HEADER LYASE 30-NOV-20 7DLR TITLE MYCOBACTERIUM TUBERCULOSIS ENOLASE MUTANT - E163A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE,2-PHOSPHOGLYCERATE COMPND 5 DEHYDRATASE; COMPND 6 EC: 4.2.1.11; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: ENO, DSI38_18100, ERS007663_02163, ERS013471_01432, SOURCE 5 ERS024276_01771, ERS027659_01730, ERS075361_03197, ERS094182_03347, SOURCE 6 F6W99_03724, SAMEA2683035_03102; SOURCE 7 EXPRESSION_SYSTEM: MYCOLICIBACTERIUM SMEGMATIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1772 KEYWDS MYCOBACTERIUM TUBERCULOSIS, ENOLASE, MUTANT, COMPLEX, PEP, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.AHMAD,B.K.BISWAL REVDAT 3 29-NOV-23 7DLR 1 REMARK REVDAT 2 08-NOV-23 7DLR 1 JRNL REVDAT 1 01-DEC-21 7DLR 0 JRNL AUTH M.AHMAD,B.JHA,S.BOSE,S.TIWARI,A.DWIVEDY,D.KAR,R.PAL, JRNL AUTH 2 R.MARIADASSE,T.PARISH,J.JEYAKANTHAN,K.R.VINOTHKUMAR, JRNL AUTH 3 B.K.BISWAL JRNL TITL STRUCTURAL SNAPSHOTS OF MYCOBACTERIUM TUBERCULOSIS ENOLASE JRNL TITL 2 REVEAL DUAL MODE OF 2PG BINDING AND ITS IMPLICATION IN JRNL TITL 3 ENZYME CATALYSIS. JRNL REF IUCRJ V. 10 738 2023 JRNL REFN ESSN 2052-2525 JRNL PMID 37860976 JRNL DOI 10.1107/S2052252523008485 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 19102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1135 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.279 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.252 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3186 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2993 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4333 ; 1.831 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6896 ; 1.501 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 6.267 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;34.337 ;21.895 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 479 ;13.678 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.845 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 429 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3690 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 651 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5649 -41.2583 3.5431 REMARK 3 T TENSOR REMARK 3 T11: 0.0236 T22: 0.0214 REMARK 3 T33: 0.0294 T12: -0.0154 REMARK 3 T13: -0.0104 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.3193 L22: 0.2534 REMARK 3 L33: 0.1611 L12: 0.0342 REMARK 3 L13: 0.0125 L23: 0.1096 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: -0.0310 S13: -0.0838 REMARK 3 S21: -0.0097 S22: -0.0212 S23: -0.0503 REMARK 3 S31: -0.0467 S32: 0.0319 S33: -0.0175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7DLR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1300019632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21190 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7CLL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M AMMONIUM ACETATE, REMARK 280 BIS TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 70.09900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 70.09900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.20500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 70.09900 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 70.09900 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 45.20500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 70.09900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 70.09900 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 45.20500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 70.09900 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 70.09900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 45.20500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 70.09900 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.09900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 