HEADER LYASE 10-DEC-20 7DNQ TITLE CRYSTAL STRUCTURE OF M.TUBERCULOSIS IMIDAZOLE GLYCEROL PHOSPHATE TITLE 2 DEHYDRATASE IN COMPLEX WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IGPD; COMPND 5 EC: 4.2.1.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: HISB, RV1601, MTCY336.03C; SOURCE 7 EXPRESSION_SYSTEM: MYCOLICIBACTERIUM SMEGMATIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1772 KEYWDS INHIBITOR, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.TIWARI,R.K.PAL,B.K.BISWAL REVDAT 2 29-NOV-23 7DNQ 1 REMARK REVDAT 1 22-DEC-21 7DNQ 0 JRNL AUTH S.TIWARI,R.K.PAL,B.K.BISWAL JRNL TITL CRYSTAL STRUCTURE OF M.TUBERCULOSIS IMIDAZOLE GLYCEROL JRNL TITL 2 PHOSPHATE DEHYDRATASE IN COMPLEX WITH AN INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.086 REMARK 3 FREE R VALUE TEST SET COUNT : 587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 779 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1458 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.602 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1501 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1377 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2039 ; 1.538 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3162 ; 1.325 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 189 ; 7.340 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;35.285 ;20.114 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 227 ;16.027 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.944 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 203 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1726 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 333 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 310 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 72 ; 0.223 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 702 ; 0.153 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 79 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 759 ; 2.026 ; 2.876 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 758 ; 2.022 ; 2.870 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 947 ; 3.091 ; 4.301 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 948 ; 3.090 ; 4.309 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 742 ; 2.826 ; 3.252 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 743 ; 2.824 ; 3.258 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1092 ; 4.379 ; 4.720 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1093 ; 4.377 ; 4.726 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7DNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1300019814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11541 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 29.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GQU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 1500, 0.2M SODIUM CITRATE REMARK 280 TRIBASIC DEHYDRATE, 0.1M TRIS HCL, PH 9.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 104030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 122180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -575.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 13 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 13 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 15 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 17 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 17 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 18 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 20 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 20 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 22 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 23 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 23 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 487 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 493 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 ALA A 9 REMARK 465 VAL A 200 REMARK 465 SER A 201 REMARK 465 GLY A 202 REMARK 465 VAL A 203 REMARK 465 PRO A 204 REMARK 465 SER A 205 REMARK 465 THR A 206 REMARK 465 LYS A 207 REMARK 465 GLY A 208 REMARK 465 ALA A 209 REMARK 465 LEU A 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 20 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 95 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 11 68.70 -116.13 REMARK 500 ASP A 31 48.35 -104.47 REMARK 500 GLU A 71 -174.07 169.25 REMARK 500 ARG A 99 -51.55 79.73 REMARK 500 ASP A 108 -114.12 50.73 REMARK 500 HIS A 135 23.82 -140.83 REMARK 500 SER A 142 -151.75 -122.29 REMARK 500 ARG A 162 60.83 60.72 REMARK 500 ARG A 173 -55.68 -125.70 REMARK 500 PRO A 198 6.58 -66.