HEADER TRANSFERASE/RNA 30-NOV-20 7DLZ TITLE CRYSTAL STRUCTURE OF METHYLTRANSFERASE RIBOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: U1A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (45-MER); COMPND 8 CHAIN: X, Y; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SNRPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS RNA, METHYLTRANSFERASE, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.H.GAN,Y.Q.GAO,H.Y.JIANG,D.R.CHEN,A.I.H.MURCHIE REVDAT 2 29-NOV-23 7DLZ 1 REMARK REVDAT 1 27-OCT-21 7DLZ 0 JRNL AUTH H.Y.JIANG,Y.Q.GAO,L.ZHANG,D.R.CHEN,J.H.GAN,A.I.H.MURCHIE JRNL TITL THE IDENTIFICATION AND CHARACTERIZATION OF A SELECTED JRNL TITL 2 SAM-DEPENDENT METHYLTRANSFERASE RIBOZYME THAT IS PRESENT IN JRNL TITL 3 NATURAL SEQUENCES JRNL REF NAT CATAL V. 4 872 2021 JRNL REFN ESSN 2520-1158 JRNL DOI 10.1038/S41929-021-00685-Z REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.520 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.5 REMARK 3 NUMBER OF REFLECTIONS : 16007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7760 - 5.1269 1.00 3981 205 0.2024 0.2458 REMARK 3 2 5.1269 - 4.0727 0.99 3924 168 0.1958 0.2536 REMARK 3 3 4.0727 - 3.5588 0.94 3648 206 0.2201 0.2719 REMARK 3 4 3.5588 - 3.2338 0.65 2522 130 0.2440 0.3141 REMARK 3 5 3.2338 - 3.0023 0.30 1175 48 0.2659 0.3618 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5097 REMARK 3 ANGLE : 0.937 7325 REMARK 3 CHIRALITY : 0.056 907 REMARK 3 PLANARITY : 0.007 602 REMARK 3 DIHEDRAL : 11.868 2869 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 7.0398 -21.7038 23.8363 REMARK 3 T TENSOR REMARK 3 T11: 0.3277 T22: 0.1964 REMARK 3 T33: 0.2942 T12: -0.0847 REMARK 3 T13: -0.0073 T23: -0.0988 REMARK 3 L TENSOR REMARK 3 L11: 1.2608 L22: 0.7211 REMARK 3 L33: 1.0775 L12: 0.0858 REMARK 3 L13: -0.7366 L23: -0.1084 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: 0.1091 S13: 0.1465 REMARK 3 S21: -0.3190 S22: -0.0516 S23: 0.1077 REMARK 3 S31: -0.1325 S32: -0.2953 S33: -0.0489 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN X AND ((RESID 1 AND (NAME O5 OR REMARK 3 NAME C5 OR NAME C4 OR NAME O4 OR NAME C3 REMARK 3 OR NAME O3 OR NAME C2 OR NAME O2 OR NAME REMARK 3 C1 OR NAME N9 OR NAME C8 OR NAME N7 OR REMARK 3 NAME C5 OR NAME C6 OR NAME O6 OR NAME N1 REMARK 3 OR NAME C2 OR NAME N2 OR NAME N3 OR NAME REMARK 3 C4 )) OR RESID 2 THROUGH 45)) REMARK 3 SELECTION : CHAIN Y REMARK 3 ATOM PAIRS NUMBER : 1072 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 8 OR (RESID 9 THROUGH REMARK 3 10 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 11 THROUGH REMARK 3 18 OR (RESID 19 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 20 THROUGH 21 OR (RESID 22 THROUGH 23 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 24 THROUGH 26 OR REMARK 3 (RESID 27 THROUGH 28 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 29 THROUGH 30 OR (RESID 31 THROUGH REMARK 3 32 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 33 THROUGH REMARK 3 40 OR (RESID 41 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 42 THROUGH 46 OR (RESID 47 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 48 OR (RESID 49 THROUGH 52 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 53 OR (RESID 54 REMARK 3 THROUGH 55 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 56 REMARK 3 THROUGH 59 OR (RESID 60 THROUGH 61 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 62 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 87 OR (RESID 88 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 89 THROUGH 91 OR (RESID 92 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 93 THROUGH 94)) REMARK 3 SELECTION : (CHAIN B AND (RESID 8 THROUGH 21 OR REMARK 3 (RESID 22 THROUGH 23 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 24 THROUGH 26 OR (RESID 27 THROUGH REMARK 3 28 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 29 THROUGH REMARK 3 46 OR (RESID 47 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 