45.20500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 70.09900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 70.09900 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 45.20500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 70.09900 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 70.09900 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 45.20500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 70.09900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 70.09900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 45.20500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 97310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -253.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 711 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 719 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 258 REMARK 465 ALA A 425 REMARK 465 CYS A 426 REMARK 465 GLU A 427 REMARK 465 THR A 428 REMARK 465 LYS A 429 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 8 NE CZ NH1 NH2 REMARK 470 SER A 42 OG REMARK 470 LYS A 65 NZ REMARK 470 GLN A 91 OE1 NE2 REMARK 470 ASP A 123 OD1 OD2 REMARK 470 HIS A 154 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 156 CG OD1 OD2 REMARK 470 LYS A 189 NZ REMARK 470 LYS A 193 CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 ASP A 250 CG OD1 OD2 REMARK 470 THR A 259 OG1 CG2 REMARK 470 ASP A 264 OD1 OD2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 GLU A 318 OE2 REMARK 470 GLU A 321 OE1 OE2 REMARK 470 MET A 372 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 364 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 53.78 -91.21 REMARK 500 GLU A 73 -56.51 -122.58 REMARK 500 HIS A 139 -2.61 -154.20 REMARK 500 ASP A 235 -60.77 -96.58 REMARK 500 ALA A 243 58.84 38.18 REMARK 500 ASP A 284 53.68 37.69 REMARK 500 ASP A 310 -83.45 -105.02 REMARK 500 ALA A 329 176.02 68.35 REMARK 500 THR A 387 25.70 -140.84 REMARK 500 PRO A 390 48.31 -77.19 REMARK 500 ARG A 392 119.82 73.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 737 DISTANCE = 6.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 507 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 241 OD2 REMARK 620 2 GLU A 283 OE2 72.5 REMARK 620 3 ASP A 310 OD2 159.5 87.6 REMARK 620 4 PEP A 501 O2' 82.0 118.6 104.0 REMARK 620 5 HOH A 625 O 85.7 89.8 99.6 143.3 REMARK 620 6 HOH A 692 O 125.5 162.0 74.5 69.6 90.5 REMARK 620 N 1 2 3 4 5 DBREF1 7DLR A 1 429 UNP A0A0E8NV14_MYCTX DBREF2 7DLR A A0A0E8NV14 1 429 SEQADV 7DLR MET A -6 UNP A0A0E8NV1 INITIATING METHIONINE SEQADV 7DLR HIS A -5 UNP A0A0E8NV1 EXPRESSION TAG SEQADV 7DLR HIS A -4 UNP A0A0E8NV1 EXPRESSION TAG SEQADV 7DLR HIS A -3 UNP A0A0E8NV1 EXPRESSION TAG SEQADV 7DLR HIS A -2 UNP A0A0E8NV1 EXPRESSION TAG SEQADV 7DLR HIS A -1 UNP A0A0E8NV1 EXPRESSION TAG SEQADV 7DLR HIS A 0 UNP A0A0E8NV1 EXPRESSION TAG SEQADV 7DLR ALA A 163 UNP A0A0E8NV1 GLU 163 ENGINEERED MUTATION SEQRES 1 A 436 MET HIS HIS HIS HIS HIS HIS MET PRO ILE ILE GLU GLN SEQRES 2 A 436 VAL ARG ALA ARG GLU ILE LEU ASP SER ARG GLY ASN PRO SEQRES 3 A 436 THR VAL GLU VAL GLU VAL ALA LEU ILE ASP GLY THR PHE SEQRES 4 A 436 ALA ARG ALA ALA VAL PRO SER GLY ALA SER THR GLY GLU SEQRES 5 A 436 HIS GLU ALA VAL GLU LEU ARG ASP GLY GLY ASP ARG TYR SEQRES 6 A 436 GLY GLY LYS GLY VAL GLN LYS ALA VAL GLN ALA VAL LEU SEQRES 7 A 436 ASP GLU ILE GLY PRO ALA VAL ILE GLY LEU ASN ALA ASP SEQRES 8 A 436 ASP GLN ARG LEU VAL ASP GLN ALA LEU VAL ASP LEU ASP SEQRES 9 A 436 GLY THR PRO ASP LYS SER ARG LEU GLY GLY ASN ALA ILE SEQRES 10 A 436 LEU GLY VAL SER LEU ALA VAL ALA LYS ALA ALA ALA ASP SEQRES 11 A 436 SER ALA GLU LEU PRO LEU PHE ARG TYR VAL GLY GLY PRO SEQRES 12 A 436 ASN ALA HIS ILE LEU PRO VAL PRO MET MET ASN ILE LEU SEQRES 13 A 436 ASN GLY GLY ALA HIS ALA ASP THR ALA VAL ASP ILE GLN SEQRES 14 A 436 ALA PHE MET VAL ALA PRO ILE