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 NE2 REMARK 620 2 HIS A 74 NE2 53.9 REMARK 620 3 HIS A 176 NE2 103.4 52.0 REMARK 620 4 GLU A 180 OE1 91.6 73.5 85.2 REMARK 620 5 HB3 A 305 N3 167.2 138.3 89.5 89.7 REMARK 620 6 HOH A 416 O 86.1 135.6 170.0 91.2 81.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 73 NE2 REMARK 620 2 GLU A 77 OE1 89.4 REMARK 620 3 HIS A 152 NE2 90.7 80.5 REMARK 620 4 HIS A 177 NE2 47.0 88.4 44.3 REMARK 620 5 HB3 A 305 N2 83.8 88.5 167.8 130.7 REMARK 620 6 HOH A 407 O 171.9 82.7 85.9 130.2 98.1 REMARK 620 N 1 2 3 4 5 DBREF 7DNQ A 2 210 UNP P9WML9 HIS7_MYCTU 2 210 SEQADV 7DNQ MET A -5 UNP P9WML9 INITIATING METHIONINE SEQADV 7DNQ HIS A -4 UNP P9WML9 EXPRESSION TAG SEQADV 7DNQ HIS A -3 UNP P9WML9 EXPRESSION TAG SEQADV 7DNQ HIS A -2 UNP P9WML9 EXPRESSION TAG SEQADV 7DNQ HIS A -1 UNP P9WML9 EXPRESSION TAG SEQADV 7DNQ HIS A 0 UNP P9WML9 EXPRESSION TAG SEQADV 7DNQ HIS A 1 UNP P9WML9 EXPRESSION TAG SEQRES 1 A 216 MET HIS HIS HIS HIS HIS HIS THR THR THR GLN THR ALA SEQRES 2 A 216 LYS ALA SER ARG ARG ALA ARG ILE GLU ARG ARG THR ARG SEQRES 3 A 216 GLU SER ASP ILE VAL ILE GLU LEU ASP LEU ASP GLY THR SEQRES 4 A 216 GLY GLN VAL ALA VAL ASP THR GLY VAL PRO PHE TYR ASP SEQRES 5 A 216 HIS MET LEU THR ALA LEU GLY SER HIS ALA SER PHE ASP SEQRES 6 A 216 LEU THR VAL ARG ALA THR GLY ASP VAL GLU ILE GLU ALA SEQRES 7 A 216 HIS HIS THR ILE GLU ASP THR ALA ILE ALA LEU GLY THR SEQRES 8 A 216 ALA LEU GLY GLN ALA LEU GLY ASP LYS ARG GLY ILE ARG SEQRES 9 A 216 ARG PHE GLY ASP ALA PHE ILE PRO MET ASP GLU THR LEU SEQRES 10 A 216 ALA HIS ALA ALA VAL ASP LEU SER GLY ARG PRO TYR CYS SEQRES 11 A 216 VAL HIS THR GLY GLU PRO ASP HIS LEU GLN HIS THR THR SEQRES 12 A 216 ILE ALA GLY SER SER VAL PRO TYR HIS THR VAL ILE ASN SEQRES 13 A 216 ARG HIS VAL PHE GLU SER LEU ALA ALA ASN ALA ARG ILE SEQRES 14 A 216 ALA LEU HIS VAL ARG VAL LEU TYR GLY ARG ASP PRO HIS SEQRES 15 A 216 HIS ILE THR GLU ALA GLN TYR LYS ALA VAL ALA ARG ALA SEQRES 16 A 216 LEU ARG GLN ALA VAL GLU PRO ASP PRO ARG VAL SER GLY SEQRES 17 A 216 VAL PRO SER THR LYS GLY ALA LEU HET MN A 301 1 HET MN A 302 1 HET CL A 303 1 HET CL A 304 1 HET HB3 A 305 9 HET EDO A 306 4 HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION HETNAM HB3 2-(1H-1,2,4-TRIAZOL-5-YLSULFANYL)ETHANAMINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 2(MN 2+) FORMUL 4 CL 2(CL 1-) FORMUL 6 HB3 C4 H8 N4 S FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *107(H2 O) HELIX 1 AA1 VAL A 42 ALA A 56 1 15 HELIX 2 AA2 ALA A 72 GLY A 92 1 21 HELIX 3 AA3 PRO A 130 HIS A 135 5 6 HELIX 4 AA4 VAL A 148 ARG A 162 1 15 HELIX 5 AA5 ASP A 174 GLU A 195 1 22 SHEET 1 AA1 4 ARG A 12 ARG A 18 0 SHEET 2 AA1 4 SER A 22 ASP A 29 -1 O ILE A 26 N ILE A 15 SHEET 3 AA1 4 ASP A 59 GLY A 66 -1 O THR A 65 N ASP A 23 SHEET 4 AA1 4 VAL A 36 ASP A 39 1 N ALA A 37 O VAL A 62 SHEET 1 AA2 4 PHE A 100 MET A 107 0 SHEET 2 AA2 4 THR A 110 ASP A 117 -1 O VAL A 116 N GLY A 101 SHEET 3 AA2 4 ALA A 164 TYR A 171 -1 O ARG A 168 N HIS A 113 SHEET 4 AA2 4 TYR A 123 THR A 127 1 N TYR A 123 O LEU A 165 SHEET 1 AA3 2 THR A 137 ILE A 138 0 SHEET 2 AA3 2 TYR A 145 HIS A 146 -1 O TYR A 145 N ILE A 138 LINK NE2 HIS A 47 MN MN A 302 1555 1555 2.26 LINK NE2 HIS A 73 MN MN A 301 1555 1555 2.23 LINK NE2 HIS A 74 MN MN A 302 1555 16555 2.29 LINK OE1 GLU A 77 MN MN A 301 1555 1555 2.29 LINK NE2 HIS A 152 MN MN A 301 1555 1555 2.26 LINK NE2 HIS A 176 MN MN A 302 1555 1555 2.30 LINK NE2 HIS A 177 MN MN A 301 1555 15555 2.30 LINK OE1 GLU A 180 MN MN A 302 1555 1555 2.21 LINK MN MN A 301 N2 HB3 A 305 1555 1555 2.25 LINK MN MN A 301 O HOH A 407 1555 16555 2.12 LINK MN MN A 302 N3 HB3 A 305 1555 15555 2.19 LINK MN MN A 302 O HOH A 416 1555 15555 2.23 CRYST1 112.100 112.100 112.100 90.00 90.00 90.00 P 4 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008921 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008921 0.00000