48 OR (RESID 49 THROUGH 52 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 53 THROUGH 60 OR (RESID 61 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 62 THROUGH 87 OR REMARK 3 (RESID 88 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 89 REMARK 3 THROUGH 94)) REMARK 3 ATOM PAIRS NUMBER : 1464 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 8 OR (RESID 9 THROUGH REMARK 3 10 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 11 THROUGH REMARK 3 18 OR (RESID 19 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 20 THROUGH 21 OR (RESID 22 THROUGH 23 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 24 THROUGH 26 OR REMARK 3 (RESID 27 THROUGH 28 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 29 THROUGH 30 OR (RESID 31 THROUGH REMARK 3 32 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 33 THROUGH REMARK 3 40 OR (RESID 41 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 42 THROUGH 46 OR (RESID 47 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 48 OR (RESID 49 THROUGH 52 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 53 OR (RESID 54 REMARK 3 THROUGH 55 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 56 REMARK 3 THROUGH 59 OR (RESID 60 THROUGH 61 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 62 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 87 OR (RESID 88 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 89 THROUGH 91 OR (RESID 92 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 93 THROUGH 94)) REMARK 3 SELECTION : (CHAIN C AND (RESID 8 OR (RESID 9 THROUGH REMARK 3 10 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 11 THROUGH REMARK 3 18 OR (RESID 19 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 20 THROUGH 21 OR (RESID 22 THROUGH 23 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 24 THROUGH 26 OR REMARK 3 (RESID 27 THROUGH 28 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 29 THROUGH 30 OR (RESID 31 THROUGH REMARK 3 32 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 33 THROUGH REMARK 3 40 OR (RESID 41 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 42 THROUGH 50 OR (RESID 51 THROUGH 52 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 53 OR (RESID 54 REMARK 3 THROUGH 55 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 56 REMARK 3 THROUGH 59 OR (RESID 60 THROUGH 61 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 62 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 91 OR (RESID 92 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 93 THROUGH 94)) REMARK 3 ATOM PAIRS NUMBER : 1464 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 8 OR (RESID 9 THROUGH REMARK 3 10 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 11 THROUGH REMARK 3 18 OR (RESID 19 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 20 THROUGH 21 OR (RESID 22 THROUGH 23 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 24 THROUGH 26 OR REMARK 3 (RESID 27 THROUGH 28 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 29 THROUGH 30 OR (RESID 31 THROUGH REMARK 3 32 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 33 THROUGH REMARK 3 40 OR (RESID 41 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 42 THROUGH 46 OR (RESID 47 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 48 OR (RESID 49 THROUGH 52 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 53 OR (RESID 54 REMARK 3 THROUGH 55 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 56 REMARK 3 THROUGH 59 OR (RESID 60 THROUGH 61 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 62 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 87 OR (RESID 88 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 89 THROUGH 91 OR (RESID 92 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 93 THROUGH 94)) REMARK 3 SELECTION : (CHAIN D AND (RESID 8 OR (RESID 9 THROUGH REMARK 3 10 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 11 THROUGH REMARK 3 18 OR (RESID 19 