GLY ALA PRO SER PHE VAL SEQRES 15 A 436 GLU ALA LEU ARG TRP GLY ALA GLU VAL TYR HIS ALA LEU SEQRES 16 A 436 LYS SER VAL LEU LYS LYS GLU GLY LEU SER THR GLY LEU SEQRES 17 A 436 GLY ASP GLU GLY GLY PHE ALA PRO ASP VAL ALA GLY THR SEQRES 18 A 436 THR ALA ALA LEU ASP LEU ILE SER ARG ALA ILE GLU SER SEQRES 19 A 436 ALA GLY LEU ARG PRO GLY ALA ASP VAL ALA LEU ALA LEU SEQRES 20 A 436 ASP ALA ALA ALA THR GLU PHE PHE THR ASP GLY THR GLY SEQRES 21 A 436 TYR VAL PHE GLU GLY THR THR ARG THR ALA ASP GLN MET SEQRES 22 A 436 THR GLU PHE TYR ALA GLY LEU LEU GLY ALA TYR PRO LEU SEQRES 23 A 436 VAL SER ILE GLU ASP PRO LEU SER GLU ASP ASP TRP ASP SEQRES 24 A 436 GLY TRP ALA ALA LEU THR ALA SER ILE GLY ASP ARG VAL SEQRES 25 A 436 GLN ILE VAL GLY ASP ASP ILE PHE VAL THR ASN PRO GLU SEQRES 26 A 436 ARG LEU GLU GLU GLY ILE GLU ARG GLY VAL ALA ASN ALA SEQRES 27 A 436 LEU LEU VAL LYS VAL ASN GLN ILE GLY THR LEU THR GLU SEQRES 28 A 436 THR LEU ASP ALA VAL THR LEU ALA HIS HIS GLY GLY TYR SEQRES 29 A 436 ARG THR MET ILE SER HIS ARG SER GLY GLU THR GLU ASP SEQRES 30 A 436 THR MET ILE ALA ASP LEU ALA VAL ALA ILE GLY SER GLY SEQRES 31 A 436 GLN ILE LYS THR GLY ALA PRO ALA ARG SER GLU ARG VAL SEQRES 32 A 436 ALA LYS TYR ASN GLN LEU LEU ARG ILE GLU GLU ALA LEU SEQRES 33 A 436 GLY ASP ALA ALA ARG TYR ALA GLY ASP LEU ALA PHE PRO SEQRES 34 A 436 ARG PHE ALA CYS GLU THR LYS HET PEP A 501 10 HET PEG A 502 7 HET EDO A 503 4 HET EDO A 504 4 HET ACT A 505 4 HET ACT A 506 4 HET MG A 507 1 HET CL A 508 1 HET CL A 509 1 HET EDO A 510 4 HET CL A 511 1 HETNAM PEP PHOSPHOENOLPYRUVATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PEP C3 H5 O6 P FORMUL 3 PEG C4 H10 O3 FORMUL 4 EDO 3(C2 H6 O2) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 8 MG MG 2+ FORMUL 9 CL 3(CL 1-) FORMUL 13 HOH *137(H2 O) HELIX 1 AA1 ASP A 56 LYS A 61 5 6 HELIX 2 AA2 VAL A 63 GLU A 73 1 11 HELIX 3 AA3 GLU A 73 ILE A 79 1 7 HELIX 4 AA4 ASP A 85 GLY A 98 1 14 HELIX 5 AA5 GLY A 106 ALA A 125 1 20 HELIX 6 AA6 PRO A 128 GLY A 135 1 8 HELIX 7 AA7 GLY A 152 ALA A 155 5 4 HELIX 8 AA8 SER A 173 GLU A 195 1 23 HELIX 9 AA9 GLY A 213 ALA A 228 1 16 HELIX 10 AB1 ALA A 243 GLU A 246 5 4 HELIX 11 AB2 THR A 262 TYR A 277 1 16 HELIX 12 AB3 ASP A 290 GLY A 302 1 13 HELIX 13 AB4 ASN A 316 GLY A 327 1 12 HELIX 14 AB5 LYS A 335 GLY A 340 1 6 HELIX 15 AB6 THR A 341 GLY A 355 1 15 HELIX 16 AB7 THR A 371 GLY A 381 1 11 HELIX 17 AB8 ARG A 392 GLY A 410 1 19 HELIX 18 AB9 ASP A 411 ALA A 413 5 3 HELIX 19 AC1 GLY A 417 PHE A 421 5 5 SHEET 1 AA1 3 ILE A 4 LEU A 13 0 SHEET 2 AA1 3 PRO A 19 LEU A 27 -1 O GLU A 24 N ARG A 8 SHEET 3 AA1 3 PHE A 32 ALA A 36 -1 O ALA A 35 N VAL A 23 SHEET 1 AA2 2 ILE A 140 LEU A 141 0 SHEET 2 AA2 2 ARG A 414 TYR A 415 1 O ARG A 414 N LEU A 141 SHEET 1 AA3 9 VAL A 143 PRO A 144 0 SHEET 2 AA3 9 GLN A 384 LYS A 386 1 O ILE A 385 N VAL A 143 SHEET 3 AA3 9 ARG A 358 SER A 362 1 N ILE A 361 O LYS A 386 SHEET 4 AA3 9 ALA A 331 VAL A 334 1 N VAL A 334 O MET A 360 SHEET 5 AA3 9 GLN A 306 GLY A 309 1 N GLY A 309 O LEU A 333 SHEET 6 AA3 9 LEU A 279 GLU A 283 1 N ILE A 282 O VAL A 308 SHEET 7 AA3 9 ALA A 237 ASP A 241 1 N LEU A 240 O GLU A 283 SHEET 8 AA3 9 ALA A 163 ALA A 167 -1 N ALA A 167 O ALA A 237 SHEET 9 AA3 9 MET A 146 ASN A 150 -1 N MET A 146 O VAL A 166 SHEET 1 AA4 3 PHE A 248 THR A 249 0 SHEET 2 AA4 3 GLY A 253 VAL A 255 -1 O GLY A 253 N THR A 249 SHEET 3 AA4 3 THR A 260 ARG A 261 -1 O ARG A 261 N TYR A 254 LINK OD2 ASP A 241 MG MG A 507 1555 1555 2.36 LINK OE2 GLU A 283 MG MG A 507 1555 1555 2.22 LINK OD2 ASP A 310 MG MG A 507 1555 1555 2.29 LINK O2' PEP A 501 MG MG A 507 1555 1555 2.22 LINK MG MG A 507 O HOH A 625 1555 1555 2.10 LINK MG MG A 507 O HOH A 692 1555 1555 2.81 CRYST1 140.198 140.198 90.410 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007133 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011061 0.00000