HEADER OXIDOREDUCTASE 03-DEC-20 7DMG TITLE SHORT CHAIN DEHYDROGENASE 2 (SCR2) CRYSTAL STRUCTURE WITH NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: (S)-SPECIFIC CARBONYL REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: STEREOSPECIFIC CARBONYL REDUCTASE 2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA PARAPSILOSIS; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 5480; SOURCE 5 GENE: SCR2, SCRII; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMAN FOLD, TETRAMER, TAG-FREE, WILD TYPE WITH NADPH, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.LI,R.Z.ZHANG,F.FOROUHAR,C.WANG,G.T.MONTELIONE,T.SZYPERSKI,Y.XU, AUTHOR 2 J.F.HUNT REVDAT 5 29-NOV-23 7DMG 1 REMARK REVDAT 4 14-SEP-22 7DMG 1 JRNL REVDAT 3 10-AUG-22 7DMG 1 TITLE REVDAT 2 27-JUL-22 7DMG 1 JRNL REVDAT 1 06-APR-22 7DMG 0 JRNL AUTH Y.LI,R.ZHANG,C.WANG,F.FOROUHAR,O.B.CLARKE,S.VOROBIEV, JRNL AUTH 2 S.SINGH,G.T.MONTELIONE,T.SZYPERSKI,Y.XU,J.F.HUNT JRNL TITL OLIGOMERIC INTERACTIONS MAINTAIN ACTIVE-SITE STRUCTURE IN A JRNL TITL 2 NONCOOPERATIVE ENZYME FAMILY. JRNL REF EMBO J. V. 41 08368 2022 JRNL REFN ESSN 1460-2075 JRNL PMID 35801308 JRNL DOI 10.15252/EMBJ.2021108368 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.5500 - 4.3100 1.00 3743 153 0.1392 0.1338 REMARK 3 2 4.3100 - 3.4200 1.00 3590 145 0.1391 0.1364 REMARK 3 3 3.4200 - 2.9900 1.00 3564 145 0.1583 0.1667 REMARK 3 4 2.9900 - 2.7100 1.00 3509 143 0.1769 0.1879 REMARK 3 5 2.7100 - 2.5200 1.00 3515 143 0.1709 0.2048 REMARK 3 6 2.5200 - 2.3700 1.00 3497 142 0.1654 0.1823 REMARK 3 7 2.3700 - 2.2500 1.00 3480 142 0.1695 0.1951 REMARK 3 8 2.2500 - 2.1500 1.00 3500 143 0.1696 0.1996 REMARK 3 9 2.1500 - 2.0700 1.00 3482 141 0.1748 0.2028 REMARK 3 10 2.0700 - 2.0000 1.00 3464 140 0.1753 0.2011 REMARK 3 11 2.0000 - 1.9400 1.00 3471 142 0.1831 0.2117 REMARK 3 12 1.9400 - 1.8800 1.00 3479 141 0.1901 0.2448 REMARK 3 13 1.8800 - 1.8300 1.00 3448 140 0.2100 0.2529 REMARK 3 14 1.8300 - 1.7900 0.98 3393 138 0.2371 0.2617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.159 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.561 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4374 REMARK 3 ANGLE : 2.211 5972 REMARK 3 CHIRALITY : 0.069 666 REMARK 3 PLANARITY : 0.010 746 REMARK 3 DIHEDRAL : 10.802 594 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -16.9646 -32.9432 12.7598 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.2158 REMARK 3 T33: 0.1960 T12: 0.0302 REMARK 3 T13: -0.0066 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.0166 L22: 0.7627 REMARK 3 L33: 0.7939 L12: 