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 20 THROUGH 22 OR (RESID 23 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 24 THROUGH 27 OR (RESID 28 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 29 THROUGH 30 OR REMARK 3 (RESID 31 THROUGH 32 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 33 THROUGH 40 OR (RESID 41 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 42 THROUGH 53 OR REMARK 3 (RESID 54 THROUGH 55 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 56 THROUGH 59 OR (RESID 60 THROUGH REMARK 3 61 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 62 THROUGH REMARK 3 91 OR (RESID 92 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 93 THROUGH 94)) REMARK 3 ATOM PAIRS NUMBER : 1464 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1300019651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19768 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1URN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENE GLYCOL 3350, PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.08800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, X, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 PRO A 4 REMARK 465 PHE A 101 REMARK 465 VAL A 102 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 THR B 6 REMARK 465 ARG B 7 REMARK 465 ALA B 95 REMARK 465 LYS B 96 REMARK 465 MET B 97 REMARK 465 LYS B 98 REMARK 465 GLY B 99 REMARK 465 THR B 100 REMARK 465 PHE B 101 REMARK 465 VAL B 102 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 VAL C 3 REMARK 465 PRO C 4 REMARK 465 GLU C 5 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 VAL D 3 REMARK 465 PRO D 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 NE CZ NH1 NH2 REMARK 470 LYS A 20 CD CE NZ REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 THR A 100 OG1 CG2 REMARK 470 ASN B 9 CG OD1 ND2 REMARK 470 HIS B 10 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 LYS B 20 CD CE NZ REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 TYR B 31 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 41 CG CD1 CD2 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 MET B 51 CG SD CE REMARK 470 GLN B 54 CG CD OE1 NE2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 ASP B 92 CG OD1 OD2 REMARK 470 ARG C 7 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 20 CD CE NZ REMARK 470 LYS C 23 CG CD CE NZ REMARK 470 ARG C 47 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 49 CG CD1 CD2 REMARK 470 LYS C 50 CG CD CE NZ REMARK 470 LYS C 88 CG CD CE NZ REMARK 470 MET C 97 CG SD CE REMARK 470 LYS C 98 CG CD CE NZ REMARK 470 VAL C 102 CG1 CG2 REMARK 470 GLU D 5 CG CD OE1 OE2 REMARK 470 ARG D 7 NE CZ NH1 NH2 REMARK 470 LYS D 20 CD CE NZ REMARK 470 LYS D 22 CG CD CE NZ REMARK 470 LYS D 27 CG CD CE NZ REMARK 470 ARG D 47 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 49 CG CD1 CD2 REMARK 470 LYS D 50 CG CD CE NZ REMARK 470 MET D 51 CG SD CE REMARK 470 ARG D 52 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 80 CG CD CE NZ REMARK 470 LYS D 88 CG CD CE NZ REMARK 470 LYS D 98 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C X 25 O3' U X 26 P -0.073 REMARK 500 U X 26 O3' C X 27 P -0.074 REMARK 500 C X 27 O3' C X 28 P -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 79 18.03 56.21 REMARK 500 PRO B 76 99.37 -67.97 REMARK 500 ASP B 79 12.98 57.60 REMARK 500 ASP C 79 15.35 56.98 REMARK 500 THR C 89 -119.12 57.51 REMARK 500 MET D 51 141.82 -37.43 REMARK 500 PRO D 76 98.76 -65.74 REMARK 500 ASP D 79 11.45 58.46 REMARK 500 ASP D 90 13.93 52.