HEADER ONCOPROTEIN 19-DEC-20 7DPJ TITLE H-RAS Q61L IN COMPLEX WITH GPPNHP (STATE 1) AFTER STRUCTURAL TITLE 2 TRANSITION BY HUMIDITY CONTROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ONCOPROTEIN, STATE TRANSITION, RAS EXPDTA X-RAY DIFFRACTION AUTHOR H.TANIGUCHI,S.MATSUMOTO,R.MIYAMOTO,T.KAWAMURA,T.KUMASAKA,T.KATAOKA REVDAT 2 29-NOV-23 7DPJ 1 REMARK REVDAT 1 28-JUL-21 7DPJ 0 JRNL AUTH S.MATSUMOTO,H.TANIGUCHI-TAMURA,M.ARAKI,T.KAWAMURA, JRNL AUTH 2 R.MIYAMOTO,C.TSUDA,F.SHIMA,T.KUMASAKA,Y.OKUNO,T.KATAOKA JRNL TITL ONCOGENIC MUTATIONS Q61L AND Q61H CONFER ACTIVE FORM-LIKE JRNL TITL 2 STRUCTURAL FEATURES TO THE INACTIVE STATE (STATE 1) JRNL TITL 3 CONFORMATION OF H-RAS PROTEIN. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 565 85 2021 JRNL REFN ESSN 1090-2104 JRNL PMID 34102474 JRNL DOI 10.1016/J.BBRC.2021.05.084 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.039 REMARK 3 FREE R VALUE TEST SET COUNT : 1408 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 923 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00300 REMARK 3 B22 (A**2) : -0.00300 REMARK 3 B33 (A**2) : 0.00900 REMARK 3 B12 (A**2) : -0.00100 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.120 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1317 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1172 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1793 ; 1.376 ; 1.686 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2710 ; 1.275 ; 1.591 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 167 ; 6.203 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;40.367 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 214 ;12.558 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.432 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 181 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1482 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 260 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 229 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 43 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 632 ; 0.150 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 66 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.208 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 5 ; 0.214 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 665 ; 1.296 ; 2.433 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 664 ; 1.294 ; 2.431 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 830 ; 2.118 ; 3.640 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 831 ; 2.117 ; 3.642 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 652 ; 1.609 ; 2.521 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 650 ; 1.611 ; 2.522 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 962 ; 2.609 ; 3.720 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 960 ; 2.612 ; 3.720 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7DPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1300019914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14025 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.976 REMARK 200 RESOLUTION RANGE LOW (A) : 45.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3K8Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, SODIUM ACETATE, CALCIUM REMARK 280 ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 45.92200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.51308 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.47100 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 45.92200 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.51308 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.47100 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 45.92200 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.51308 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.47100 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 45.92200 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.51308 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.47100 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 45.92200 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.51308 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.47100 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 45.92200 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.51308 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.47100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.02616 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 80.94200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 53.02616 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 80.94200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 53.02616 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 80.94200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 53.02616 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.94200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 53.02616 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 80.94200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 53.02616 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 80.94200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 202 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 203 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 205 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 329 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 330 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 353 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 363 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 365 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CD CE NZ REMARK 470 TYR A 32 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 56 CG CD1 CD2 REMARK 470 TYR A 64 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 64 OH REMARK 470 MET A 67 CG SD CE REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 TYR A 71 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 ASP A 108 CG OD1 OD2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 135 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 108 57.16 -119.79 REMARK 500 ARG A 149 -5.82 80.