET 2 AA3 4 LYS C 2 ILE C 5 1 N LEU C 3 O GLU C 27 SHEET 3 AA3 4 ILE C 50 GLN C 52 -1 O ILE C 50 N TYR C 4 SHEET 4 AA3 4 TYR C 58 PRO C 60 -1 O MET C 59 N LEU C 51 SHEET 1 AA4 4 GLU D 27 VAL D 30 0 SHEET 2 AA4 4 LYS D 2 ILE D 5 1 N LEU D 3 O HIS D 29 SHEET 3 AA4 4 ILE D 50 GLN D 52 -1 O GLN D 52 N LYS D 2 SHEET 4 AA4 4 TYR D 58 PRO D 60 -1 O MET D 59 N LEU D 51 CISPEP 1 VAL A 48 PRO A 49 0 1.65 CISPEP 2 VAL B 48 PRO B 49 0 9.02 CISPEP 3 VAL C 48 PRO C 49 0 3.59 CISPEP 4 VAL D 48 PRO D 49 0 5.89 SITE 1 AC1 18 TYR A 6 CYS A 9 TYR A 11 LYS A 46 SITE 2 AC1 18 GLN A 47 VAL A 48 PRO A 49 GLU A 61 SITE 3 AC1 18 SER A 62 HOH A 474 HOH A 484 HOH A 504 SITE 4 AC1 18 HOH A 515 HOH A 578 HOH A 583 HOH A 605 SITE 5 AC1 18 PRO C 84 GLU C 87 SITE 1 AC2 12 LYS A 53 ARG A 57 TYR A 68 ASP A 135 SITE 2 AC2 12 HIS A 139 HOH A 413 HOH A 421 HOH A 442 SITE 3 AC2 12 HOH A 471 HOH A 490 HOH A 527 HOH A 540 SITE 1 AC3 17 TYR B 6 CYS B 9 TYR B 11 LYS B 46 SITE 2 AC3 17 GLN B 47 VAL B 48 PRO B 49 GLU B 61 SITE 3 AC3 17 SER B 62 HOH B 421 HOH B 448 HOH B 486 SITE 4 AC3 17 HOH B 492 HOH B 565 HOH B 569 HOH B 617 SITE 5 AC3 17 HOH B 623 SITE 1 AC4 12 LYS B 53 ARG B 57 TYR B 68 ASP B 135 SITE 2 AC4 12 HIS B 139 HOH B 425 HOH B 451 HOH B 459 SITE 3 AC4 12 HOH B 505 HOH B 506 HOH B 511 HOH B 568 SITE 1 AC5 20 PRO A 84 GLU A 87 HOH A 411 TYR C 6 SITE 2 AC5 20 CYS C 9 TYR C 11 LYS C 46 GLN C 47 SITE 3 AC5 20 VAL C 48 PRO C 49 GLU C 61 SER C 62 SITE 4 AC5 20 HOH C 422 HOH C 454 HOH C 480 HOH C 497 SITE 5 AC5 20 HOH C 555 HOH C 564 HOH C 573 HOH C 585 SITE 1 AC6 17 TYR D 6 CYS D 9 TYR D 11 LYS D 46 SITE 2 AC6 17 GLN D 47 VAL D 48 PRO D 49 GLU D 61 SITE 3 AC6 17 SER D 62 HOH D 427 HOH D 445 HOH D 468 SITE 4 AC6 17 HOH D 489 HOH D 495 HOH D 545 HOH D 558 SITE 5 AC6 17 HOH D 574 SITE 1 AC7 10 LYS D 53 ARG D 57 TYR D 68 ASP D 135 SITE 2 AC7 10 HIS D 139 HOH D 408 HOH D 417 HOH D 425 SITE 3 AC7 10 HOH D 491 HOH D 516 CRYST1 49.840 169.451 49.842 90.00 93.51 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020064 0.000000 0.001232 0.00000 SCALE2 0.000000 0.005901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020101 0.00000