0.1201 REMARK 3 L13: -0.0465 L23: -0.0295 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: -0.1608 S13: 0.0864 REMARK 3 S21: 0.1139 S22: 0.0466 S23: 0.0069 REMARK 3 S31: -0.0864 S32: -0.0546 S33: -0.0126 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1300019627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51133 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 61.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CTM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM ACETATE, 20% PEG 3350, REMARK 280 PH 7.1, MICROBATCH, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.46200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.92700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.46200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.92700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -181.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -82.92400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 403 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 532 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 545 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 509 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 222 REMARK 465 ILE A 223 REMARK 465 SER A 224 REMARK 465 ASP A 225 REMARK 465 GLU B 222 REMARK 465 ILE B 223 REMARK 465 SER B 224 REMARK 465 ASP B 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 21 O HOH B 401 1.95 REMARK 500 NZ LYS B 157 O HOH B 402 1.96 REMARK 500 O HOH A 594 O HOH B 616 1.96 REMARK 500 O2A NAP A 301 O HOH A 401 2.03 REMARK 500 O1A NAP A 301 O HOH A 402 2.07 REMARK 500 OE2 GLU B 5 O HOH B 403 2.09 REMARK 500 O HOH A 448 O HOH A 559 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 128 CD GLU A 128 OE2 -0.088 REMARK 500 GLU B 128 CD GLU B 128 OE2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 3 OE1 - CD - OE2 ANGL. DEV. = -42.5 DEGREES REMARK 500 GLU A 3 CG - CD - OE1 ANGL. DEV. = 42.2 DEGREES REMARK 500 GLU A 3 CG - CD - OE2 ANGL. DEV. = -38.5 DEGREES REMARK 500 GLU A 75 OE1 - CD - OE2 ANGL. DEV. = -34.0 DEGREES REMARK 500 GLU A 75 CG - CD - OE1 ANGL. DEV. = 35.4 DEGREES REMARK 500 GLU A 75 CG - CD - OE2 ANGL. DEV. = -26.7 DEGREES REMARK 500 LYS A 79 CD - CE - NZ ANGL. DEV. = 25.3 DEGREES REMARK 500 LYS A 86 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 LYS A 86 CD - CE - NZ ANGL. DEV. = -15.2 DEGREES REMARK 500 GLU A 128 OE1 - CD - OE2 ANGL. DEV. = -46.6 DEGREES REMARK 500 GLU A 128 CG - CD - OE1 ANGL. DEV. = 42.5 DEGREES REMARK 500 GLU A 128 CG - CD - OE2 ANGL. DEV. = -32.4 DEGREES REMARK 500 ASP A 230 OD1 - CG - OD2 ANGL. DEV. = -18.0 DEGREES REMARK 500 ASP A 230 CB - CG - OD1 ANGL. DEV. = 15.2 DEGREES REMARK 500 ASP A 230 CB - CG - OD2 ANGL. DEV. = -13.9 DEGREES REMARK 500 GLU B 128 OE1 - CD - OE2 ANGL. DEV. = -36.7 DEGREES REMARK 500 GLU B 128 CG - CD - OE1 ANGL. DEV. = 53.6 DEGREES REMARK 500 GLU B 128 CG - CD - OE2 ANGL. DEV. = -32.8 DEGREES REMARK 500 PHE B 226 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 PHE B 226 CA - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 LEU B 270 CB - CG - CD2 ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 100.88 -165.80 REMARK 500 ASN A 66 -67.59 -124.96 REMARK 500 GLU A 75 -58.93 -11.93 REMARK 500 LEU A 145 -59.72 -121.02 REMARK 500 SER A 171 -129.42 -91.13 REMARK 500 GLN A 184 55.86 -154.32 REMARK 500 ALA A 220 100.70 -58.07 REMARK 500 ASN B 9 101.62 -168.84 REMARK 500 ASN B 66 -69.04 -120.55 REMARK 500 GLN B 78 -58.01 -29.83 REMARK 500 ASP B 132 35.67 -93.26 REMARK 500 SER B 171 -131.46 -91.41 REMARK 500 GLN B 184 57.32 -153.55 REMARK 500 VAL B 227 113.54 -18.83 REMARK 500 GLU B 228 107.98 -6.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 74 GLU A 75 140.70 REMARK 500 ASP B 132 ASN B 133 148.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 75 0.12 SIDE CHAIN REMARK 500 ASP A 230 0.13 SIDE CHAIN REMARK 500 PHE B 226 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 620 DISTANCE = 6.15 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 301 DBREF 7DMG A 1 279 UNP D5G304 D5G304_CANPA 1 279 DBREF 7DMG B 1 279 UNP D5G304 D5G304_CANPA 1 279 SEQADV 7DMG SER A 0 UNP D5G304 EXPRESSION TAG SEQADV 7DMG SER B 0 UNP D5G304 EXPRESSION TAG SEQRES 1 A 280 SER MET GLY GLU ILE GLU SER TYR CYS ASN LYS GLU LEU SEQRES 2 A 280 GLY PRO LEU PRO THR LYS ALA PRO THR LEU SER LYS ASN SEQRES 3 A 280 VAL LEU ASP LEU PHE SER LEU LYS GLY LYS VAL ALA SER SEQRES 4 A 280 VAL THR GLY SER SER GLY GLY ILE GLY TRP ALA VAL ALA SEQRES 5 A 280 GLU ALA TYR ALA GLN ALA GLY ALA ASP VAL ALA ILE TRP SEQRES 6 A 280 TYR ASN SER HIS PRO ALA ASP GLU LYS ALA GLU HIS LEU SEQRES 7 A 280 GLN LYS THR TYR GLY VAL ARG SER LYS ALA TYR LYS CYS SEQRES 8 A 280 ASN ILE SER ASP PRO LYS SER VAL GLU GLU THR ILE SER SEQRES 9 A 280 GLN GLN GLU LYS ASP PHE GLY THR ILE ASP VAL PHE VAL SEQRES 10 A 280 ALA ASN ALA GLY VAL PRO TRP THR GLU GLY PRO GLU ILE SEQRES 11 A 280 ASN VAL ASP ASN TYR ASP SER TRP ASN LYS ILE ILE ASN SEQRES 12 A 280 LEU ASP LEU ASN GLY VAL TYR TYR CYS ALA HIS THR VAL SEQRES 13 A 280 GLY LYS ILE PHE LYS LYS ASN GLY LYS GLY SER LEU VAL SEQRES 14 A 280 ILE THR SER SER MET SER GLY THR ILE VAL ASN VAL PRO