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 7DLZ A 1 102 UNP P09012 SNRPA_HUMAN 1 102 DBREF 7DLZ B 1 102 UNP P09012 SNRPA_HUMAN 1 102 DBREF 7DLZ C 1 102 UNP P09012 SNRPA_HUMAN 1 102 DBREF 7DLZ D 1 102 UNP P09012 SNRPA_HUMAN 1 102 DBREF 7DLZ X 1 45 PDB 7DLZ 7DLZ 1 45 DBREF 7DLZ Y 1 45 PDB 7DLZ 7DLZ 1 45 SEQRES 1 A 102 MET ALA VAL PRO GLU THR ARG PRO ASN HIS THR ILE TYR SEQRES 2 A 102 ILE ASN ASN LEU ASN GLU LYS ILE LYS LYS ASP GLU LEU SEQRES 3 A 102 LYS LYS SER LEU TYR ALA ILE PHE SER GLN PHE GLY GLN SEQRES 4 A 102 ILE LEU ASP ILE LEU VAL SER ARG SER LEU LYS MET ARG SEQRES 5 A 102 GLY GLN ALA PHE VAL ILE PHE LYS GLU VAL SER SER ALA SEQRES 6 A 102 THR ASN ALA LEU ARG SER MET GLN GLY PHE PRO PHE TYR SEQRES 7 A 102 ASP LYS PRO MET ARG ILE GLN TYR ALA LYS THR ASP SER SEQRES 8 A 102 ASP ILE ILE ALA LYS MET LYS GLY THR PHE VAL SEQRES 1 B 102 MET ALA VAL PRO GLU THR ARG PRO ASN HIS THR ILE TYR SEQRES 2 B 102 ILE ASN ASN LEU ASN GLU LYS ILE LYS LYS ASP GLU LEU SEQRES 3 B 102 LYS LYS SER LEU TYR ALA ILE PHE SER GLN PHE GLY GLN SEQRES 4 B 102 ILE LEU ASP ILE LEU VAL SER ARG SER LEU LYS MET ARG SEQRES 5 B 102 GLY GLN ALA PHE VAL ILE PHE LYS GLU VAL SER SER ALA SEQRES 6 B 102 THR ASN ALA LEU ARG SER MET GLN GLY PHE PRO PHE TYR SEQRES 7 B 102 ASP LYS PRO MET ARG ILE GLN TYR ALA LYS THR ASP SER SEQRES 8 B 102 ASP ILE ILE ALA LYS MET LYS GLY THR PHE VAL SEQRES 1 C 102 MET ALA VAL PRO GLU THR ARG PRO ASN HIS THR ILE TYR SEQRES 2 C 102 ILE ASN ASN LEU ASN GLU LYS ILE LYS LYS ASP GLU LEU SEQRES 3 C 102 LYS LYS SER LEU TYR ALA ILE PHE SER GLN PHE GLY GLN SEQRES 4 C 102 ILE LEU ASP ILE LEU VAL SER ARG SER LEU LYS MET ARG SEQRES 5 C 102 GLY GLN ALA PHE VAL ILE PHE LYS GLU VAL SER SER ALA SEQRES 6 C 102 THR ASN ALA LEU ARG SER MET GLN GLY PHE PRO PHE TYR SEQRES 7 C 102 ASP LYS PRO MET ARG ILE GLN TYR ALA LYS THR ASP SER SEQRES 8 C 102 ASP ILE ILE ALA LYS MET LYS GLY THR PHE VAL SEQRES 1 D 102 MET ALA VAL PRO GLU THR ARG PRO ASN HIS THR ILE TYR SEQRES 2 D 102 ILE ASN ASN LEU ASN GLU LYS ILE LYS LYS ASP GLU LEU SEQRES 3 D 102 LYS LYS SER LEU TYR ALA ILE PHE SER GLN PHE GLY GLN SEQRES 4 D 102 ILE LEU ASP ILE LEU VAL SER ARG SER LEU LYS MET ARG SEQRES 5 D 102 GLY GLN ALA PHE VAL ILE PHE LYS GLU VAL SER SER ALA SEQRES 6 D 102 THR ASN ALA LEU ARG SER MET GLN GLY PHE PRO PHE TYR SEQRES 7 D 102 ASP LYS PRO MET ARG ILE GLN TYR ALA LYS THR ASP SER SEQRES 8 D 102 ASP ILE ILE ALA LYS MET LYS GLY THR PHE VAL SEQRES 1 X 45 G G A C C U A C U A C G A SEQRES 2 X 45 G C G C C A U U G C A C U SEQRES 3 X 45 C C G G C G C C A C G G G SEQRES 4 X 45 G G G U C C SEQRES 1 Y 45 G G A C C U A C U A C G A SEQRES 2 Y 45 G C G C C A U U G C A C U SEQRES 3 Y 45 C C G G C G C C A C G G G SEQRES 4 Y 45 G G G U C C HELIX 1 AA1 LYS A 22 SER A 35 1 14 HELIX 2 AA2 GLU A 61 GLN A 73 1 13 HELIX 3 AA3 ILE A 93 MET A 97 5 5 HELIX 4 AA4 LYS B 22 SER B 35 1 14 HELIX 5 AA5 GLN B 36 GLY B 38 5 3 HELIX 6 AA6 GLU B 61 MET B 72 1 12 HELIX 7 AA7 LYS C 22 SER C 35 1 14 HELIX 8 AA8 GLN C 36 GLY C 38 5 3 HELIX 9 AA9 GLU C 61 MET C 72 1 12 HELIX 10 AB1 ASP C 90 MET C 97 1 8 HELIX 11 AB2 LYS D 22 SER D 35 1 14 HELIX 12 AB3 GLU D 61 MET D 72 1 12 HELIX 13 AB4 ASP D 90 LYS D 98 1 9 SHEET 1 AA1 4 ILE A 40 LEU A 44 0 SHEET 2 AA1 4 ALA A 55 PHE A 59 -1 O ILE A 58 N LEU A 41 SHEET 3 AA1 4 THR A 11 ASN A 15 -1 N ILE A 12 O VAL A 57 SHEET 4 AA1 4 ARG A 83 TYR A 86 -1 O GLN A 85 N TYR A 13 SHEET 1 AA2 4 ILE B 40 LEU B 44 0 SHEET 2 AA2 4 ALA B 55 PHE B 59 -1 O ILE B 58 N LEU B 41 SHEET 3 AA2 4 THR B 11 ASN B 15 -1 N ILE B 14 O ALA B 55 SHEET 4 AA2 4 ARG B 83 TYR B 86 -1 O GLN B 85 N TYR B 13 SHEET 1 AA3 4 ILE C 40 VAL C 45 0 SHEET 2 AA3 4 GLN C 54 PHE C 59 -1 O ILE C 58 N LEU C 41 SHEET 3 AA3 4 THR C 11 ASN C 15 -1 N ILE C 12 O VAL C 57 SHEET 4 AA3 4 ARG C 83 TYR C 86 -1 O ARG C 83 N ASN C 15 SHEET 1 AA4 5 ARG D 83 TYR D 86 0 SHEET 2 AA4 5 THR D 11 ASN D 15 -1 N TYR D 13 O GLN D 85 SHEET 3 AA4 5 ALA D 55 PHE D 59 -1 O ALA D 55 N ILE D 14 SHEET 4 AA4 5 ILE D 40 SER D 46 -1 N LEU D 41 O ILE D 58 SHEET 5 AA4 5 PHE D 101 VAL D 102 -1 O VAL D 102 N VAL D 45 SHEET 1 AA5 2 PRO D 76 PHE D 77 0 SHEET 2 AA5 2 LYS D 80 PRO D 81 -1 O LYS D 80 N PHE D 77 CRYST1 62.784 80.176 103.296 90.00 91.71 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015928 0.000000 0.000475 0.00000 SCALE2 0.000000 0.012473 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009685 0.00000