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GNP A 206 O2G 170.6 REMARK 620 3 GNP A 206 O2B 86.4 87.5 REMARK 620 4 HOH A 313 O 82.7 89.9 88.1 REMARK 620 5 HOH A 318 O 91.7 95.3 88.4 173.6 REMARK 620 6 HOH A 357 O 89.8 95.9 175.7 89.3 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 26 O REMARK 620 2 ASP A 33 OD1 59.9 REMARK 620 3 ASP A 33 OD2 60.2 3.2 REMARK 620 4 THR A 35 O 51.2 9.8 9.1 REMARK 620 5 THR A 35 OG1 56.2 6.5 4.5 5.0 REMARK 620 6 HOH A 332 O 65.2 12.3 9.3 15.1 10.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD1 REMARK 620 2 ASP A 30 OD1 0.0 REMARK 620 3 GLU A 31 OE2 71.9 71.9 REMARK 620 4 GLU A 31 OE2 71.9 71.9 0.0 REMARK 620 5 HOH A 314 O 100.0 100.0 64.1 64.1 REMARK 620 6 HOH A 314 O 89.1 89.1 140.9 140.9 154.9 REMARK 620 7 HOH A 330 O 111.4 111.4 141.1 141.1 77.4 77.4 REMARK 620 8 HOH A 330 O 111.4 111.4 141.1 141.1 77.4 77.4 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 102 O REMARK 620 2 ARG A 102 O 0.0 REMARK 620 3 ASP A 105 OD1 82.0 82.0 REMARK 620 4 ASP A 105 OD2 84.4 84.4 55.4 REMARK 620 5 ASP A 105 OD1 82.0 82.0 0.0 55.4 REMARK 620 6 ASP A 105 OD2 84.4 84.4 55.4 0.0 55.4 REMARK 620 7 HOH A 353 O 94.0 94.0 91.7 147.1 91.7 147.1 REMARK 620 8 HOH A 353 O 93.9 93.9 91.7 147.1 91.7 147.1 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 335 O REMARK 620 2 HOH A 335 O 84.6 REMARK 620 3 HOH A 345 O 76.8 79.4 REMARK 620 4 HOH A 345 O 79.4 156.4 113.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7DPH RELATED DB: PDB REMARK 900 7DPH CONTAINS THE SAME PROTEIN MUTATED Q61 TO HISTIDIN. DBREF 7DPJ A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 7DPJ GLY A -4 UNP P01112 EXPRESSION TAG SEQADV 7DPJ PRO A -3 UNP P01112 EXPRESSION TAG SEQADV 7DPJ LEU A -2 UNP P01112 EXPRESSION TAG SEQADV 7DPJ GLY A -1 UNP P01112 EXPRESSION TAG SEQADV 7DPJ SER A 0 UNP P01112 EXPRESSION TAG SEQADV 7DPJ LEU A 61 UNP P01112 GLN 61 ENGINEERED MUTATION SEQRES 1 A 171 GLY PRO LEU GLY SER MET THR GLU TYR LYS LEU VAL VAL SEQRES 2 A 171 VAL GLY ALA GLY GLY VAL GLY LYS SER ALA LEU THR ILE SEQRES 3 A 171 GLN LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP PRO SEQRES 4 A 171 THR ILE GLU ASP SER TYR ARG LYS GLN VAL VAL ILE ASP SEQRES 5 A 171 GLY GLU THR CYS LEU LEU ASP ILE LEU ASP THR ALA GLY SEQRES 6 A 171 LEU GLU GLU TYR SER ALA MET ARG ASP GLN TYR MET ARG SEQRES 7 A 171 THR GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN ASN SEQRES 8 A 171 THR LYS SER PHE GLU ASP ILE HIS GLN TYR ARG GLU GLN SEQRES 9 A 171 ILE LYS ARG VAL LYS ASP SER ASP ASP VAL PRO MET VAL SEQRES 10 A 171 LEU VAL GLY ASN LYS CYS ASP LEU ALA ALA ARG THR VAL SEQRES 11 A 171 GLU SER ARG GLN ALA GLN ASP LEU ALA ARG SER TYR GLY SEQRES 12 A 171 ILE PRO TYR ILE GLU THR SER ALA LYS THR ARG GLN GLY SEQRES 13 A 171 VAL GLU ASP ALA PHE TYR THR LEU VAL ARG GLU ILE ARG SEQRES 14 A 171 GLN HIS HET MG A 201 1 HET MG A 202 1 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET GNP A 206 32 HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 2 MG 2(MG 2+) FORMUL 4 CA 3(CA 2+) FORMUL 7 GNP C10 H17 N6 O13 P3 FORMUL 8 HOH *65(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 MET A 67 GLY A 75 1 9 HELIX 3 AA3 ASN A 86 ASP A 105 1 20 HELIX 4 AA4 GLU A 126 TYR A 137 1 12 HELIX 5 AA5 GLY A 151 GLN A 165 1 15 SHEET 1 AA1 6 SER A 39 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N TYR A 4 O LEU A 52 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 201 1555 1555 2.23 LINK O ASN A 26 CA CA A 204 1555 18444 2.27 LINK OD1 ASP A 30 CA CA A 203 1555 1555 2.35 LINK OD1 ASP A 30 CA CA A 203 1555 18444 2.35 LINK OE2 GLU A 31 CA CA A 203 1555 1555 2.65 LINK OE2 GLU A 31 CA CA A 203 1555 18444 2.65 LINK OD1 ASP A 33 CA CA A 204 1555 1555 2.74 LINK OD2 ASP A 33 CA CA A 204 1555 1555 2.76 LINK O THR A 35 CA CA A 204 1555 1555 2.31 LINK OG1 THR A 35 CA CA A 204 1555 1555 2.49 LINK O ARG A 102 CA CA A 205 1555 1555 2.35 LINK O ARG A 102 CA CA A 205 1555 16544 2.35 LINK OD1 ASP A 105 CA CA A 205 1555 1555 2.06 LINK OD2 ASP A 105 CA CA A 205 1555 1555 2.56 LINK OD1 ASP A 105 CA CA A 205 1555 16544 2.07 LINK OD2 ASP A 105 CA CA A 205 1555 16544 2.56 LINK MG MG A 201 O2G GNP A 206 1555 1555 2.05 LINK MG MG A 201 O2B GNP A 206 1555 1555 2.24 LINK MG MG A 201 O HOH A 313 1555 1555 2.21 LINK MG MG A 201 O HOH A 318 1555 1555 2.11 LINK MG MG A 201 O HOH A 357 1555 1555 2.29 LINK MG MG A 202 O HOH A 335 1555 1555 2.19 LINK MG MG A 202 O HOH A 335 1555 2555 2.19 LINK MG MG A 202 O HOH A 345 1555 1555 2.37 LINK MG MG A 202 O HOH A 345 1555 3555 2.37 LINK CA CA A 203 O HOH A 314 1555 1555 2.16 LINK CA CA A 203 O HOH A 314 1555 18444 2.16 LINK CA CA A 203 O HOH A 330 1555 1555 2.37 LINK CA CA A 203 O HOH A 330 1555 18444 2.37 LINK CA CA A 204 O HOH A 332 1555 1555 2.90 LINK CA CA A 205 O HOH A 353 1555 1555 2.27 LINK CA CA A 205 O HOH A 353 1555 16544 2.27 CRYST1 91.844 91.844 121.413 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010888 0.006286 0.000000 0.00000 SCALE2 0.000000 0.012572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008236 0.00000