SEQRES 15 A 280 GLN LEU GLN ALA ALA TYR ASN ALA ALA LYS ALA ALA CYS SEQRES 16 A 280 THR HIS LEU THR LYS SER LEU ALA VAL GLU TRP ALA PRO SEQRES 17 A 280 PHE ALA ARG VAL ASN CYS VAL SER PRO GLY TYR ILE ALA SEQRES 18 A 280 THR GLU ILE SER ASP PHE VAL GLU LYS ASP MET LYS ALA SEQRES 19 A 280 LYS TRP TRP GLN LEU THR PRO LEU GLY ARG GLU GLY LEU SEQRES 20 A 280 ALA GLN GLU LEU VAL GLY ALA TYR LEU TYR LEU ALA SER SEQRES 21 A 280 ASN ALA SER THR TYR THR THR GLY ALA ASN LEU ALA VAL SEQRES 22 A 280 ASP GLY GLY TYR THR CYS PRO SEQRES 1 B 280 SER MET GLY GLU ILE GLU SER TYR CYS ASN LYS GLU LEU SEQRES 2 B 280 GLY PRO LEU PRO THR LYS ALA PRO THR LEU SER LYS ASN SEQRES 3 B 280 VAL LEU ASP LEU PHE SER LEU LYS GLY LYS VAL ALA SER SEQRES 4 B 280 VAL THR GLY SER SER GLY GLY ILE GLY TRP ALA VAL ALA SEQRES 5 B 280 GLU ALA TYR ALA GLN ALA GLY ALA ASP VAL ALA ILE TRP SEQRES 6 B 280 TYR ASN SER HIS PRO ALA ASP GLU LYS ALA GLU HIS LEU SEQRES 7 B 280 GLN LYS THR TYR GLY VAL ARG SER LYS ALA TYR LYS CYS SEQRES 8 B 280 ASN ILE SER ASP PRO LYS SER VAL GLU GLU THR ILE SER SEQRES 9 B 280 GLN GLN GLU LYS ASP PHE GLY THR ILE ASP VAL PHE VAL SEQRES 10 B 280 ALA ASN ALA GLY VAL PRO TRP THR GLU GLY PRO GLU ILE SEQRES 11 B 280 ASN VAL ASP ASN TYR ASP SER TRP ASN LYS ILE ILE ASN SEQRES 12 B 280 LEU ASP LEU ASN GLY VAL TYR TYR CYS ALA HIS THR VAL SEQRES 13 B 280 GLY LYS ILE PHE LYS LYS ASN GLY LYS GLY SER LEU VAL SEQRES 14 B 280 ILE THR SER SER MET SER GLY THR ILE VAL ASN VAL PRO SEQRES 15 B 280 GLN LEU GLN ALA ALA TYR ASN ALA ALA LYS ALA ALA CYS SEQRES 16 B 280 THR HIS LEU THR LYS SER LEU ALA VAL GLU TRP ALA PRO SEQRES 17 B 280 PHE ALA ARG VAL ASN CYS VAL SER PRO GLY TYR ILE ALA SEQRES 18 B 280 THR GLU ILE SER ASP PHE VAL GLU LYS ASP MET LYS ALA SEQRES 19 B 280 LYS TRP TRP GLN LEU THR PRO LEU GLY ARG GLU GLY LEU SEQRES 20 B 280 ALA GLN GLU LEU VAL GLY ALA TYR LEU TYR LEU ALA SER SEQRES 21 B 280 ASN ALA SER THR TYR THR THR GLY ALA ASN LEU ALA VAL SEQRES 22 B 280 ASP GLY GLY TYR THR CYS PRO HET NAP A 301 48 HET NAP B 301 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *414(H2 O) HELIX 1 AA1 ASN A 9 GLY A 13 5 5 HELIX 2 AA2 ASN A 25 PHE A 30 1 6 HELIX 3 AA3 GLY A 44 ALA A 57 1 14 HELIX 4 AA4 ALA A 70 GLY A 82 1 13 HELIX 5 AA5 ASP A 94 GLY A 110 1 17 HELIX 6 AA6 PRO A 127 VAL A 131 5 5 HELIX 7 AA7 TYR A 134 LEU A 145 1 12 HELIX 8 AA8 LEU A 145 GLY A 163 1 19 HELIX 9 AA9 SER A 172 THR A 176 5 5 HELIX 10 AB1 GLN A 184 ALA A 206 1 23 HELIX 11 AB2 GLU A 228 THR A 239 1 12 HELIX 12 AB3 LEU A 246 GLU A 249 5 4 HELIX 13 AB4 LEU A 250 SER A 259 1 10 HELIX 14 AB5 ASN A 260 THR A 263 5 4 HELIX 15 AB6 ASN B 9 GLY B 13 5 5 HELIX 16 AB7 ASN B 25 PHE B 30 1 6 HELIX 17 AB8 GLY B 44 ALA B 57 1 14 HELIX 18 AB9 ALA B 70 GLY B 82 1 13 HELIX 19 AC1 ASP B 94 GLY B 110 1 17 HELIX 20 AC2 PRO B 127 VAL B 131 5 5 HELIX 21 AC3 TYR B 134 LEU B 145 1 12 HELIX 22 AC4 LEU B 145 GLY B 163 1 19 HELIX 23 AC5 SER B 172 THR B 176 5 5 HELIX 24 AC6 GLN B 184 ALA B 206 1 23 HELIX 25 AC7 GLU B 228 THR B 239 1 12 HELIX 26 AC8 LEU B 246 GLU B 249 5 4 HELIX 27 AC9 LEU B 250 SER B 259 1 10 HELIX 28 AD1 ASN B 260 THR B 263 5 4 SHEET 1 AA1 7 SER A 85 LYS A 89 0 SHEET 2 AA1 7 ASP A 60 TYR A 65 1 N TYR A 65 O TYR A 88 SHEET 3 AA1 7 VAL A 36 VAL A 39 1 N ALA A 37 O ASP A 60 SHEET 4 AA1 7 VAL A 114 ALA A 117 1 O VAL A 116 N SER A 38 SHEET 5 AA1 7 SER A 166 THR A 170 1 O VAL A 168 N PHE A 115 SHEET 6 AA1 7 ARG A 210 PRO A 216 1 O ARG A 210 N LEU A 167 SHEET 7 AA1 7 ASN A 269 VAL A 272 1 O LEU A 270 N SER A 215 SHEET 1 AA2 7 SER B 85 LYS B 89 0 SHEET 2 AA2 7 ASP B 60 TYR B 65 1 N ILE B 63 O LYS B 86 SHEET 3 AA2 7 VAL B 36 VAL B 39 1 N ALA B 37 O ASP B 60 SHEET 4 AA2 7 VAL B 114 ALA B 117 1 O VAL B 116 N SER B 38 SHEET 5 AA2 7 SER B 166 THR B 170 1 O VAL B 168 N PHE B 115 SHEET 6 AA2 7 ARG B 210 PRO B 216 1 O ARG B 210 N LEU B 167 SHEET 7 AA2 7 ASN B 269 VAL B 272 1 O LEU B 270 N CYS B 213 CISPEP 1 LEU A 15 PRO A 16 0 0.30 CISPEP 2 VAL A 180 PRO A 181 0 0.70 CISPEP 3 LEU B 15 PRO B 16 0 0.05 CISPEP 4 VAL B 180 PRO B 181 0 2.56 SITE 1 AC1 35 GLY A 41 SER A 43 GLY A 44 GLY A 45 SITE 2 AC1 35 ILE A 46 ASN A 66 SER A 67 HIS A 68 SITE 3 AC1 35 CYS A 90 ASN A 91 ILE A 92 ASN A 118 SITE 4 AC1 35 ALA A 119 GLY A 120 VAL A 121 LEU A 143 SITE 5 AC1 35 THR A 170 SER A 171 SER A 172 TYR A 187 SITE 6 AC1 35 LYS A 191 PRO A 216 GLY A 217 TYR A 218 SITE 7 AC1 35 ILE A 219 THR A 221 HOH A 401 HOH A 402 SITE 8 AC1 35 HOH A 427 HOH A 433 HOH A 465 HOH A 468 SITE 9 AC1 35 HOH A 471 HOH A 477 HOH A 493 SITE 1 AC2 33 GLY B 41 SER B 43 GLY B 44 GLY B 45 SITE 2 AC2 33 ILE B 46 ASN B 66 SER B 67 HIS B 68 SITE 3 AC2 33 CYS B 90 ASN B 91 ILE B 92 ASN B 118 SITE 4 AC2 33 ALA B 119 GLY B 120 VAL B 121 LEU B 143 SITE 5 AC2 33 THR B 170 SER B 171 SER B 172 TYR B 187 SITE 6 AC2 33 LYS B 191 PRO B 216 GLY B 217 ILE B 219 SITE 7 AC2 33 HOH B 404 HOH B 422 HOH B 443 HOH B 444 SITE 8 AC2 33 HOH B 477 HOH B 492 HOH B 497 HOH B 528 SITE 9 AC2 33 HOH B 545 CRYST1 70.006 82.924 91.854 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014284 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012059 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010887 0.00000